Wall clock time and date at job start Sat Apr 11 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99944 * 2 1 4 4 N 1.46504 * 109.47196 * 124.99627 * 3 2 1 5 5 C 1.46490 * 120.00094 * 274.72348 * 4 3 2 6 6 C 1.50707 * 109.47380 * 275.50387 * 5 4 3 7 7 H 1.08003 * 119.99204 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00309 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99939 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00079 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47413 * 59.99525 * 10 8 6 12 12 H 1.48500 * 109.47386 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46971 * 299.99922 * 10 8 6 14 14 S 1.65600 * 119.99577 * 94.99965 * 4 3 2 15 15 O 1.42094 * 106.40842 * 17.91016 * 14 4 3 16 16 O 1.42108 * 106.39794 * 150.83233 * 14 4 3 17 17 C 1.76203 * 107.21947 * 264.36757 * 14 4 3 18 18 C 1.37922 * 119.92761 * 345.41033 * 17 14 4 19 19 C 1.39641 * 119.85292 * 179.76732 * 18 17 14 20 20 C 1.43206 * 120.13306 * 180.23187 * 19 18 17 21 21 N 5.44227 * 95.90110 * 135.65665 * 2 1 3 22 22 C 1.39681 * 119.73157 * 0.50397 * 19 18 17 23 23 C 1.37876 * 119.85595 * 359.75051 * 22 19 18 24 24 C 1.38481 * 119.93356 * 165.67949 * 17 14 4 25 25 Cl 1.73606 * 119.85851 * 0.02562 * 24 17 14 26 26 H 1.08000 * 119.99753 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00071 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99677 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47050 * 4.99567 * 3 2 1 30 30 H 1.09004 * 109.46565 * 244.99464 * 3 2 1 31 31 H 1.09000 * 109.47057 * 35.50058 * 5 4 3 32 32 H 1.09003 * 109.47339 * 155.50435 * 5 4 3 33 33 H 0.97003 * 119.99919 * 180.02562 * 9 8 6 34 34 H 1.07998 * 120.06908 * 359.97438 * 18 17 14 35 35 H 1.07996 * 120.07265 * 179.72684 * 22 19 18 36 36 H 1.07999 * 119.92640 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5299 1.7679 2.4509 6 6 2.5944 3.2713 2.5346 7 1 2.9462 3.8445 1.6895 8 6 2.2054 3.9148 3.6902 9 7 1.7775 3.2167 4.7193 10 14 2.2847 5.7782 3.7937 11 1 1.4166 6.3697 2.7441 12 1 1.8146 6.2202 5.1312 13 1 3.6855 6.2262 3.5878 14 16 4.5712 0.8759 0.9174 15 8 4.8177 0.9276 -0.4811 16 8 5.3329 1.6073 1.8684 17 6 4.6916 -0.8196 1.3815 18 6 3.6716 -1.4114 2.0968 19 6 3.7665 -2.7565 2.4596 20 6 2.7087 -3.3783 3.1980 21 7 1.8695 -3.8715 3.7838 22 6 4.8999 -3.4915 2.1042 23 6 5.9151 -2.8870 1.3937 24 6 5.8127 -1.5537 1.0321 25 17 7.0957 -0.7995 0.1384 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6213 1.4024 -0.9314 31 1 1.5015 1.4395 2.6012 32 1 3.1665 1.3335 3.2217 33 1 1.5034 3.6694 5.5323 34 1 2.8000 -0.8365 2.3727 35 1 4.9810 -4.5310 2.3858 36 1 6.7921 -3.4541 1.1187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490068830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:21 Heat of formation + Delta-G solvation = -10.524872 kcal Electronic energy + Delta-G solvation = -25118.715641 eV Core-core repulsion = 21335.426647 eV Total energy + Delta-G solvation = -3783.288994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81099 -38.31389 -38.27123 -37.96725 -37.42510 -36.89861 -35.01115 -33.59560 -32.82409 -32.48687 -29.35748 -26.63997 -25.33386 -24.75836 -24.20516 -21.49979 -20.60727 -19.58985 -18.69926 -18.40500 -18.15716 -17.44346 -17.34195 -16.97272 -16.42851 -15.97646 -15.53522 -15.42168 -15.09310 -14.74069 -14.60506 -14.46348 -14.27131 -14.18416 -13.84132 -13.76609 -13.39010 -13.16901 -13.12515 -13.08467 -12.96506 -12.73619 -12.57284 -12.48362 -12.36243 -12.30473 -11.97423 -11.79830 -11.67532 -10.74706 -10.57402 -10.31084 -10.15376 -9.92052 -8.19142 -6.29749 -0.84798 -0.70734 -0.37653 0.59788 1.32798 1.42068 1.43868 1.45146 1.46528 1.51961 1.96887 2.42604 2.43115 2.53322 2.63091 3.13315 3.35264 3.55931 3.69028 3.79477 3.93386 4.02730 4.14881 4.31430 4.37299 4.49116 4.65976 4.78957 4.84085 4.94945 5.07085 5.17202 5.26165 5.39304 5.63855 5.72813 5.79094 5.97707 6.10523 6.24608 6.77580 7.38988 8.88452 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.010662 B = 0.005022 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.400961 B = 5574.339055 C = 6433.156060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.190 4.190 3 C 0.138 3.862 4 N -0.981 5.981 5 C 0.268 3.732 6 C -0.546 4.546 7 H 0.056 0.944 8 C 0.015 3.985 9 N -0.923 5.923 10 Si 0.951 3.049 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.277 1.277 14 S 2.681 3.319 15 O -0.964 6.964 16 O -0.975 6.975 17 C -0.677 4.677 18 C 0.023 3.977 19 C -0.040 4.040 20 C 0.275 3.725 21 N -0.437 5.437 22 C 0.015 3.985 23 C -0.108 4.108 24 C 0.061 3.939 25 Cl -0.046 7.046 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.036 0.964 32 H 0.020 0.980 33 H 0.267 0.733 34 H 0.145 0.855 35 H 0.200 0.800 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 -15.660 -9.413 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.210 4.210 3 C 0.014 3.986 4 N -0.820 5.820 5 C 0.145 3.855 6 C -0.586 4.586 7 H 0.075 0.925 8 C -0.184 4.184 9 N -0.563 5.563 10 Si 0.776 3.224 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.202 1.202 14 S 2.771 3.229 15 O -0.954 6.954 16 O -0.965 6.965 17 C -0.764 4.764 18 C 0.001 3.999 19 C -0.044 4.044 20 C -0.040 4.040 21 N -0.112 5.112 22 C -0.005 4.005 23 C -0.126 4.126 24 C 0.032 3.968 25 Cl -0.017 7.017 26 H 0.133 0.867 27 H 0.119 0.881 28 H 0.133 0.867 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.217 0.783 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.153 -15.812 -8.694 18.766 hybrid contribution 0.048 1.060 0.418 1.141 sum 5.201 -14.752 -8.276 17.697 Atomic orbital electron populations 1.24039 0.95441 1.02891 0.97801 1.23375 0.97042 0.98253 1.02337 1.20606 0.92967 0.96991 0.88060 1.57295 1.27654 1.78973 1.18077 1.18753 0.95620 0.94017 0.77082 1.21768 1.43627 0.93295 0.99873 0.92548 1.25672 0.94672 1.02942 0.95145 1.69989 1.44498 1.37361 1.04474 0.85706 0.78628 0.80310 0.77718 1.18769 1.20443 1.20235 1.02203 0.73016 0.74295 0.73411 1.93530 1.84215 1.86980 1.30661 1.93604 1.69343 1.69628 1.63973 1.30728 1.02589 1.27091 1.15988 1.20983 0.95831 0.93983 0.89096 1.16097 0.93164 0.92825 1.02345 1.25427 0.92734 0.93036 0.92852 1.81310 1.10263 1.09539 1.10098 1.21925 0.87758 1.01654 0.89131 1.21589 1.01886 0.90884 0.98272 1.20953 0.87878 0.94952 0.93040 1.98464 1.48733 1.81602 1.72864 0.86676 0.88123 0.86668 0.89243 0.88222 0.94554 0.96254 0.92431 0.83709 0.78287 0.78464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 14.32 67.78 0.97 -2.96 16 2 C -0.19 -5.12 9.84 25.64 0.25 -4.87 16 3 C 0.14 4.53 6.09 85.63 0.52 5.05 16 4 N -0.98 -38.82 1.98 -523.92 -1.04 -39.85 16 5 C 0.27 12.92 4.10 85.64 0.35 13.27 16 6 C -0.55 -29.90 9.38 25.60 0.24 -29.66 16 7 H 0.06 3.08 7.81 -2.91 -0.02 3.05 16 8 C 0.02 0.85 5.46 84.65 0.46 1.32 16 9 N -0.92 -53.08 13.29 21.45 0.28 -52.79 16 10 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 S 2.68 104.58 4.75 -56.49 -0.27 104.31 16 15 O -0.96 -37.14 15.22 -128.00 -1.95 -39.09 16 16 O -0.98 -46.65 17.18 -128.00 -2.20 -48.85 16 17 C -0.68 -20.16 5.83 22.25 0.13 -20.03 16 18 C 0.02 0.60 8.91 22.53 0.20 0.81 16 19 C -0.04 -0.80 5.73 -21.34 -0.12 -0.92 16 20 C 0.27 6.35 15.33 88.33 1.35 7.71 16 21 N -0.44 -12.18 18.54 19.01 0.35 -11.82 16 22 C 0.02 0.18 9.76 22.53 0.22 0.40 16 23 C -0.11 -1.47 9.81 22.25 0.22 -1.25 16 24 C 0.06 1.47 6.31 22.40 0.14 1.61 16 25 Cl -0.05 -1.20 26.83 -2.72 -0.07 -1.28 16 26 H 0.12 2.27 8.06 -2.91 -0.02 2.24 16 27 H 0.10 2.43 7.84 -2.91 -0.02 2.40 16 28 H 0.12 2.75 7.69 -2.91 -0.02 2.73 16 29 H 0.09 3.00 7.76 -2.39 -0.02 2.98 16 30 H 0.10 3.06 6.88 -2.38 -0.02 3.04 16 31 H 0.04 1.77 8.11 -2.39 -0.02 1.75 16 32 H 0.02 1.00 7.71 -2.39 -0.02 0.98 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.15 4.26 6.41 -2.91 -0.02 4.24 16 35 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -72.17 352.21 3.20 -68.97 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.12 Total: 4.07 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 4.94 Total: -29.53 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -0.40 Total: -104.47 kcal Atomic # 8 Polarization: -83.79 SS G_CDS: -4.15 Total: -87.94 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 104.58 SS G_CDS: -0.27 Total: 104.31 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.07 Total: -1.28 kcal Total: -72.17 3.20 -68.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490068830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.442 kcal (2) G-P(sol) polarization free energy of solvation -72.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds