Wall clock time and date at job start Sat Apr 11 2020 05:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39631 * 120.14199 * 235.90472 * 3 2 1 5 5 C 1.38051 * 119.83021 * 179.97438 * 4 3 2 6 6 Cl 1.73606 * 119.93569 * 179.97438 * 5 4 3 7 7 C 1.38494 * 120.12724 * 0.02562 * 5 4 3 8 8 C 1.38322 * 120.28892 * 359.74259 * 7 5 4 9 9 C 1.37973 * 120.16757 * 0.51082 * 8 7 5 10 10 S 1.76193 * 120.06511 * 179.76655 * 9 8 7 11 11 O 1.42100 * 106.40574 * 1.18646 * 10 9 8 12 12 O 1.42100 * 106.40415 * 228.26401 * 10 9 8 13 13 N 1.65604 * 107.21594 * 114.72312 * 10 9 8 14 14 C 1.46505 * 119.99853 * 65.00538 * 13 10 9 15 15 C 1.52997 * 109.46860 * 162.94776 * 14 13 10 16 16 C 1.50701 * 115.55338 * 305.08831 * 15 14 13 17 17 H 1.08002 * 119.99801 * 95.22758 * 16 15 14 18 18 C 1.37874 * 120.00072 * 275.22358 * 16 15 14 19 19 N 1.31519 * 120.00042 * 7.55415 * 18 16 15 20 20 Si 1.86802 * 119.99810 * 187.55114 * 18 16 15 21 21 H 1.48505 * 109.46822 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.47004 * 299.99986 * 20 18 16 23 23 H 1.48498 * 109.47142 * 60.00256 * 20 18 16 24 24 C 1.53002 * 117.49954 * 90.76443 * 15 14 13 25 25 C 1.53005 * 117.49447 * 159.41940 * 15 14 13 26 26 H 1.08002 * 120.08828 * 359.95592 * 4 3 2 27 27 H 1.07999 * 119.85764 * 180.02562 * 7 5 4 28 28 H 1.08001 * 119.91696 * 180.25931 * 8 7 5 29 29 H 0.96995 * 119.99896 * 244.99743 * 13 10 9 30 30 H 1.09001 * 109.47187 * 42.94605 * 14 13 10 31 31 H 1.08999 * 109.46397 * 282.94355 * 14 13 10 32 32 H 0.96996 * 119.99667 * 6.49844 * 19 18 16 33 33 H 1.08997 * 117.50228 * 215.00081 * 24 15 14 34 34 H 1.09001 * 117.49606 * 0.02562 * 24 15 14 35 35 H 1.08999 * 117.50440 * 359.97438 * 25 15 14 36 36 H 1.09005 * 117.49509 * 144.97325 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.6778 0.9999 5 6 4.6493 0.6738 0.9940 6 17 5.5235 1.5154 2.2356 7 6 5.3382 0.0005 -0.0010 8 6 4.6491 -0.6760 -0.9914 9 6 3.2694 -0.6755 -1.0001 10 16 2.3944 -1.5330 -2.2663 11 8 3.3778 -2.1362 -3.0959 12 8 1.4114 -0.6313 -2.7560 13 7 1.5712 -2.7729 -1.5399 14 6 0.4985 -2.4801 -0.5860 15 6 -0.3643 -3.7283 -0.3901 16 6 -0.9368 -4.3270 -1.6490 17 1 -0.4235 -5.1390 -2.1426 18 6 -2.1157 -3.8381 -2.1706 19 7 -2.6630 -2.7573 -1.6589 20 14 -2.9356 -4.7111 -3.6043 21 1 -4.1808 -3.9918 -3.9750 22 1 -2.0106 -4.7315 -4.7658 23 1 -3.2676 -6.1041 -3.2112 24 6 0.0282 -4.6892 0.7340 25 6 -1.2144 -3.8073 0.8797 26 1 2.7324 1.2037 1.7759 27 1 6.4182 -0.0001 -0.0012 28 1 5.1924 -1.2025 -1.7621 29 1 1.7993 -3.6928 -1.7461 30 1 -0.1187 -1.6685 -0.9711 31 1 0.9325 -2.1849 0.3693 32 1 -2.1919 -2.2506 -0.9790 33 1 -0.1275 -5.7544 0.5630 34 1 0.9009 -4.4319 1.3342 35 1 -1.1586 -2.9702 1.5756 36 1 -2.1879 -4.2919 0.8042 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429929345.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:49 Heat of formation + Delta-G solvation = -3.561090 kcal Electronic energy + Delta-G solvation = -25202.421780 eV Core-core repulsion = 21419.434759 eV Total energy + Delta-G solvation = -3782.987022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91693 -39.40971 -38.54431 -38.00075 -37.49547 -37.12214 -35.05530 -33.94686 -32.85110 -32.47793 -27.53488 -26.76514 -25.64407 -24.60698 -23.10726 -21.62409 -21.08210 -20.33622 -19.13739 -18.68965 -18.19096 -17.52341 -17.08337 -16.88131 -16.07243 -15.71702 -15.67453 -15.62629 -15.57694 -15.05172 -14.64953 -14.53160 -14.35456 -14.22549 -14.06750 -13.58213 -13.41003 -13.38370 -13.26712 -13.03184 -12.85467 -12.65186 -12.55166 -12.23982 -12.20495 -12.13048 -11.98877 -11.36223 -10.80385 -10.50738 -10.45968 -10.39939 -10.34783 -10.13346 -8.49037 -6.26114 -1.05948 -0.79162 -0.34355 0.71737 1.27927 1.51345 1.51478 1.58506 1.76344 1.79929 2.23106 2.41554 2.53690 2.58453 3.06037 3.23198 3.25722 3.52991 3.73746 3.87917 3.94886 4.03343 4.27972 4.34163 4.39053 4.42464 4.46858 4.49028 4.64651 4.80394 4.82368 5.02887 5.04730 5.25730 5.44861 5.46041 6.04033 6.08924 6.16464 6.28845 6.71874 7.55499 8.88865 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.003880 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.651509 B = 7214.601297 C = 7801.965525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C 0.210 3.790 3 C 0.074 3.926 4 C -0.074 4.074 5 C 0.014 3.986 6 Cl -0.028 7.028 7 C -0.083 4.083 8 C -0.001 4.001 9 C -0.639 4.639 10 S 2.689 3.311 11 O -0.965 6.965 12 O -0.989 6.989 13 N -1.090 6.090 14 C 0.149 3.851 15 C -0.016 4.016 16 C -0.575 4.575 17 H 0.052 0.948 18 C -0.021 4.021 19 N -0.929 5.929 20 Si 1.098 2.902 21 H -0.291 1.291 22 H -0.275 1.275 23 H -0.268 1.268 24 C -0.162 4.162 25 C -0.179 4.179 26 H 0.172 0.828 27 H 0.194 0.806 28 H 0.185 0.815 29 H 0.425 0.575 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.267 0.733 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.140 6.457 8.154 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.059 5.059 2 C -0.105 4.105 3 C 0.070 3.930 4 C -0.096 4.096 5 C -0.014 4.014 6 Cl 0.001 6.999 7 C -0.103 4.103 8 C -0.020 4.020 9 C -0.730 4.730 10 S 2.781 3.219 11 O -0.955 6.955 12 O -0.979 6.979 13 N -0.851 5.851 14 C 0.022 3.978 15 C -0.018 4.018 16 C -0.613 4.613 17 H 0.070 0.930 18 C -0.222 4.222 19 N -0.564 5.564 20 Si 0.921 3.079 21 H -0.217 1.217 22 H -0.201 1.201 23 H -0.193 1.193 24 C -0.199 4.199 25 C -0.218 4.218 26 H 0.189 0.811 27 H 0.211 0.789 28 H 0.202 0.798 29 H 0.262 0.738 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.046 6.936 6.468 21.276 hybrid contribution 1.303 -0.038 1.596 2.061 sum 20.349 6.897 8.064 22.950 Atomic orbital electron populations 1.81387 1.12913 1.05746 1.05834 1.25971 0.93307 0.95861 0.95349 1.15252 0.82738 0.98922 0.96131 1.21326 0.93067 0.97569 0.97588 1.21135 0.91715 0.96016 0.92496 1.98440 1.75034 1.75387 1.51001 1.21862 1.03348 0.93918 0.91148 1.21284 0.89563 0.93475 0.97687 1.30904 1.07856 1.16425 1.17832 1.01701 0.73114 0.73163 0.73961 1.93545 1.60583 1.76629 1.64741 1.93611 1.60247 1.65788 1.78255 1.54960 1.47053 1.22159 1.60943 1.21559 0.87398 0.99249 0.89580 1.19309 0.98198 0.94392 0.89919 1.21462 1.10334 1.19703 1.09815 0.92994 1.26929 0.96307 0.96377 1.02614 1.70792 1.41087 1.16077 1.28465 0.83197 0.75628 0.75388 0.73638 1.21652 1.20066 1.19311 1.22971 0.97411 0.96856 1.02634 1.22627 0.95126 1.02176 1.01840 0.81066 0.78928 0.79801 0.73775 0.91969 0.92766 0.92284 0.89690 0.88094 0.90586 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -15.83 15.63 19.00 0.30 -15.53 16 2 C 0.21 7.12 9.80 88.33 0.87 7.99 16 3 C 0.07 1.85 5.68 -21.36 -0.12 1.73 16 4 C -0.07 -1.25 9.54 22.56 0.22 -1.03 16 5 C 0.01 0.17 6.31 22.29 0.14 0.31 16 6 Cl -0.03 -0.29 28.95 -2.72 -0.08 -0.37 16 7 C -0.08 -0.86 9.82 22.35 0.22 -0.64 16 8 C 0.00 -0.01 9.54 22.23 0.21 0.20 16 9 C -0.64 -15.66 5.92 22.54 0.13 -15.53 16 10 S 2.69 92.49 5.44 -56.49 -0.31 92.18 16 11 O -0.96 -32.64 16.97 -128.00 -2.17 -34.81 16 12 O -0.99 -43.61 16.21 -128.00 -2.07 -45.69 16 13 N -1.09 -40.97 5.71 -187.48 -1.07 -42.04 16 14 C 0.15 6.40 3.81 86.38 0.33 6.73 16 15 C -0.02 -0.77 1.01 -52.93 -0.05 -0.82 16 16 C -0.58 -31.18 8.42 25.60 0.22 -30.97 16 17 H 0.05 2.76 7.83 -2.91 -0.02 2.73 16 18 C -0.02 -1.23 5.38 84.65 0.46 -0.77 16 19 N -0.93 -57.79 13.45 21.45 0.29 -57.50 16 20 Si 1.10 51.66 29.91 68.60 2.05 53.71 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C -0.16 -6.36 9.93 30.62 0.30 -6.06 16 25 C -0.18 -8.17 9.03 30.62 0.28 -7.89 16 26 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 27 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 28 H 0.18 2.18 7.33 -2.91 -0.02 2.16 16 29 H 0.43 14.96 8.55 -96.75 -0.83 14.13 16 30 H 0.06 3.13 4.28 -2.39 -0.01 3.12 16 31 H 0.05 2.03 6.37 -2.39 -0.02 2.01 16 32 H 0.27 16.75 6.13 -92.71 -0.57 16.19 16 33 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.06 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -77.32 336.93 0.66 -76.66 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.53 Total: 20.13 kcal Atomic # 6 Polarization: -49.94 SS G_CDS: 3.19 Total: -46.75 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -0.49 Total: -115.07 kcal Atomic # 8 Polarization: -76.25 SS G_CDS: -4.25 Total: -80.50 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.05 Total: 53.71 kcal Atomic # 16 Polarization: 92.49 SS G_CDS: -0.31 Total: 92.18 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -77.32 0.66 -76.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429929345.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.098 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds