Wall clock time and date at job start Sat Apr 11 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38309 * 119.96577 * 2 1 4 4 C 1.38271 * 120.15808 * 179.97438 * 3 2 1 5 5 C 1.38130 * 120.09443 * 0.25430 * 4 3 2 6 6 C 1.38886 * 119.93099 * 359.47231 * 5 4 3 7 7 N 1.39755 * 120.07743 * 180.24922 * 6 5 4 8 8 C 1.34770 * 120.00117 * 325.27931 * 7 6 5 9 9 O 1.21376 * 120.00435 * 4.50144 * 8 7 6 10 10 C 1.49360 * 119.99788 * 184.50411 * 8 7 6 11 11 O 1.21356 * 119.99785 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99803 * 179.97438 * 10 8 7 13 13 C 1.46501 * 119.99826 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47222 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99913 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99692 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00212 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47216 * 59.99576 * 18 16 14 20 20 H 1.48494 * 109.47190 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46921 * 299.99953 * 18 16 14 22 22 C 1.38154 * 119.96343 * 179.97438 * 2 1 3 23 23 Br 1.89097 * 120.04994 * 0.02562 * 22 2 1 24 24 H 1.09004 * 109.47098 * 89.99975 * 1 2 3 25 25 H 1.08997 * 109.47117 * 210.00023 * 1 2 3 26 26 H 1.09004 * 109.46953 * 329.99923 * 1 2 3 27 27 H 1.08000 * 119.92238 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.95294 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.03741 * 179.74385 * 5 4 3 30 30 H 0.97008 * 119.99760 * 145.27480 * 7 6 5 31 31 H 0.97005 * 120.00012 * 0.02562 * 12 10 8 32 32 H 1.09002 * 109.47228 * 300.00372 * 13 12 10 33 33 H 1.09002 * 109.46830 * 60.00568 * 13 12 10 34 34 H 0.96992 * 119.99992 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5806 1.2028 0.0005 5 6 4.2772 0.0101 -0.0042 6 6 3.5874 -1.1953 0.0015 7 7 4.2891 -2.4039 0.0020 8 6 5.4546 -2.5067 -0.6670 9 8 5.9360 -1.5290 -1.2014 10 6 6.1538 -3.8238 -0.7508 11 8 5.6728 -4.8013 -0.2162 12 7 7.3190 -3.9267 -1.4202 13 6 8.0052 -5.2185 -1.5019 14 6 9.2750 -5.0633 -2.2985 15 1 9.5442 -4.0988 -2.7031 16 6 10.0931 -6.1527 -2.5109 17 7 9.7656 -7.3271 -2.0179 18 14 11.6675 -5.9601 -3.4977 19 1 12.5522 -4.9716 -2.8304 20 1 12.3629 -7.2695 -3.5807 21 1 11.3390 -5.4859 -4.8661 22 6 2.1970 -1.1969 0.0005 23 35 1.2519 -2.8347 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6560 2.1325 -0.0004 28 1 4.1166 2.1404 0.0001 29 1 5.3571 0.0148 -0.0080 30 1 3.9374 -3.1688 0.4839 31 1 7.7037 -3.1453 -1.8472 32 1 8.2470 -5.5657 -0.4974 33 1 7.3556 -5.9446 -1.9909 34 1 10.3409 -8.0935 -2.1676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427908280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:46 Heat of formation + Delta-G solvation = -64.708430 kcal Electronic energy + Delta-G solvation = -20365.018642 eV Core-core repulsion = 16922.199516 eV Total energy + Delta-G solvation = -3442.819126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24609 -40.59255 -39.39305 -36.83933 -36.00379 -34.40006 -34.05726 -32.22338 -30.28773 -29.65673 -27.85733 -26.53572 -24.49260 -23.17678 -22.58527 -21.26469 -20.27217 -18.50347 -18.28173 -17.52648 -17.27651 -17.00150 -16.94969 -16.38680 -15.99651 -15.37468 -15.07951 -14.94805 -14.77841 -14.23931 -14.08474 -13.96165 -13.41546 -13.30535 -13.11420 -12.98384 -12.70874 -12.53907 -12.32068 -12.22266 -11.95683 -11.57300 -11.53647 -11.17428 -10.85088 -10.77371 -10.09850 -9.70497 -9.35280 -8.32290 -6.48843 -0.24968 0.11639 0.44257 0.51304 1.17101 1.44192 1.47057 1.55636 1.99373 2.34449 2.55048 2.59456 3.03103 3.35359 3.63750 3.92484 4.13611 4.15289 4.32011 4.58523 4.70555 4.80354 4.93585 4.97375 5.06710 5.15092 5.21186 5.25202 5.33943 5.42772 5.48236 5.74286 5.78700 5.81977 6.33429 6.53931 6.64350 6.94585 7.24088 8.79235 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.002767 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.262138 B =10118.335933 C =11106.388814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.043 4.043 3 C -0.120 4.120 4 C -0.077 4.077 5 C -0.139 4.139 6 C 0.150 3.850 7 N -0.639 5.639 8 C 0.524 3.476 9 O -0.507 6.507 10 C 0.493 3.507 11 O -0.555 6.555 12 N -0.669 5.669 13 C 0.263 3.737 14 C -0.563 4.563 15 H 0.081 0.919 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.983 3.017 19 H -0.263 1.263 20 H -0.283 1.283 21 H -0.264 1.264 22 C -0.134 4.134 23 Br -0.042 7.042 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.169 0.831 28 H 0.162 0.838 29 H 0.135 0.865 30 H 0.426 0.574 31 H 0.414 0.586 32 H 0.006 0.994 33 H 0.005 0.995 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.384 19.077 5.263 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.045 4.045 3 C -0.139 4.139 4 C -0.095 4.095 5 C -0.160 4.160 6 C 0.054 3.946 7 N -0.287 5.287 8 C 0.306 3.694 9 O -0.382 6.382 10 C 0.273 3.727 11 O -0.435 6.435 12 N -0.319 5.319 13 C 0.142 3.858 14 C -0.601 4.601 15 H 0.099 0.901 16 C -0.190 4.190 17 N -0.564 5.564 18 Si 0.806 3.194 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.189 1.189 22 C -0.216 4.216 23 Br 0.044 6.956 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.187 0.813 28 H 0.180 0.820 29 H 0.153 0.847 30 H 0.265 0.735 31 H 0.251 0.749 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.615 18.186 5.245 27.986 hybrid contribution 1.159 -0.475 -0.287 1.285 sum -19.457 17.710 4.958 26.773 Atomic orbital electron populations 1.21067 0.88113 1.04777 1.04025 1.20035 0.97982 0.90536 0.95946 1.21482 0.93961 0.98085 1.00398 1.21540 0.94719 0.97977 0.95288 1.21409 1.01373 0.90943 1.02265 1.17676 0.89642 0.85886 1.01393 1.43214 1.21367 1.14114 1.49974 1.20113 0.81700 0.88859 0.78766 1.90721 1.64702 1.38025 1.44723 1.20109 0.82907 0.88674 0.81020 1.90728 1.66253 1.39293 1.47238 1.46138 1.20632 1.14713 1.50459 1.18851 0.91331 0.79504 0.96145 1.21538 1.06167 0.97087 1.35316 0.90106 1.25971 1.02160 0.94275 0.96578 1.70093 1.39800 1.01025 1.45441 0.85233 0.77642 0.77638 0.78914 1.18782 1.20783 1.18853 1.21794 0.91977 0.93350 1.14448 1.96707 1.74622 1.26599 1.97701 0.89545 0.90945 0.88349 0.81346 0.82032 0.84708 0.73456 0.74925 0.97575 0.97718 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.55 71.24 0.68 -0.69 16 2 C -0.04 -0.71 5.88 -19.87 -0.12 -0.82 16 3 C -0.12 -1.60 9.70 22.29 0.22 -1.38 16 4 C -0.08 -1.23 10.04 22.25 0.22 -1.01 16 5 C -0.14 -3.28 8.70 22.40 0.19 -3.09 16 6 C 0.15 3.90 6.30 38.22 0.24 4.14 16 7 N -0.64 -18.93 4.99 -304.77 -1.52 -20.45 16 8 C 0.52 18.07 7.73 87.24 0.67 18.74 16 9 O -0.51 -17.87 13.89 -3.33 -0.05 -17.92 16 10 C 0.49 20.40 7.89 87.24 0.69 21.08 16 11 O -0.56 -25.67 16.48 -3.27 -0.05 -25.72 16 12 N -0.67 -29.47 5.54 -468.24 -2.59 -32.07 16 13 C 0.26 14.13 5.43 85.63 0.46 14.59 16 14 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 15 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 16 C 0.01 0.58 5.46 84.66 0.46 1.04 16 17 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 18 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 C -0.13 -2.99 6.24 22.44 0.14 -2.85 16 23 Br -0.04 -0.91 30.58 -20.37 -0.62 -1.53 16 24 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.07 0.90 6.64 -2.39 -0.02 0.89 16 26 H 0.10 0.62 8.09 -2.38 -0.02 0.60 16 27 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 28 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 29 H 0.14 3.55 6.20 -2.91 -0.02 3.53 16 30 H 0.43 12.29 7.35 -92.70 -0.68 11.61 16 31 H 0.41 16.51 7.79 -92.70 -0.72 15.78 16 32 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -66.33 320.31 1.35 -64.99 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.23 Total: 23.29 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 4.11 Total: 19.48 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.83 Total: -106.69 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.10 Total: -43.64 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -0.62 Total: -1.53 kcal Total: -66.33 1.35 -64.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427908280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.277 kcal (2) G-P(sol) polarization free energy of solvation -66.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds