Wall clock time and date at job start Sat Apr 11 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47025 * 272.58271 * 3 2 1 5 5 H 1.48493 * 109.47616 * 32.58246 * 3 2 1 6 6 H 1.48502 * 109.46910 * 152.58842 * 3 2 1 7 7 C 1.39901 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00121 * 347.71347 * 7 2 1 9 9 C 1.41148 * 120.00161 * 167.72229 * 7 2 1 10 10 C 1.40895 * 120.15287 * 328.70816 * 9 7 2 11 11 C 1.36378 * 119.84563 * 179.76394 * 10 9 7 12 12 C 1.39469 * 120.17911 * 0.51747 * 11 10 9 13 13 N 1.39266 * 119.83786 * 179.76006 * 12 11 10 14 14 C 1.34777 * 120.00300 * 34.41182 * 13 12 11 15 15 O 1.21286 * 119.99728 * 355.31973 * 14 13 12 16 16 C 1.50698 * 120.00058 * 175.04208 * 14 13 12 17 17 N 1.46504 * 109.47230 * 180.27423 * 16 14 13 18 18 C 1.47016 * 121.01561 * 89.99490 * 17 16 14 19 19 S 1.83706 * 103.11107 * 196.71806 * 18 17 16 20 20 C 1.83791 * 94.15765 * 338.08611 * 19 18 17 21 21 C 1.32763 * 121.01943 * 269.72581 * 17 16 14 22 22 O 1.21284 * 121.80827 * 359.65542 * 21 17 16 23 23 C 1.39576 * 120.32135 * 359.47568 * 12 11 10 24 24 Cl 1.73601 * 119.92735 * 180.27900 * 23 12 11 25 25 C 1.36474 * 120.14786 * 0.26574 * 23 12 11 26 26 H 0.96999 * 120.00142 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.07957 * 0.04791 * 10 9 7 28 28 H 1.08004 * 119.91058 * 180.25157 * 11 10 9 29 29 H 0.97003 * 120.00257 * 214.40850 * 13 12 11 30 30 H 1.08999 * 109.47048 * 300.27266 * 16 14 13 31 31 H 1.08998 * 109.47051 * 60.27451 * 16 14 13 32 32 H 1.09001 * 110.69202 * 315.12582 * 18 17 16 33 33 H 1.09000 * 110.68754 * 78.31294 * 18 17 16 34 34 H 1.09001 * 110.84585 * 139.67258 * 20 19 18 35 35 H 1.08999 * 110.85112 * 263.10021 * 20 19 18 36 36 H 1.08008 * 120.09168 * 179.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4355 2.0779 -1.3987 5 1 1.4686 2.6363 0.7539 6 1 3.5665 1.4249 0.6446 7 6 2.0082 -1.2116 0.0005 8 1 1.4867 -2.1361 0.2000 9 6 3.3954 -1.2257 -0.2594 10 6 3.9642 -0.2653 -1.1192 11 6 5.3061 -0.2818 -1.3621 12 6 6.1138 -1.2528 -0.7706 13 7 7.4825 -1.2661 -1.0276 14 6 8.1455 -0.1067 -1.2086 15 8 7.5373 0.9423 -1.2323 16 6 9.6432 -0.1133 -1.3753 17 7 10.1214 1.2606 -1.5488 18 6 10.5078 2.0801 -0.3911 19 16 10.5159 3.7861 -1.0722 20 6 10.7182 3.2335 -2.8134 21 6 10.2239 1.8019 -2.7568 22 8 9.9345 1.1853 -3.7603 23 6 5.5580 -2.2076 0.0824 24 17 6.5741 -3.4072 0.8189 25 6 4.2176 -2.2002 0.3389 26 1 -0.4850 0.8400 -0.0004 27 1 3.3398 0.4850 -1.5811 28 1 5.7438 0.4564 -2.0178 29 1 7.9587 -2.1098 -1.0762 30 1 10.1054 -0.5498 -0.4899 31 1 9.9086 -0.7039 -2.2522 32 1 9.7727 1.9881 0.4085 33 1 11.5005 1.8022 -0.0367 34 1 10.1028 3.8328 -3.4845 35 1 11.7655 3.2706 -3.1130 36 1 3.7884 -2.9397 0.9988 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452648598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:10 Heat of formation + Delta-G solvation = -34.167403 kcal Electronic energy + Delta-G solvation = -24340.404607 eV Core-core repulsion = 20556.090396 eV Total energy + Delta-G solvation = -3784.314211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80498 -39.58022 -37.79664 -36.04913 -35.88428 -34.59332 -33.28927 -31.43709 -29.91136 -29.86661 -28.47763 -26.57407 -24.81136 -22.08853 -21.72625 -20.40972 -19.72355 -18.11449 -17.79728 -17.62470 -17.20350 -16.68482 -16.04171 -15.58245 -15.20483 -15.01786 -14.43726 -14.38210 -14.14811 -14.02637 -13.70026 -13.14745 -13.07681 -12.93719 -12.74109 -12.61534 -12.49831 -12.19744 -11.65687 -11.27107 -11.12770 -10.95037 -10.71957 -10.50730 -10.35891 -10.26100 -9.94576 -9.86668 -9.43952 -9.22497 -9.00687 -8.22696 -7.88683 -7.36956 -7.07946 -4.62714 1.09118 1.40144 2.06387 2.15461 2.32201 2.40566 2.78626 2.84162 3.08992 3.17592 3.28592 3.47318 3.74789 3.90027 4.29642 4.60787 4.66677 4.71098 4.80496 4.82829 4.96805 5.04651 5.18847 5.57069 5.83891 6.16982 6.35926 6.47117 6.60273 6.63426 6.84731 7.08013 7.11040 7.36344 7.54626 7.64898 7.73419 7.83493 8.15740 8.34392 8.48914 8.60538 9.92861 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.003650 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.452894 B = 7670.165163 C = 9182.226098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.083 3.917 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.241 1.241 7 C -0.432 4.432 8 H 0.096 0.904 9 C 0.096 3.904 10 C -0.226 4.226 11 C -0.050 4.050 12 C -0.001 4.001 13 N -0.646 5.646 14 C 0.484 3.516 15 O -0.516 6.516 16 C 0.102 3.898 17 N -0.593 5.593 18 C 0.154 3.846 19 S -0.238 6.238 20 C -0.097 4.097 21 C 0.523 3.477 22 O -0.514 6.514 23 C 0.004 3.996 24 Cl -0.113 7.113 25 C -0.191 4.191 26 H 0.289 0.711 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.400 0.600 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.937 2.142 -0.435 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.164 1.164 7 C -0.459 4.459 8 H 0.114 0.886 9 C 0.092 3.908 10 C -0.246 4.246 11 C -0.070 4.070 12 C -0.095 4.095 13 N -0.290 5.290 14 C 0.268 3.732 15 O -0.391 6.391 16 C -0.025 4.025 17 N -0.326 5.326 18 C -0.080 4.080 19 S -0.013 6.013 20 C -0.248 4.248 21 C 0.308 3.692 22 O -0.389 6.389 23 C -0.024 4.024 24 Cl -0.084 7.084 25 C -0.211 4.211 26 H 0.099 0.901 27 H 0.126 0.874 28 H 0.140 0.860 29 H 0.235 0.765 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.124 0.876 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.081 3.680 -0.369 20.418 hybrid contribution 0.524 -0.848 -0.325 1.049 sum 20.605 2.832 -0.695 20.810 Atomic orbital electron populations 1.69651 1.08025 1.30660 1.34113 1.26193 0.94886 1.01834 0.90832 0.86302 0.81066 0.79347 0.79390 1.19403 1.21707 1.16402 1.19497 0.91002 0.95836 1.39595 0.88637 1.17663 0.93363 0.90411 0.89376 1.20839 0.94610 1.04326 1.04832 1.20451 0.92721 0.96448 0.97366 1.16718 0.82058 1.03466 1.07251 1.42809 1.07805 1.08300 1.70118 1.20905 0.89737 0.84389 0.78130 1.90729 1.68634 1.31078 1.48689 1.21364 0.92460 0.82974 1.05737 1.47236 1.64665 1.14416 1.06261 1.24086 1.04524 0.88342 0.91070 1.88447 1.97089 1.10612 1.05140 1.24204 1.07436 0.96033 0.97157 1.20056 0.77600 0.88351 0.83155 1.90801 1.49165 1.64408 1.34516 1.20295 0.91582 0.92661 0.97879 1.98269 1.70088 1.57538 1.82550 1.20562 0.90142 1.04781 1.05616 0.90062 0.87380 0.85984 0.76534 0.86683 0.86365 0.86345 0.87648 0.84334 0.85288 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.74 13.93 55.55 0.77 -19.96 16 2 C 0.08 2.11 5.47 -17.34 -0.09 2.01 16 3 Si 0.91 20.91 24.40 -169.99 -4.15 16.77 16 4 H -0.27 -6.05 6.66 56.52 0.38 -5.67 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.24 -5.77 6.67 56.52 0.38 -5.40 16 7 C -0.43 -11.19 9.59 -37.86 -0.36 -11.55 16 8 H 0.10 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.10 2.34 5.13 -106.80 -0.55 1.79 16 10 C -0.23 -5.43 6.94 -39.25 -0.27 -5.70 16 11 C -0.05 -1.12 8.62 -39.79 -0.34 -1.47 16 12 C 0.00 -0.02 6.32 -83.53 -0.53 -0.55 16 13 N -0.65 -10.16 5.02 -9.71 -0.05 -10.20 16 14 C 0.48 7.48 7.74 -10.99 -0.09 7.40 16 15 O -0.52 -10.23 13.78 5.55 0.08 -10.16 16 16 C 0.10 1.05 6.04 -5.19 -0.03 1.02 16 17 N -0.59 -6.42 2.32 -177.90 -0.41 -6.83 16 18 C 0.15 1.30 7.84 60.13 0.47 1.77 16 19 S -0.24 -2.36 23.56 -107.50 -2.53 -4.89 16 20 C -0.10 -0.87 7.46 36.43 0.27 -0.60 16 21 C 0.52 6.48 7.67 -11.45 -0.09 6.39 16 22 O -0.51 -8.18 16.94 5.55 0.09 -8.09 16 23 C 0.00 0.08 6.30 -39.72 -0.25 -0.17 16 24 Cl -0.11 -1.80 27.91 -51.86 -1.45 -3.25 16 25 C -0.19 -4.22 9.50 -39.24 -0.37 -4.59 16 26 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 27 H 0.11 2.61 4.41 -52.49 -0.23 2.38 16 28 H 0.12 2.79 6.14 -52.48 -0.32 2.47 16 29 H 0.40 5.00 8.04 -40.82 -0.33 4.67 16 30 H 0.12 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.12 1.12 7.53 -51.93 -0.39 0.73 16 32 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -31.53 334.12 -8.26 -39.79 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -3.41 Total: 6.05 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.23 Total: -4.25 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.31 Total: -37.00 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.15 Total: 16.77 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -2.53 Total: -4.89 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.45 Total: -3.25 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.53 -8.26 -39.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452648598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.620 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds