Wall clock time and date at job start Sat Apr 11 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48500 * 109.46991 * 274.98397 * 3 2 1 5 5 H 1.48496 * 109.47091 * 34.98714 * 3 2 1 6 6 H 1.48501 * 109.47167 * 154.98715 * 3 2 1 7 7 C 1.38819 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99664 * 198.70837 * 7 2 1 9 9 N 1.36934 * 119.99602 * 18.98760 * 7 2 1 10 10 C 1.47078 * 120.88476 * 25.53245 * 9 7 2 11 11 C 1.53689 * 108.27848 * 128.75785 * 10 9 7 12 12 N 1.46905 * 109.25715 * 54.07867 * 11 10 9 13 13 C 1.46905 * 110.99908 * 172.61070 * 12 11 10 14 14 C 1.50694 * 109.47151 * 199.80920 * 13 12 11 15 15 C 1.38292 * 119.97745 * 254.74063 * 14 13 12 16 16 C 1.38238 * 120.11644 * 179.97438 * 15 14 13 17 17 C 1.38186 * 120.07601 * 0.02562 * 16 15 14 18 18 C 1.38674 * 119.95333 * 0.02562 * 17 16 15 19 19 O 1.35915 * 120.05981 * 179.97438 * 18 17 16 20 20 C 1.38203 * 119.97967 * 74.46020 * 14 13 12 21 21 Br 1.89095 * 120.03323 * 0.02812 * 20 14 13 22 22 C 1.46898 * 111.26996 * 296.75735 * 12 11 10 23 23 C 1.47076 * 120.87749 * 205.81381 * 9 7 2 24 24 H 0.96997 * 119.99616 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.62518 * 248.52171 * 10 9 7 26 26 H 1.08994 * 109.62607 * 9.10115 * 10 9 7 27 27 H 1.09005 * 109.64508 * 294.08185 * 11 10 9 28 28 H 1.08994 * 109.44960 * 173.96294 * 11 10 9 29 29 H 1.09003 * 109.47001 * 319.80509 * 13 12 11 30 30 H 1.08996 * 109.47185 * 79.80298 * 13 12 11 31 31 H 1.08002 * 119.93934 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.95760 * 180.02562 * 16 15 14 33 33 H 1.08002 * 120.02290 * 180.02562 * 17 16 15 34 34 H 0.96699 * 113.99491 * 90.00160 * 19 18 17 35 35 H 1.08992 * 109.49433 * 303.14444 * 22 12 11 36 36 H 1.09001 * 109.51245 * 183.07580 * 22 12 11 37 37 H 1.09000 * 109.63071 * 350.89209 * 23 9 7 38 38 H 1.09005 * 109.63201 * 111.47474 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0475 -1.2267 0.3006 9 7 1.3814 -2.3559 -0.3848 10 6 0.2285 -2.3188 -1.2973 11 6 0.4927 -3.3027 -2.4480 12 7 0.8018 -4.6269 -1.8920 13 6 0.8888 -5.6370 -2.9552 14 6 0.7188 -7.0102 -2.3584 15 6 1.8153 -7.8396 -2.2097 16 6 1.6627 -9.0997 -1.6621 17 6 0.4134 -9.5344 -1.2623 18 6 -0.6884 -8.7056 -1.4111 19 8 -1.9182 -9.1312 -1.0190 20 6 -0.5320 -7.4378 -1.9549 21 35 -2.0300 -6.3008 -2.1519 22 6 2.0345 -4.5952 -1.0938 23 6 1.8372 -3.6647 0.1077 24 1 -0.4849 0.8401 -0.0004 25 1 -0.6732 -2.6127 -0.7600 26 1 0.1090 -1.3112 -1.6953 27 1 1.3360 -2.9524 -3.0434 28 1 -0.3940 -3.3707 -3.0782 29 1 0.1030 -5.4601 -3.6896 30 1 1.8621 -5.5699 -3.4412 31 1 2.7927 -7.5022 -2.5218 32 1 2.5209 -9.7452 -1.5467 33 1 0.2952 -10.5189 -0.8342 34 1 -2.1324 -8.9212 -0.0997 35 1 2.8562 -4.2269 -1.7080 36 1 2.2660 -5.6003 -0.7414 37 1 2.7818 -3.5474 0.6388 38 1 1.0871 -4.0855 0.7774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459318167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:13 Heat of formation + Delta-G solvation = 4.023828 kcal Electronic energy + Delta-G solvation = -21832.505218 eV Core-core repulsion = 18528.499641 eV Total energy + Delta-G solvation = -3304.005577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92640 -39.55058 -37.80928 -36.10776 -33.75455 -32.86055 -31.87654 -31.20838 -29.77607 -28.66733 -26.29653 -24.34561 -24.11337 -23.31794 -22.13121 -20.78875 -19.04589 -18.71079 -17.27118 -17.09645 -16.86034 -16.37290 -16.14562 -15.66225 -15.35949 -15.27427 -14.98353 -14.66446 -14.59080 -13.83173 -13.53865 -13.36068 -13.05062 -12.97632 -12.80519 -12.61734 -12.47132 -12.27163 -12.04654 -11.91428 -11.69475 -11.60217 -11.52281 -11.37111 -10.87752 -10.56970 -9.70038 -9.49236 -9.20014 -8.67574 -7.86637 -5.29683 0.12735 0.21854 0.86909 1.46788 1.48104 1.57485 2.48841 2.51936 3.12599 3.21893 3.28555 3.70542 3.74962 3.98257 4.20782 4.26012 4.30729 4.37630 4.46500 4.52806 4.63806 4.68632 4.72157 4.76953 4.90478 4.91960 5.05562 5.20007 5.24197 5.34149 5.38327 5.46383 5.62651 5.70429 5.78226 6.21035 6.27015 6.38302 6.73129 7.14057 7.85454 8.39840 9.20078 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.003826 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.388831 B = 7316.741483 C = 8068.138453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.612 5.612 10 C 0.190 3.810 11 C 0.057 3.943 12 N -0.524 5.524 13 C 0.087 3.913 14 C -0.044 4.044 15 C -0.122 4.122 16 C -0.083 4.083 17 C -0.143 4.143 18 C 0.117 3.883 19 O -0.498 6.498 20 C -0.117 4.117 21 Br -0.048 7.048 22 C 0.059 3.941 23 C 0.147 3.853 24 H 0.249 0.751 25 H -0.004 1.004 26 H 0.054 0.946 27 H 0.022 0.978 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.148 0.852 32 H 0.165 0.835 33 H 0.157 0.843 34 H 0.407 0.593 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 -21.453 -5.710 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.064 3.936 11 C -0.072 4.072 12 N -0.249 5.249 13 C -0.040 4.040 14 C -0.047 4.047 15 C -0.141 4.141 16 C -0.101 4.101 17 C -0.162 4.162 18 C 0.070 3.930 19 O -0.311 6.311 20 C -0.197 4.197 21 Br 0.038 6.962 22 C -0.070 4.070 23 C 0.022 3.978 24 H 0.058 0.942 25 H 0.014 0.986 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.166 0.834 32 H 0.182 0.818 33 H 0.174 0.826 34 H 0.266 0.734 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 0.054 -21.208 -6.017 22.045 hybrid contribution 0.787 1.455 0.208 1.667 sum 0.841 -19.754 -5.809 20.607 Atomic orbital electron populations 1.70216 1.06703 1.25774 1.55451 1.25741 0.95960 1.01408 1.01458 0.85262 0.78269 0.79683 0.77313 1.21354 1.22287 1.19180 1.19552 0.93514 0.86279 1.39916 0.91384 1.44421 1.35448 1.01766 1.51943 1.20649 0.87848 0.96285 0.88799 1.22594 0.99066 0.88835 0.96672 1.61804 1.35117 1.05166 1.22801 1.21126 1.01747 0.88218 0.92907 1.19698 0.91682 0.95768 0.97535 1.21371 0.98271 0.94351 1.00144 1.21480 0.97764 0.95560 0.95329 1.21654 0.91282 1.01109 1.02133 1.18380 0.86030 0.90346 0.98214 1.84771 1.30463 1.80579 1.35298 1.22385 0.93749 0.94767 1.08820 1.96705 1.38110 1.64946 1.96462 1.22444 0.89752 0.99519 0.95259 1.21076 0.97110 0.85508 0.94154 0.94156 0.98612 0.92718 0.95942 0.90784 0.89968 0.92388 0.83425 0.81767 0.82551 0.73397 0.95387 0.89498 0.92248 0.97269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 11.20 21.65 0.24 -56.11 16 2 C -0.05 -2.85 4.89 84.86 0.42 -2.43 16 3 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.26 -14.64 9.63 84.04 0.81 -13.83 16 8 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 9 N -0.61 -31.51 3.03 -697.25 -2.12 -33.62 16 10 C 0.19 9.52 5.47 86.50 0.47 9.99 16 11 C 0.06 2.24 5.61 86.53 0.49 2.72 16 12 N -0.52 -17.71 4.26 -898.88 -3.83 -21.54 16 13 C 0.09 2.35 4.40 85.55 0.38 2.73 16 14 C -0.04 -1.08 4.80 -19.86 -0.10 -1.17 16 15 C -0.12 -2.25 9.07 22.28 0.20 -2.05 16 16 C -0.08 -1.23 10.04 22.26 0.22 -1.00 16 17 C -0.14 -2.39 9.99 22.36 0.22 -2.17 16 18 C 0.12 2.60 6.69 22.52 0.15 2.75 16 19 O -0.50 -10.22 12.84 -92.59 -1.19 -11.41 16 20 C -0.12 -3.04 6.23 22.40 0.14 -2.90 16 21 Br -0.05 -1.40 31.36 -20.37 -0.64 -2.04 16 22 C 0.06 2.00 5.45 86.39 0.47 2.47 16 23 C 0.15 6.26 6.69 86.35 0.58 6.84 16 24 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.05 3.07 6.10 -2.39 -0.01 3.05 16 27 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.07 2.67 7.90 -2.39 -0.02 2.65 16 29 H 0.08 2.26 7.06 -2.39 -0.02 2.24 16 30 H 0.06 1.39 7.81 -2.39 -0.02 1.38 16 31 H 0.15 2.14 8.00 -2.91 -0.02 2.12 16 32 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.41 5.40 9.06 -74.06 -0.67 4.73 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 2.48 6.98 -2.39 -0.02 2.46 16 37 H 0.06 2.41 7.95 -2.39 -0.02 2.39 16 38 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -68.34 328.32 -0.64 -68.98 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.40 Total: 6.51 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 4.45 Total: 1.94 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -5.70 Total: -111.28 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.19 Total: -11.41 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 35 Polarization: -1.40 SS G_CDS: -0.64 Total: -2.04 kcal Total: -68.34 -0.64 -68.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459318167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.008 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds