Wall clock time and date at job start Sat Apr 11 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48500 * 109.46991 * 274.98397 * 3 2 1 5 5 H 1.48496 * 109.47091 * 34.98714 * 3 2 1 6 6 H 1.48501 * 109.47167 * 154.98715 * 3 2 1 7 7 C 1.38819 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99664 * 198.70837 * 7 2 1 9 9 N 1.36934 * 119.99602 * 18.98760 * 7 2 1 10 10 C 1.47078 * 120.88476 * 25.53245 * 9 7 2 11 11 C 1.53689 * 108.27848 * 128.75785 * 10 9 7 12 12 N 1.46905 * 109.25715 * 54.07867 * 11 10 9 13 13 C 1.46905 * 110.99908 * 172.61070 * 12 11 10 14 14 C 1.50694 * 109.47151 * 199.80920 * 13 12 11 15 15 C 1.38292 * 119.97745 * 254.74063 * 14 13 12 16 16 C 1.38238 * 120.11644 * 179.97438 * 15 14 13 17 17 C 1.38186 * 120.07601 * 0.02562 * 16 15 14 18 18 C 1.38674 * 119.95333 * 0.02562 * 17 16 15 19 19 O 1.35915 * 120.05981 * 179.97438 * 18 17 16 20 20 C 1.38203 * 119.97967 * 74.46020 * 14 13 12 21 21 Br 1.89095 * 120.03323 * 0.02812 * 20 14 13 22 22 C 1.46898 * 111.26996 * 296.75735 * 12 11 10 23 23 C 1.47076 * 120.87749 * 205.81381 * 9 7 2 24 24 H 0.96997 * 119.99616 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.62518 * 248.52171 * 10 9 7 26 26 H 1.08994 * 109.62607 * 9.10115 * 10 9 7 27 27 H 1.09005 * 109.64508 * 294.08185 * 11 10 9 28 28 H 1.08994 * 109.44960 * 173.96294 * 11 10 9 29 29 H 1.09003 * 109.47001 * 319.80509 * 13 12 11 30 30 H 1.08996 * 109.47185 * 79.80298 * 13 12 11 31 31 H 1.08002 * 119.93934 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.95760 * 180.02562 * 16 15 14 33 33 H 1.08002 * 120.02290 * 180.02562 * 17 16 15 34 34 H 0.96699 * 113.99491 * 90.00160 * 19 18 17 35 35 H 1.08992 * 109.49433 * 303.14444 * 22 12 11 36 36 H 1.09001 * 109.51245 * 183.07580 * 22 12 11 37 37 H 1.09000 * 109.63071 * 350.89209 * 23 9 7 38 38 H 1.09005 * 109.63201 * 111.47474 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0475 -1.2267 0.3006 9 7 1.3814 -2.3559 -0.3848 10 6 0.2285 -2.3188 -1.2973 11 6 0.4927 -3.3027 -2.4480 12 7 0.8018 -4.6269 -1.8920 13 6 0.8888 -5.6370 -2.9552 14 6 0.7188 -7.0102 -2.3584 15 6 1.8153 -7.8396 -2.2097 16 6 1.6627 -9.0997 -1.6621 17 6 0.4134 -9.5344 -1.2623 18 6 -0.6884 -8.7056 -1.4111 19 8 -1.9182 -9.1312 -1.0190 20 6 -0.5320 -7.4378 -1.9549 21 35 -2.0300 -6.3008 -2.1519 22 6 2.0345 -4.5952 -1.0938 23 6 1.8372 -3.6647 0.1077 24 1 -0.4849 0.8401 -0.0004 25 1 -0.6732 -2.6127 -0.7600 26 1 0.1090 -1.3112 -1.6953 27 1 1.3360 -2.9524 -3.0434 28 1 -0.3940 -3.3707 -3.0782 29 1 0.1030 -5.4601 -3.6896 30 1 1.8621 -5.5699 -3.4412 31 1 2.7927 -7.5022 -2.5218 32 1 2.5209 -9.7452 -1.5467 33 1 0.2952 -10.5189 -0.8342 34 1 -2.1324 -8.9212 -0.0997 35 1 2.8562 -4.2269 -1.7080 36 1 2.2660 -5.6003 -0.7414 37 1 2.7818 -3.5474 0.6388 38 1 1.0871 -4.0855 0.7774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459318167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:13 Heat of formation + Delta-G solvation = 24.775484 kcal Electronic energy + Delta-G solvation = -21831.605359 eV Core-core repulsion = 18528.499641 eV Total energy + Delta-G solvation = -3303.105718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.01976 -38.13467 -36.79489 -34.48527 -32.44205 -31.35033 -30.54158 -29.64667 -28.86175 -27.12707 -24.74058 -22.79956 -22.47184 -22.35596 -21.09203 -19.05795 -18.18090 -16.78224 -16.39501 -16.14335 -15.35877 -15.12289 -14.57103 -14.31879 -13.99427 -13.78518 -13.43042 -13.18279 -13.08119 -12.69607 -12.45425 -12.04663 -11.85951 -11.54471 -11.26169 -11.08780 -10.75000 -10.72490 -10.68881 -10.46142 -10.27623 -10.05890 -9.82475 -9.69756 -9.59895 -8.80776 -8.58525 -8.46975 -7.78257 -6.65263 -5.76082 -3.15452 0.97752 1.07467 1.84427 3.34217 3.38871 3.46099 3.47434 4.01221 4.42346 4.52712 4.67837 4.81877 5.08526 5.12601 5.33498 5.40534 5.47162 5.48601 5.63892 5.80651 5.92373 5.99067 6.04175 6.15001 6.17361 6.23497 6.34205 6.37455 6.54595 6.56331 6.72246 6.96054 7.28061 7.44039 7.59848 7.68939 7.73557 7.84825 8.45184 9.23470 9.87508 10.46033 11.32587 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.003826 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.388831 B = 7316.741483 C = 8068.138453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.180 3.820 11 C 0.039 3.961 12 N -0.517 5.517 13 C 0.082 3.918 14 C -0.026 4.026 15 C -0.121 4.121 16 C -0.093 4.093 17 C -0.146 4.146 18 C 0.127 3.873 19 O -0.490 6.490 20 C -0.095 4.095 21 Br -0.024 7.024 22 C 0.044 3.956 23 C 0.151 3.849 24 H 0.253 0.747 25 H 0.028 0.972 26 H 0.087 0.913 27 H 0.024 0.976 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.393 0.607 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -19.288 -5.339 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.054 3.946 11 C -0.090 4.090 12 N -0.242 5.242 13 C -0.046 4.046 14 C -0.029 4.029 15 C -0.140 4.140 16 C -0.112 4.112 17 C -0.166 4.166 18 C 0.080 3.920 19 O -0.300 6.300 20 C -0.176 4.176 21 Br 0.063 6.937 22 C -0.085 4.085 23 C 0.024 3.976 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.105 0.895 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.250 0.750 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.028 -19.005 -5.649 19.930 hybrid contribution 1.433 0.925 0.030 1.706 sum -0.596 -18.080 -5.620 18.942 Atomic orbital electron populations 1.70055 1.05184 1.25390 1.53987 1.24977 0.95239 0.98280 1.01200 0.86301 0.79187 0.83950 0.77530 1.21583 1.21816 1.20467 1.19209 0.93212 0.85140 1.40516 0.91656 1.44150 1.35427 1.00840 1.51364 1.20935 0.89078 0.96713 0.87849 1.22975 0.98553 0.88590 0.98871 1.61922 1.35022 1.05822 1.21418 1.21169 1.01047 0.88535 0.93888 1.19741 0.91019 0.96020 0.96109 1.21111 0.98294 0.94047 1.00568 1.21073 0.96904 0.95906 0.97291 1.21315 0.91735 1.00516 1.03024 1.18165 0.85156 0.90560 0.98105 1.84812 1.30527 1.80710 1.33954 1.22229 0.94175 0.94151 1.07053 1.96735 1.36639 1.64107 1.96268 1.22660 0.89735 0.99271 0.96856 1.20937 0.97585 0.86511 0.92554 0.93680 0.95438 0.89480 0.95743 0.92050 0.89654 0.93913 0.85290 0.85233 0.84977 0.75028 0.95471 0.92235 0.92814 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 11.20 55.49 0.62 -25.68 16 2 C 0.00 0.04 4.89 -17.43 -0.09 -0.04 16 3 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.93 9.63 -15.06 -0.15 -7.08 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -15.06 3.03 -171.74 -0.52 -15.58 16 10 C 0.18 4.36 5.47 -3.37 -0.02 4.34 16 11 C 0.04 0.76 5.61 -3.46 -0.02 0.74 16 12 N -0.52 -9.00 4.26 -235.47 -1.00 -10.00 16 13 C 0.08 1.17 4.40 -4.98 -0.02 1.15 16 14 C -0.03 -0.35 4.80 -104.62 -0.50 -0.85 16 15 C -0.12 -1.34 9.07 -39.56 -0.36 -1.70 16 16 C -0.09 -0.90 10.04 -39.60 -0.40 -1.29 16 17 C -0.15 -1.49 9.99 -39.44 -0.39 -1.89 16 18 C 0.13 1.54 6.69 -39.20 -0.26 1.28 16 19 O -0.49 -5.37 12.84 -19.47 -0.25 -5.62 16 20 C -0.10 -1.31 6.23 -39.37 -0.25 -1.55 16 21 Br -0.02 -0.34 31.36 -68.01 -2.13 -2.48 16 22 C 0.04 0.79 5.45 -3.70 -0.02 0.77 16 23 C 0.15 3.23 6.69 -3.60 -0.02 3.20 16 24 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 2.33 6.10 -51.93 -0.32 2.02 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.10 7.90 -51.93 -0.41 0.69 16 29 H 0.09 1.22 7.06 -51.93 -0.37 0.85 16 30 H 0.04 0.58 7.81 -51.93 -0.41 0.17 16 31 H 0.13 1.23 8.00 -52.49 -0.42 0.81 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.39 2.83 9.06 45.56 0.41 3.24 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.94 6.98 -51.93 -0.36 0.58 16 37 H 0.05 1.11 7.95 -51.93 -0.41 0.70 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -31.02 328.32 -10.23 -41.25 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.37 Total: -0.63 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.49 Total: -2.93 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.90 Total: -51.26 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.25 Total: -5.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.13 Total: -2.48 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.02 -10.23 -41.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459318167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.022 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds