Wall clock time and date at job start Sat Apr 11 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99916 * 2 1 4 4 H 1.48503 * 109.47318 * 269.99993 * 3 2 1 5 5 H 1.48501 * 109.47267 * 29.99558 * 3 2 1 6 6 H 1.48499 * 109.47360 * 150.00040 * 3 2 1 7 7 C 1.37874 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00235 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47140 * 179.97438 * 9 7 2 11 11 S 1.65601 * 119.99830 * 164.99681 * 10 9 7 12 12 O 1.42095 * 106.40389 * 311.46088 * 11 10 9 13 13 O 1.42102 * 106.40148 * 178.53735 * 11 10 9 14 14 C 1.76205 * 107.21867 * 65.00193 * 11 10 9 15 15 C 1.38830 * 120.35108 * 269.97638 * 14 11 10 16 16 C 1.38381 * 118.48403 * 180.02562 * 15 14 11 17 17 C 1.38925 * 119.10900 * 0.02562 * 16 15 14 18 18 O 1.35677 * 119.68043 * 180.02562 * 17 16 15 19 19 C 1.42901 * 116.99404 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46863 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.46949 * 59.99695 * 20 19 18 22 22 F 1.39898 * 109.47033 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.46979 * 300.00261 * 20 19 18 24 24 N 1.32247 * 120.62932 * 0.02562 * 17 16 15 25 25 C 1.31964 * 121.65048 * 359.97438 * 24 17 16 26 26 H 0.96995 * 120.00699 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47191 * 59.99311 * 9 7 2 28 28 H 1.09001 * 109.46715 * 299.99495 * 9 7 2 29 29 H 0.96991 * 119.99966 * 344.99692 * 10 9 7 30 30 H 1.08004 * 120.75912 * 0.02562 * 15 14 11 31 31 H 1.08001 * 120.44529 * 180.02562 * 16 15 14 32 32 H 1.08999 * 109.47131 * 300.00061 * 19 18 17 33 33 H 1.08997 * 109.47268 * 60.00924 * 19 18 17 34 34 H 1.08004 * 119.58141 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 16 1.6882 -5.1422 0.3718 12 8 0.9253 -5.0301 1.5653 13 8 2.8238 -5.9880 0.2518 14 6 0.5646 -5.6356 -0.8926 15 6 -0.7928 -5.3733 -0.7662 16 6 -1.6407 -5.7784 -1.7821 17 6 -1.1080 -6.4303 -2.8873 18 8 -1.9286 -6.8320 -3.8903 19 6 -1.3200 -7.4964 -4.9995 20 6 -2.3948 -7.8706 -6.0221 21 9 -3.0376 -6.7110 -6.4685 22 9 -1.7991 -8.5216 -7.1077 23 9 -3.3307 -8.7219 -5.4247 24 7 0.1911 -6.6630 -2.9709 25 6 1.0243 -6.2889 -2.0184 26 1 -0.4851 0.8399 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 3.1349 -3.4540 -0.2169 30 1 -1.1784 -4.8648 0.1051 31 1 -2.7021 -5.5902 -1.7168 32 1 -0.5912 -6.8330 -5.4651 33 1 -0.8190 -8.3997 -4.6516 34 1 2.0794 -6.4956 -2.1213 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487358879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:16 Heat of formation + Delta-G solvation = -252.720302 kcal Electronic energy + Delta-G solvation = -26755.185671 eV Core-core repulsion = 21978.828390 eV Total energy + Delta-G solvation = -4776.357281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.054 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.26998 -48.80852 -48.75149 -41.98694 -39.45066 -38.29852 -36.92362 -36.45602 -34.11465 -33.86426 -32.70931 -30.70228 -28.70800 -25.58759 -25.07982 -24.46252 -23.96834 -20.68064 -20.41187 -19.81483 -19.35967 -19.20759 -19.14806 -18.61643 -17.79197 -17.67981 -17.40682 -16.98960 -16.30873 -15.86822 -15.64719 -15.64032 -15.33850 -15.18404 -14.94459 -14.92773 -14.89838 -14.85706 -14.77139 -14.49683 -14.28504 -14.05520 -13.56428 -13.20855 -13.09993 -12.96040 -12.80696 -12.73765 -12.52843 -12.33356 -12.07121 -11.39796 -11.34186 -11.09008 -10.81993 -10.18653 -10.07407 -8.23487 -6.34419 -0.67926 -0.42259 -0.06284 0.91067 1.46385 1.47775 1.58007 1.76891 2.04722 2.33539 2.44588 2.55437 2.77342 2.82599 2.85229 3.12232 3.16281 3.25330 3.71269 3.77663 3.87876 3.92160 4.03973 4.37119 4.52893 4.62092 4.68822 5.02492 5.29813 5.34141 5.61985 5.76594 6.00274 6.30560 6.34069 6.80000 7.35272 8.87310 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.002860 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.674852 B = 9786.823350 C =11087.215104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.257 3.743 10 N -1.101 6.101 11 S 2.722 3.278 12 O -0.989 6.989 13 O -0.979 6.979 14 C -0.765 4.765 15 C 0.051 3.949 16 C -0.199 4.199 17 C 0.361 3.639 18 O -0.293 6.293 19 C 0.020 3.980 20 C 0.470 3.530 21 F -0.182 7.182 22 F -0.166 7.166 23 F -0.181 7.181 24 N -0.553 5.553 25 C 0.243 3.757 26 H 0.268 0.732 27 H 0.013 0.987 28 H 0.017 0.983 29 H 0.420 0.580 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.879 -15.291 -10.716 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.093 0.907 9 C 0.132 3.868 10 N -0.863 5.863 11 S 2.811 3.189 12 O -0.979 6.979 13 O -0.969 6.969 14 C -0.854 4.854 15 C 0.026 3.974 16 C -0.220 4.220 17 C 0.183 3.817 18 O -0.199 6.199 19 C -0.057 4.057 20 C 0.415 3.585 21 F -0.164 7.164 22 F -0.148 7.148 23 F -0.162 7.162 24 N -0.277 5.277 25 C 0.085 3.915 26 H 0.077 0.923 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.256 0.744 30 H 0.183 0.817 31 H 0.194 0.806 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.024 -16.133 -10.775 19.634 hybrid contribution -0.296 1.392 -0.258 1.446 sum -3.320 -14.741 -11.033 18.709 Atomic orbital electron populations 1.70026 1.07501 1.28330 1.50470 1.25822 0.95788 1.03000 0.94415 0.85399 0.78612 0.78311 0.78406 1.19811 1.21048 1.18835 1.21632 0.94218 0.90989 1.51940 0.90725 1.18696 0.88018 0.84296 0.95752 1.55275 1.19664 1.23483 1.87891 1.00819 0.72684 0.71939 0.73482 1.93533 1.73290 1.86597 1.44491 1.93527 1.49804 1.66194 1.87382 1.31753 1.12220 1.20435 1.21032 1.21450 0.90608 0.88140 0.97228 1.21376 1.03736 1.04056 0.92812 1.20045 0.87252 0.88017 0.86423 1.86206 1.34076 1.71539 1.28082 1.23918 0.93179 1.02985 0.85573 1.20042 0.82070 0.74805 0.81536 1.93233 1.83473 1.49299 1.90367 1.93243 1.83496 1.81660 1.56359 1.93228 1.68017 1.71607 1.83349 1.67422 1.02772 1.25923 1.31621 1.22548 1.00203 0.84562 0.84169 0.92318 0.96884 0.96507 0.74410 0.81727 0.80601 0.85275 0.84810 0.78230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.12 13.29 21.45 0.28 -50.84 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.97 40.90 29.54 68.60 2.03 42.93 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.55 -27.92 9.27 25.60 0.24 -27.68 16 8 H 0.07 3.58 7.65 -2.91 -0.02 3.55 16 9 C 0.26 11.95 5.98 85.63 0.51 12.46 16 10 N -1.10 -40.29 5.99 -190.79 -1.14 -41.43 16 11 S 2.72 89.64 5.75 -56.49 -0.32 89.31 16 12 O -0.99 -38.97 16.83 -128.00 -2.15 -41.12 16 13 O -0.98 -32.59 17.30 -128.00 -2.21 -34.81 16 14 C -0.76 -21.79 5.96 22.36 0.13 -21.66 16 15 C 0.05 1.41 9.64 22.45 0.22 1.63 16 16 C -0.20 -4.76 10.04 22.47 0.23 -4.53 16 17 C 0.36 8.60 7.49 84.80 0.63 9.23 16 18 O -0.29 -6.09 10.00 -89.95 -0.90 -6.99 16 19 C 0.02 0.31 5.27 71.98 0.38 0.69 16 20 C 0.47 7.58 3.32 71.98 0.24 7.82 16 21 F -0.18 -3.54 17.26 44.97 0.78 -2.77 16 22 F -0.17 -2.53 17.32 44.97 0.78 -1.75 16 23 F -0.18 -3.31 17.26 44.97 0.78 -2.54 16 24 N -0.55 -13.24 9.22 -308.95 -2.85 -16.09 16 25 C 0.24 6.06 10.68 84.63 0.90 6.96 16 26 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.02 0.86 7.75 -2.39 -0.02 0.84 16 29 H 0.42 13.73 8.54 -96.75 -0.83 12.91 16 30 H 0.17 4.43 7.71 -2.91 -0.02 4.40 16 31 H 0.18 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.13 1.70 8.10 -2.39 -0.02 1.68 16 33 H 0.13 1.60 8.10 -2.39 -0.02 1.58 16 34 H 0.20 3.96 7.62 -2.91 -0.02 3.94 16 Total: -1.00 -65.25 334.15 -0.64 -65.89 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.36 Total: 14.30 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.94 Total: -14.10 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -3.71 Total: -108.35 kcal Atomic # 8 Polarization: -77.65 SS G_CDS: -5.27 Total: -82.92 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 2.33 Total: -7.06 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 89.64 SS G_CDS: -0.32 Total: 89.31 kcal Total: -65.25 -0.64 -65.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487358879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.833 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds