Wall clock time and date at job start Sat Apr 11 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38209 * 120.04165 * 2 1 4 4 Br 1.89102 * 119.97488 * 359.95526 * 3 2 1 5 5 C 1.38364 * 120.05220 * 180.23360 * 3 2 1 6 6 C 1.38298 * 120.14033 * 359.48789 * 5 3 2 7 7 C 1.38074 * 120.08904 * 0.51356 * 6 5 3 8 8 C 1.38890 * 120.04198 * 179.97438 * 2 1 3 9 9 N 1.39729 * 120.07042 * 0.04404 * 8 2 1 10 10 C 1.34779 * 120.00047 * 204.83104 * 9 8 2 11 11 O 1.21383 * 119.99627 * 5.52583 * 10 9 8 12 12 C 1.49348 * 120.00067 * 185.51779 * 10 9 8 13 13 O 1.21361 * 120.00216 * 0.02562 * 12 10 9 14 14 N 1.34779 * 120.00067 * 180.02562 * 12 10 9 15 15 C 1.46492 * 120.00173 * 180.02562 * 14 12 10 16 16 C 1.50695 * 109.47448 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00054 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00271 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00155 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00091 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47080 * 60.00129 * 20 18 16 22 22 H 1.48498 * 109.47254 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47489 * 300.00718 * 20 18 16 24 24 H 1.09000 * 109.47348 * 90.00003 * 1 2 3 25 25 H 1.08994 * 109.47083 * 210.00015 * 1 2 3 26 26 H 1.09004 * 109.47122 * 329.99976 * 1 2 3 27 27 H 1.08004 * 119.92975 * 179.72059 * 5 3 2 28 28 H 1.08002 * 119.95680 * 180.23252 * 6 5 3 29 29 H 1.08002 * 120.03159 * 179.72660 * 7 6 5 30 30 H 0.96996 * 119.99945 * 24.83369 * 9 8 2 31 31 H 0.96999 * 119.99951 * 0.02562 * 14 12 10 32 32 H 1.09002 * 109.47003 * 300.00110 * 15 14 12 33 33 H 1.09001 * 109.47531 * 59.99500 * 15 14 12 34 34 H 0.96998 * 120.00108 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1964 0.0000 4 35 1.2539 2.8344 -0.0013 5 6 3.5826 1.1967 -0.0049 6 6 4.2773 0.0008 0.0009 7 6 3.5919 -1.1978 0.0009 8 6 2.2024 -1.2023 0.0005 9 7 1.5061 -2.4138 0.0002 10 6 2.0884 -3.5259 0.4908 11 8 3.1767 -3.4563 1.0238 12 6 1.3945 -4.8436 0.3788 13 8 0.3065 -4.9132 -0.1544 14 7 1.9766 -5.9556 0.8699 15 6 1.2962 -7.2483 0.7595 16 6 2.1521 -8.3212 1.3818 17 1 3.1076 -8.0658 1.8157 18 6 1.7154 -9.6289 1.3972 19 7 0.5517 -9.9399 0.8693 20 14 2.7767 -10.9590 2.1679 21 1 3.0068 -10.6407 3.6001 22 1 2.0864 -12.2691 2.0573 23 1 4.0804 -11.0243 1.4599 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 4.1213 2.1328 -0.0094 28 1 5.3573 0.0045 0.0009 29 1 4.1354 -2.1312 0.0010 30 1 0.6037 -2.4544 -0.3532 31 1 2.8460 -5.9000 1.2964 32 1 0.3391 -7.2006 1.2791 33 1 1.1276 -7.4816 -0.2918 34 1 0.2447 -10.8599 0.8799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427903104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:40 Heat of formation + Delta-G solvation = -62.013978 kcal Electronic energy + Delta-G solvation = -20353.543223 eV Core-core repulsion = 16910.840938 eV Total energy + Delta-G solvation = -3442.702286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.30563 -40.61980 -39.34689 -36.77198 -35.94552 -34.41061 -34.14405 -32.22005 -30.29242 -29.63381 -27.97469 -26.46448 -24.59432 -23.11380 -22.45085 -21.38345 -20.21586 -18.64203 -18.31303 -17.59005 -17.18700 -16.95634 -16.86175 -16.33627 -15.88368 -15.47550 -15.18147 -14.98860 -14.76548 -14.30565 -14.07767 -13.92941 -13.57020 -13.29320 -13.07102 -12.93073 -12.70744 -12.63547 -12.43952 -12.23665 -12.11389 -11.56320 -11.39732 -11.12959 -10.84426 -10.70615 -10.08341 -9.69953 -9.26144 -8.31867 -6.48129 -0.22581 0.05149 0.49183 0.55511 1.21085 1.44830 1.47253 1.55865 2.00581 2.35223 2.56398 2.62458 3.03666 3.36554 3.66702 3.84580 3.94090 4.22016 4.28179 4.52919 4.59640 4.65027 4.93647 4.98231 5.11406 5.12489 5.16280 5.16864 5.22915 5.34383 5.49361 5.73548 5.76935 5.88246 6.38375 6.55486 6.66639 6.96179 7.24873 8.79522 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.002149 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.260585 B =13026.049366 C =13612.294314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.084 4.084 4 Br -0.033 7.033 5 C -0.100 4.100 6 C -0.095 4.095 7 C -0.127 4.127 8 C 0.132 3.868 9 N -0.631 5.631 10 C 0.521 3.479 11 O -0.509 6.509 12 C 0.494 3.506 13 O -0.556 6.556 14 N -0.670 5.670 15 C 0.263 3.737 16 C -0.563 4.563 17 H 0.080 0.920 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.981 3.019 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.264 1.264 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.139 0.861 30 H 0.430 0.570 31 H 0.414 0.586 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 28.034 -2.363 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.164 4.164 4 Br 0.052 6.948 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.148 4.148 8 C 0.037 3.963 9 N -0.277 5.277 10 C 0.303 3.697 11 O -0.383 6.383 12 C 0.274 3.726 13 O -0.436 6.436 14 N -0.320 5.320 15 C 0.141 3.859 16 C -0.601 4.601 17 H 0.098 0.902 18 C -0.190 4.190 19 N -0.563 5.563 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.188 1.188 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.175 0.825 28 H 0.179 0.821 29 H 0.157 0.843 30 H 0.270 0.730 31 H 0.251 0.749 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.063 28.396 -2.399 28.786 hybrid contribution 0.198 -1.420 0.231 1.452 sum 4.261 26.976 -2.168 27.397 Atomic orbital electron populations 1.21045 0.88863 1.04433 1.04363 1.19608 0.97540 0.89947 1.02001 1.21618 0.95210 0.91007 1.08583 1.96692 1.75632 1.24840 1.97606 1.21418 0.91638 1.00082 0.98845 1.21330 1.01650 0.90299 0.98118 1.21651 0.92387 1.00883 0.99848 1.17658 0.91818 0.84012 1.02775 1.43072 1.19744 1.05822 1.59048 1.20103 0.85697 0.85242 0.78610 1.90709 1.20493 1.86127 1.41014 1.20127 0.86037 0.85728 0.80747 1.90727 1.21436 1.86770 1.44678 1.46145 1.23082 1.07358 1.55451 1.18841 0.92632 0.78374 0.96008 1.21536 1.05649 0.92746 1.40126 0.90150 1.25951 0.96479 1.01203 0.95327 1.70087 1.20938 1.20407 1.44893 0.85253 0.78375 0.76805 0.79111 1.18892 1.20826 1.18827 0.88816 0.91090 0.89231 0.82468 0.82086 0.84312 0.73010 0.74943 0.97616 0.97598 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.99 71.24 0.64 -1.52 16 2 C -0.09 -1.75 5.90 -19.71 -0.12 -1.87 16 3 C -0.08 -1.53 6.22 22.29 0.14 -1.39 16 4 Br -0.03 -0.51 31.78 -20.37 -0.65 -1.16 16 5 C -0.10 -1.58 9.78 22.31 0.22 -1.36 16 6 C -0.09 -1.64 10.04 22.24 0.22 -1.41 16 7 C -0.13 -2.96 8.72 22.40 0.20 -2.77 16 8 C 0.13 3.17 6.41 38.21 0.24 3.41 16 9 N -0.63 -16.49 4.96 -304.84 -1.51 -18.01 16 10 C 0.52 16.71 7.69 87.24 0.67 17.38 16 11 O -0.51 -17.04 13.64 -3.35 -0.05 -17.09 16 12 C 0.49 19.32 7.89 87.24 0.69 20.01 16 13 O -0.56 -24.31 16.48 -3.28 -0.05 -24.37 16 14 N -0.67 -28.49 5.54 -468.26 -2.59 -31.09 16 15 C 0.26 13.80 5.43 85.63 0.46 14.26 16 16 C -0.56 -30.00 9.28 25.60 0.24 -29.76 16 17 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 18 C 0.01 0.59 5.46 84.65 0.46 1.05 16 19 N -0.93 -53.77 13.29 21.45 0.28 -53.48 16 20 Si 0.98 41.61 29.54 68.60 2.03 43.64 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.20 6.99 -2.39 -0.02 1.19 16 26 H 0.09 1.35 6.65 -2.38 -0.02 1.33 16 27 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 28 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 29 H 0.14 3.64 5.79 -2.91 -0.02 3.62 16 30 H 0.43 10.14 6.88 -92.71 -0.64 9.50 16 31 H 0.41 15.95 7.79 -92.71 -0.72 15.23 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.27 14.74 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -63.72 318.88 1.34 -62.39 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.19 Total: 23.13 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 4.07 Total: 16.03 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.82 Total: -102.58 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -0.10 Total: -41.46 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.65 Total: -1.16 kcal Total: -63.72 1.34 -62.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427903104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.372 kcal (2) G-P(sol) polarization free energy of solvation -63.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds