Wall clock time and date at job start Sat Apr 11 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47025 * 272.58271 * 3 2 1 5 5 H 1.48493 * 109.47616 * 32.58246 * 3 2 1 6 6 H 1.48502 * 109.46910 * 152.58842 * 3 2 1 7 7 C 1.39901 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00121 * 347.71347 * 7 2 1 9 9 C 1.41148 * 120.00161 * 167.72229 * 7 2 1 10 10 C 1.40895 * 120.15287 * 328.70816 * 9 7 2 11 11 C 1.36378 * 119.84563 * 179.76394 * 10 9 7 12 12 C 1.39469 * 120.17911 * 0.51747 * 11 10 9 13 13 N 1.39266 * 119.83786 * 179.76006 * 12 11 10 14 14 C 1.34777 * 120.00300 * 34.41182 * 13 12 11 15 15 O 1.21286 * 119.99728 * 355.31973 * 14 13 12 16 16 C 1.50698 * 120.00058 * 175.04208 * 14 13 12 17 17 N 1.46504 * 109.47230 * 180.27423 * 16 14 13 18 18 C 1.47016 * 121.01561 * 89.99490 * 17 16 14 19 19 S 1.83706 * 103.11107 * 196.71806 * 18 17 16 20 20 C 1.83791 * 94.15765 * 338.08611 * 19 18 17 21 21 C 1.32763 * 121.01943 * 269.72581 * 17 16 14 22 22 O 1.21284 * 121.80827 * 359.65542 * 21 17 16 23 23 C 1.39576 * 120.32135 * 359.47568 * 12 11 10 24 24 Cl 1.73601 * 119.92735 * 180.27900 * 23 12 11 25 25 C 1.36474 * 120.14786 * 0.26574 * 23 12 11 26 26 H 0.96999 * 120.00142 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.07957 * 0.04791 * 10 9 7 28 28 H 1.08004 * 119.91058 * 180.25157 * 11 10 9 29 29 H 0.97003 * 120.00257 * 214.40850 * 13 12 11 30 30 H 1.08999 * 109.47048 * 300.27266 * 16 14 13 31 31 H 1.08998 * 109.47051 * 60.27451 * 16 14 13 32 32 H 1.09001 * 110.69202 * 315.12582 * 18 17 16 33 33 H 1.09000 * 110.68754 * 78.31294 * 18 17 16 34 34 H 1.09001 * 110.84585 * 139.67258 * 20 19 18 35 35 H 1.08999 * 110.85112 * 263.10021 * 20 19 18 36 36 H 1.08008 * 120.09168 * 179.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4355 2.0779 -1.3987 5 1 1.4686 2.6363 0.7539 6 1 3.5665 1.4249 0.6446 7 6 2.0082 -1.2116 0.0005 8 1 1.4867 -2.1361 0.2000 9 6 3.3954 -1.2257 -0.2594 10 6 3.9642 -0.2653 -1.1192 11 6 5.3061 -0.2818 -1.3621 12 6 6.1138 -1.2528 -0.7706 13 7 7.4825 -1.2661 -1.0276 14 6 8.1455 -0.1067 -1.2086 15 8 7.5373 0.9423 -1.2323 16 6 9.6432 -0.1133 -1.3753 17 7 10.1214 1.2606 -1.5488 18 6 10.5078 2.0801 -0.3911 19 16 10.5159 3.7861 -1.0722 20 6 10.7182 3.2335 -2.8134 21 6 10.2239 1.8019 -2.7568 22 8 9.9345 1.1853 -3.7603 23 6 5.5580 -2.2076 0.0824 24 17 6.5741 -3.4072 0.8189 25 6 4.2176 -2.2002 0.3389 26 1 -0.4850 0.8400 -0.0004 27 1 3.3398 0.4850 -1.5811 28 1 5.7438 0.4564 -2.0178 29 1 7.9587 -2.1098 -1.0762 30 1 10.1054 -0.5498 -0.4899 31 1 9.9086 -0.7039 -2.2522 32 1 9.7727 1.9881 0.4085 33 1 11.5005 1.8022 -0.0367 34 1 10.1028 3.8328 -3.4845 35 1 11.7655 3.2706 -3.1130 36 1 3.7884 -2.9397 0.9988 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452648598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:09 Heat of formation + Delta-G solvation = -55.089969 kcal Electronic energy + Delta-G solvation = -24341.311878 eV Core-core repulsion = 20556.090396 eV Total energy + Delta-G solvation = -3785.221481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.88261 -40.89552 -39.38850 -37.41877 -37.02772 -36.15568 -35.04041 -32.46852 -31.66359 -31.36061 -29.39229 -27.57840 -26.34137 -23.81504 -23.28249 -21.75554 -20.82623 -19.60943 -19.17889 -18.76081 -18.38716 -17.68872 -17.21256 -17.03484 -16.48735 -16.21202 -16.13478 -15.72390 -15.26313 -15.11774 -14.78166 -14.65686 -14.58427 -14.36931 -14.18302 -13.92907 -13.52325 -13.40943 -13.09163 -12.92512 -12.66184 -12.40957 -12.20566 -12.06890 -11.83430 -11.73842 -11.35341 -11.19563 -11.09317 -10.87887 -10.14257 -9.62784 -9.07537 -8.97586 -8.95934 -6.55518 0.38423 0.39518 0.59776 0.66652 1.19218 1.20840 1.26246 1.31553 1.40806 1.52101 1.58461 2.03668 2.24318 2.47118 2.97733 3.30247 3.63053 4.00292 4.04255 4.07362 4.12949 4.18808 4.28279 4.35267 4.36425 4.68400 4.69639 4.77233 4.90044 5.07834 5.31382 5.40001 5.64071 5.75406 5.77016 5.96718 6.22292 6.45406 6.52387 6.66902 6.69317 7.18773 8.09514 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.003650 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.452894 B = 7670.165163 C = 9182.226098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.056 3.944 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.466 4.466 8 H 0.072 0.928 9 C 0.080 3.920 10 C -0.235 4.235 11 C -0.066 4.066 12 C 0.028 3.972 13 N -0.641 5.641 14 C 0.482 3.518 15 O -0.561 6.561 16 C 0.109 3.891 17 N -0.594 5.594 18 C 0.159 3.841 19 S -0.273 6.273 20 C -0.085 4.085 21 C 0.514 3.486 22 O -0.557 6.557 23 C 0.000 4.000 24 Cl -0.066 7.066 25 C -0.192 4.192 26 H 0.296 0.704 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.420 0.580 30 H 0.167 0.833 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.011 1.627 0.220 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.160 4.160 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.495 4.495 8 H 0.090 0.910 9 C 0.077 3.923 10 C -0.255 4.255 11 C -0.086 4.086 12 C -0.067 4.067 13 N -0.287 5.287 14 C 0.269 3.731 15 O -0.439 6.439 16 C -0.018 4.018 17 N -0.325 5.325 18 C -0.073 4.073 19 S -0.048 6.048 20 C -0.236 4.236 21 C 0.301 3.699 22 O -0.436 6.436 23 C -0.029 4.029 24 Cl -0.037 7.037 25 C -0.212 4.212 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.135 0.865 29 H 0.258 0.742 30 H 0.185 0.815 31 H 0.150 0.850 32 H 0.132 0.868 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.179 0.821 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 24.198 3.151 0.313 24.404 hybrid contribution -0.410 -0.821 -0.524 1.057 sum 23.788 2.329 -0.211 23.903 Atomic orbital electron populations 1.69665 1.08701 1.31562 1.36631 1.26621 0.95316 1.03472 0.90611 0.85623 0.79348 0.77532 0.79245 1.19313 1.20059 1.18263 1.19448 0.92028 0.95363 1.42688 0.91030 1.17740 0.93124 0.91510 0.89943 1.20872 0.95326 1.04263 1.05015 1.20509 0.92483 0.97511 0.98138 1.16826 0.84035 1.01304 1.04562 1.42839 1.06012 1.09870 1.70026 1.21961 0.91952 0.83199 0.75979 1.90726 1.70161 1.32708 1.50275 1.21562 0.88201 0.83346 1.08706 1.47411 1.63672 1.14864 1.06573 1.24371 1.06656 0.86552 0.89743 1.88609 1.97313 1.12604 1.06281 1.24237 1.09230 0.93759 0.96373 1.20622 0.76937 0.89322 0.83056 1.90777 1.51225 1.65642 1.35992 1.20252 0.91556 0.93548 0.97549 1.98282 1.68352 1.55417 1.81636 1.20715 0.91099 1.04149 1.05246 0.89307 0.88273 0.86488 0.74198 0.81518 0.85026 0.86836 0.83273 0.84396 0.82104 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.27 13.93 21.82 0.30 -44.96 16 2 C 0.06 2.96 5.47 85.24 0.47 3.43 16 3 Si 0.96 44.36 24.40 68.60 1.67 46.03 16 4 H -0.27 -12.15 6.66 99.48 0.66 -11.49 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -12.55 6.67 99.48 0.66 -11.89 16 7 C -0.47 -25.33 9.59 23.39 0.22 -25.11 16 8 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 9 C 0.08 4.00 5.13 -21.28 -0.11 3.89 16 10 C -0.23 -11.47 6.94 22.49 0.16 -11.32 16 11 C -0.07 -2.96 8.62 22.13 0.19 -2.77 16 12 C 0.03 1.06 6.32 38.58 0.24 1.31 16 13 N -0.64 -18.09 5.02 -303.02 -1.52 -19.61 16 14 C 0.48 13.51 7.74 87.66 0.68 14.19 16 15 O -0.56 -21.45 13.78 -3.05 -0.04 -21.49 16 16 C 0.11 1.76 6.04 85.63 0.52 2.28 16 17 N -0.59 -10.84 2.32 -836.26 -1.94 -12.79 16 18 C 0.16 2.11 7.84 127.67 1.00 3.12 16 19 S -0.27 -4.83 23.56 -56.49 -1.33 -6.16 16 20 C -0.09 -1.35 7.46 71.51 0.53 -0.82 16 21 C 0.51 11.60 7.67 88.24 0.68 12.28 16 22 O -0.56 -17.02 16.94 -3.04 -0.05 -17.07 16 23 C 0.00 -0.02 6.30 22.18 0.14 0.12 16 24 Cl -0.07 -1.85 27.91 -2.72 -0.08 -1.93 16 25 C -0.19 -8.39 9.50 22.49 0.21 -8.18 16 26 H 0.30 14.42 8.30 -92.71 -0.77 13.65 16 27 H 0.10 4.94 4.41 -2.91 -0.01 4.93 16 28 H 0.12 5.37 6.14 -2.91 -0.02 5.36 16 29 H 0.42 8.66 8.04 -92.71 -0.75 7.91 16 30 H 0.17 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.13 1.93 7.53 -2.39 -0.02 1.92 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.16 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -72.29 334.12 2.27 -70.02 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.33 Total: 15.53 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 4.93 Total: -7.57 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -3.16 Total: -77.36 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.09 Total: -38.56 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.67 Total: 46.03 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.33 Total: -6.16 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -72.29 2.27 -70.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452648598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.930 kcal (2) G-P(sol) polarization free energy of solvation -72.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds