Wall clock time and date at job start Sat Apr 11 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99607 * 2 1 4 4 N 1.46493 * 109.47160 * 124.99396 * 3 2 1 5 5 C 1.46491 * 120.00481 * 274.99973 * 4 3 2 6 6 C 1.50707 * 109.47262 * 275.00276 * 5 4 3 7 7 H 1.08002 * 119.99447 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00134 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00171 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00071 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47128 * 89.99726 * 10 8 6 12 12 H 1.48505 * 109.47121 * 209.99565 * 10 8 6 13 13 H 1.48505 * 109.46988 * 329.99616 * 10 8 6 14 14 S 1.65608 * 119.99606 * 95.00116 * 4 3 2 15 15 O 1.42094 * 106.40113 * 336.45837 * 14 4 3 16 16 O 1.42106 * 106.39830 * 203.54047 * 14 4 3 17 17 C 1.76200 * 107.21905 * 89.99952 * 14 4 3 18 18 C 1.38415 * 119.83489 * 270.02416 * 17 14 4 19 19 C 1.37900 * 120.18471 * 179.72006 * 18 17 14 20 20 C 1.39675 * 119.85414 * 0.50997 * 19 18 17 21 21 C 1.43205 * 120.15596 * 179.76880 * 20 19 18 22 22 N 9.66329 * 135.62342 * 352.65311 * 2 1 3 23 23 C 1.39734 * 119.68351 * 359.48836 * 20 19 18 24 24 Cl 1.73606 * 120.09651 * 180.27796 * 23 20 19 25 25 C 1.38139 * 119.81222 * 0.25654 * 23 20 19 26 26 H 1.07994 * 120.00349 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99547 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00349 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.46613 * 4.99633 * 3 2 1 30 30 H 1.09002 * 109.46623 * 244.99969 * 3 2 1 31 31 H 1.09001 * 109.47355 * 34.99754 * 5 4 3 32 32 H 1.09000 * 109.47842 * 155.00156 * 5 4 3 33 33 H 0.96995 * 120.00041 * 180.02562 * 9 8 6 34 34 H 1.08000 * 119.91031 * 359.97143 * 18 17 14 35 35 H 1.07999 * 120.07099 * 180.25020 * 19 18 17 36 36 H 1.07996 * 119.93437 * 179.97438 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5283 1.7623 2.4522 6 6 2.5988 3.2649 2.5448 7 1 2.9550 3.8416 1.7040 8 6 2.2095 3.9032 3.7032 9 7 1.7761 3.2009 4.7273 10 14 2.2976 5.7656 3.8183 11 1 1.0128 6.3512 3.3583 12 1 2.5466 6.1632 5.2273 13 1 3.4034 6.2627 2.9608 14 16 4.5712 0.8762 0.9174 15 8 4.5923 0.0265 -0.2213 16 8 5.0502 0.4767 2.1943 17 6 5.4767 2.3220 0.4762 18 6 5.6102 2.6709 -0.8565 19 6 6.3124 3.8040 -1.2096 20 6 6.8991 4.5952 -0.2193 21 6 7.6340 5.7705 -0.5789 22 7 8.2169 6.7027 -0.8642 23 6 6.7607 4.2375 1.1244 24 17 7.4795 5.2170 2.3645 25 6 6.0499 3.1025 1.4633 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5399 -0.9354 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3584 2.1317 0.0895 30 1 2.6212 1.4027 -0.9314 31 1 1.4981 1.4374 2.5982 32 1 3.1610 1.3208 3.2221 33 1 1.5019 3.6500 5.5421 34 1 5.1597 2.0564 -1.6219 35 1 6.4119 4.0768 -2.2498 36 1 5.9420 2.8241 2.5011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490111851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:34 Heat of formation + Delta-G solvation = 2.326597 kcal Electronic energy + Delta-G solvation = -24931.791565 eV Core-core repulsion = 21149.059853 eV Total energy + Delta-G solvation = -3782.731712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.70308 -36.97120 -36.67973 -36.65499 -36.47929 -35.47375 -33.30217 -32.00750 -31.86647 -31.14291 -27.60797 -25.05902 -24.72000 -23.15466 -22.40170 -19.79235 -19.37043 -18.93834 -17.46464 -16.98646 -16.51147 -16.34453 -15.61526 -15.28075 -14.62634 -14.56948 -14.51794 -14.39896 -14.03755 -13.72517 -13.18549 -13.09185 -13.00954 -12.77364 -12.56016 -12.30044 -11.93253 -11.83969 -11.80802 -11.62876 -11.39479 -11.34287 -11.26597 -10.99335 -10.85809 -10.71614 -10.59423 -10.17953 -9.91553 -9.53359 -9.14335 -9.04376 -8.57428 -8.25449 -6.19590 -4.27168 0.03319 0.77929 0.93266 1.83743 2.36756 2.45809 2.57820 3.20403 3.29317 3.29908 3.34176 3.44919 3.57515 4.09461 4.30219 4.34269 4.68050 4.79588 5.02564 5.14040 5.17133 5.21988 5.36179 5.43301 5.56703 5.59091 5.73093 5.87619 6.03575 6.20304 6.32227 6.34061 6.90263 6.97003 7.15191 7.23396 7.30090 7.47699 7.76166 8.03225 8.77596 9.40444 10.88203 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.009356 B = 0.005877 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.061437 B = 4763.526314 C = 6545.865705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.155 3.845 4 N -0.972 5.972 5 C 0.242 3.758 6 C -0.546 4.546 7 H 0.062 0.938 8 C 0.071 3.929 9 N -0.885 5.885 10 Si 0.884 3.116 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.270 1.270 14 S 2.685 3.315 15 O -0.967 6.967 16 O -0.946 6.946 17 C -0.631 4.631 18 C -0.022 4.022 19 C -0.086 4.086 20 C 0.024 3.976 21 C 0.251 3.749 22 N -0.394 5.394 23 C -0.017 4.017 24 Cl -0.045 7.045 25 C 0.013 3.987 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.266 0.734 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.455 -2.399 -10.519 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.183 4.183 3 C 0.029 3.971 4 N -0.811 5.811 5 C 0.121 3.879 6 C -0.586 4.586 7 H 0.081 0.919 8 C -0.133 4.133 9 N -0.523 5.523 10 Si 0.711 3.289 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.195 1.195 14 S 2.771 3.229 15 O -0.957 6.957 16 O -0.937 6.937 17 C -0.715 4.715 18 C -0.042 4.042 19 C -0.107 4.107 20 C 0.020 3.980 21 C -0.065 4.065 22 N -0.068 5.068 23 C -0.047 4.047 24 Cl -0.015 7.015 25 C -0.007 4.007 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.734 -1.622 -10.543 12.110 hybrid contribution -0.161 1.740 0.352 1.782 sum 5.573 0.117 -10.190 11.615 Atomic orbital electron populations 1.23799 0.95819 1.01676 1.00890 1.23409 0.96334 0.99176 0.99392 1.20266 0.93161 0.95873 0.87803 1.57411 1.23167 1.82443 1.18091 1.19341 0.97495 0.94971 0.76119 1.21509 1.45399 0.91800 0.99846 0.91947 1.24879 0.94767 0.98174 0.95483 1.69918 1.42599 1.35631 1.04127 0.86708 0.78703 0.85732 0.77724 1.20530 1.20949 1.19484 1.02354 0.73247 0.73822 0.73450 1.93544 1.86929 1.62612 1.52588 1.93588 1.79985 1.79980 1.40103 1.31748 1.15200 1.24200 1.00335 1.20948 0.93878 0.94709 0.94616 1.21220 0.96621 0.93980 0.98871 1.16029 0.98677 0.91009 0.92325 1.25382 0.93948 0.93071 0.94087 1.81214 1.08441 1.09841 1.07348 1.21006 1.00309 0.95065 0.88325 1.98413 1.81477 1.69179 1.52464 1.20890 0.89183 0.89474 1.01156 0.88348 0.88819 0.87374 0.89172 0.90597 0.93576 0.92685 0.92446 0.82732 0.83322 0.81546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 14.32 29.01 0.42 -1.94 16 2 C -0.16 -2.32 9.84 -36.02 -0.35 -2.68 16 3 C 0.15 2.30 5.78 -5.19 -0.03 2.27 16 4 N -0.97 -17.37 2.75 -116.95 -0.32 -17.69 16 5 C 0.24 5.38 5.43 -5.19 -0.03 5.35 16 6 C -0.55 -13.04 9.38 -34.44 -0.32 -13.37 16 7 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -23.88 13.29 55.43 0.74 -23.15 16 10 Si 0.88 19.93 29.54 -169.99 -5.02 14.91 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 S 2.68 45.61 5.64 -107.50 -0.61 45.01 16 15 O -0.97 -16.14 16.24 -57.17 -0.93 -17.07 16 16 O -0.95 -18.98 15.82 -57.17 -0.90 -19.89 16 17 C -0.63 -9.34 5.98 -39.50 -0.24 -9.58 16 18 C -0.02 -0.26 9.50 -39.64 -0.38 -0.64 16 19 C -0.09 -0.90 9.76 -39.17 -0.38 -1.28 16 20 C 0.02 0.31 5.74 -106.87 -0.61 -0.31 16 21 C 0.25 3.36 14.39 -22.47 -0.32 3.04 16 22 N -0.39 -5.80 18.54 41.83 0.78 -5.03 16 23 C -0.02 -0.25 6.35 -39.06 -0.25 -0.49 16 24 Cl -0.04 -0.66 28.03 -51.86 -1.45 -2.11 16 25 C 0.01 0.20 9.29 -39.60 -0.37 -0.17 16 26 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 27 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.09 1.35 7.76 -51.93 -0.40 0.94 16 30 H 0.08 0.92 7.61 -51.93 -0.40 0.53 16 31 H 0.05 1.09 8.11 -51.93 -0.42 0.66 16 32 H 0.06 1.34 6.91 -51.93 -0.36 0.98 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.16 1.40 7.60 -52.49 -0.40 1.00 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.17 2.73 7.60 -52.49 -0.40 2.33 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -29.18 356.10 -8.92 -38.10 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.60 Total: -0.38 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.96 Total: -18.07 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 1.19 Total: -45.87 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.83 Total: -36.96 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 45.61 SS G_CDS: -0.61 Total: 45.01 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.45 Total: -2.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.18 -8.92 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490111851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.427 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds