Wall clock time and date at job start Sat Apr 11 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99743 * 2 1 4 4 N 1.46500 * 109.47453 * 124.49211 * 3 2 1 5 5 C 1.46506 * 119.99743 * 85.23821 * 4 3 2 6 6 C 1.50699 * 109.46522 * 85.00383 * 5 4 3 7 7 H 1.07999 * 120.00618 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99654 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99595 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99911 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47246 * 60.00172 * 10 8 6 12 12 H 1.48504 * 109.46821 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47550 * 299.99634 * 10 8 6 14 14 S 1.65593 * 120.00126 * 265.24103 * 4 3 2 15 15 O 1.42108 * 106.40117 * 27.20969 * 14 4 3 16 16 O 1.42102 * 106.40213 * 160.12403 * 14 4 3 17 17 C 1.76200 * 107.21924 * 273.66958 * 14 4 3 18 18 C 1.37972 * 120.06532 * 106.29175 * 17 14 4 19 19 C 1.38315 * 120.16367 * 179.77106 * 18 17 14 20 20 C 1.38503 * 120.29426 * 0.50208 * 19 18 17 21 21 Cl 1.73599 * 119.93639 * 179.77188 * 20 19 18 22 22 C 1.38042 * 120.11935 * 359.75003 * 20 19 18 23 23 C 1.39611 * 120.05851 * 286.56391 * 17 14 4 24 24 C 1.43194 * 120.14853 * 359.97438 * 23 17 14 25 25 N 6.11303 * 141.89051 * 48.35557 * 2 1 3 26 26 H 1.08005 * 119.99960 * 5.06803 * 1 2 3 27 27 H 1.07998 * 119.99976 * 185.05453 * 1 2 3 28 28 H 1.07995 * 120.00314 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47415 * 4.48675 * 3 2 1 30 30 H 1.09004 * 109.46580 * 244.49550 * 3 2 1 31 31 H 1.08992 * 109.46948 * 205.00075 * 5 4 3 32 32 H 1.09000 * 109.47099 * 325.00652 * 5 4 3 33 33 H 0.97007 * 119.99853 * 180.02562 * 9 8 6 34 34 H 1.07998 * 119.91785 * 0.02562 * 18 17 14 35 35 H 1.08004 * 119.85449 * 180.22760 * 19 18 17 36 36 H 1.08000 * 120.07807 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9851 1.3371 1.1384 5 6 4.3160 0.7361 1.0205 6 6 5.2653 1.7341 0.4091 7 1 4.9127 2.7178 0.1362 8 6 6.5843 1.3917 0.1992 9 7 7.0137 0.1941 0.5321 10 14 7.7613 2.6290 -0.5579 11 1 7.8367 3.8338 0.3069 12 1 9.1106 2.0202 -0.6764 13 1 7.2726 3.0167 -1.9055 14 16 2.5224 2.0524 2.5584 15 8 1.1060 1.9531 2.6149 16 8 3.3787 1.5334 3.5667 17 6 2.8958 3.7691 2.4235 18 6 1.8802 4.6853 2.2428 19 6 2.1706 6.0338 2.1415 20 6 3.4823 6.4731 2.2100 21 17 3.8367 8.1673 2.0758 22 6 4.5082 5.5663 2.3854 23 6 4.2206 4.2042 2.4936 24 6 5.2797 3.2579 2.6757 25 7 6.1200 2.5070 2.8193 26 1 -0.5400 0.9317 -0.0826 27 1 -0.5400 -0.9317 0.0824 28 1 1.8501 -0.9352 0.0004 29 1 1.3579 2.1321 0.0804 30 1 2.6283 1.3985 -0.9276 31 1 4.6751 0.4517 2.0094 32 1 4.2603 -0.1483 0.3858 33 1 7.9418 -0.0467 0.3848 34 1 0.8555 4.3491 2.1845 35 1 1.3713 6.7470 2.0038 36 1 5.5308 5.9097 2.4392 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490124749.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:37 Heat of formation + Delta-G solvation = 14.579028 kcal Electronic energy + Delta-G solvation = -25676.182928 eV Core-core repulsion = 21893.982521 eV Total energy + Delta-G solvation = -3782.200407 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.54524 -37.03485 -36.81773 -36.51346 -35.41864 -35.38170 -33.23355 -31.95900 -31.44809 -31.21194 -27.45864 -25.04828 -24.21669 -23.35715 -22.44129 -19.59678 -19.48937 -18.36191 -17.31862 -16.90423 -16.45703 -16.19502 -15.58216 -15.35412 -14.57537 -14.47980 -14.40407 -14.01625 -13.71384 -13.42791 -13.10382 -12.75483 -12.56322 -12.46255 -12.29265 -12.09805 -11.78366 -11.68947 -11.61294 -11.52850 -11.29094 -11.24901 -11.17204 -10.97618 -10.81473 -10.66224 -10.48715 -10.13190 -9.86224 -9.29714 -9.09281 -9.01445 -8.46503 -8.20138 -6.13560 -4.17624 0.34786 0.83296 0.89865 1.75174 2.55540 2.93660 3.21034 3.27205 3.28671 3.45301 3.55053 4.07068 4.12186 4.30358 4.35500 4.48648 4.68148 4.93319 5.20479 5.22487 5.26529 5.27021 5.38581 5.56769 5.65551 5.70215 5.84016 5.91007 6.03451 6.20794 6.33507 6.39907 6.91576 7.10437 7.22329 7.33527 7.52974 7.79919 8.08191 8.31995 8.80656 9.46249 10.94845 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.008795 B = 0.006824 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.988049 B = 4102.223642 C = 6134.263225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 C 0.157 3.843 4 N -0.973 5.973 5 C 0.242 3.758 6 C -0.554 4.554 7 H 0.058 0.942 8 C 0.086 3.914 9 N -0.873 5.873 10 Si 0.878 3.122 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.276 1.276 14 S 2.680 3.320 15 O -0.965 6.965 16 O -0.943 6.943 17 C -0.644 4.644 18 C -0.011 4.011 19 C -0.122 4.122 20 C 0.012 3.988 21 Cl -0.058 7.058 22 C -0.101 4.101 23 C 0.138 3.862 24 C 0.178 3.822 25 N -0.281 5.281 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.230 11.102 0.614 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.184 4.184 3 C 0.032 3.968 4 N -0.813 5.813 5 C 0.121 3.879 6 C -0.593 4.593 7 H 0.077 0.923 8 C -0.119 4.119 9 N -0.510 5.510 10 Si 0.705 3.295 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.202 1.202 14 S 2.767 3.233 15 O -0.955 6.955 16 O -0.933 6.933 17 C -0.729 4.729 18 C -0.030 4.030 19 C -0.142 4.142 20 C -0.015 4.015 21 Cl -0.029 7.029 22 C -0.122 4.122 23 C 0.133 3.867 24 C -0.139 4.139 25 N 0.044 4.956 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.175 0.825 35 H 0.163 0.837 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.041 9.578 1.551 13.963 hybrid contribution 0.805 1.802 -1.097 2.258 sum -9.236 11.380 0.454 14.663 Atomic orbital electron populations 1.23752 0.95777 1.01605 1.01143 1.23415 0.96018 0.99702 0.99242 1.20182 0.90999 0.94490 0.91173 1.57431 1.25820 1.69733 1.28268 1.19365 0.74908 0.94045 0.99588 1.21392 0.94358 1.00158 1.43401 0.92344 1.24714 0.97635 0.94901 0.94662 1.69872 1.16508 1.18968 1.45622 0.86877 0.80795 0.82002 0.79828 1.20075 1.20988 1.20162 1.02461 0.73341 0.73364 0.74116 1.93534 1.29209 1.86044 1.86705 1.93613 1.67451 1.76753 1.55507 1.31672 0.98676 1.28426 1.14158 1.20872 0.99017 0.91572 0.91581 1.21265 0.94906 0.96481 1.01580 1.20958 0.94655 0.85440 1.00436 1.98392 1.95270 1.13190 1.96042 1.21155 0.99879 0.90796 1.00405 1.15206 0.87700 0.90039 0.93756 1.24798 0.95272 0.95220 0.98564 1.81193 1.08640 1.03561 1.02159 0.88583 0.88795 0.87057 0.91144 0.88942 0.92627 0.93848 0.92513 0.82516 0.83675 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 14.31 29.01 0.42 -2.03 16 2 C -0.16 -2.50 9.84 -36.03 -0.35 -2.85 16 3 C 0.16 2.54 5.77 -5.19 -0.03 2.51 16 4 N -0.97 -18.99 2.75 -116.94 -0.32 -19.31 16 5 C 0.24 5.76 4.84 -5.19 -0.03 5.73 16 6 C -0.55 -13.83 5.66 -34.44 -0.19 -14.02 16 7 H 0.06 1.41 7.44 -52.49 -0.39 1.02 16 8 C 0.09 2.29 4.45 -17.82 -0.08 2.21 16 9 N -0.87 -24.54 13.29 55.43 0.74 -23.80 16 10 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 S 2.68 50.62 5.16 -107.50 -0.56 50.07 16 15 O -0.96 -17.58 16.11 -57.17 -0.92 -18.50 16 16 O -0.94 -21.13 14.70 -57.17 -0.84 -21.97 16 17 C -0.64 -10.43 5.97 -39.17 -0.23 -10.67 16 18 C -0.01 -0.14 9.53 -39.65 -0.38 -0.52 16 19 C -0.12 -1.31 9.82 -39.46 -0.39 -1.70 16 20 C 0.01 0.15 6.31 -39.56 -0.25 -0.10 16 21 Cl -0.06 -0.60 28.95 -51.86 -1.50 -2.10 16 22 C -0.10 -1.42 9.54 -39.13 -0.37 -1.80 16 23 C 0.14 2.38 5.66 -106.94 -0.61 1.78 16 24 C 0.18 3.80 9.77 -22.48 -0.22 3.58 16 25 N -0.28 -6.82 15.59 41.84 0.65 -6.16 16 26 H 0.10 1.15 7.86 -52.48 -0.41 0.74 16 27 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.07 0.96 7.38 -51.93 -0.38 0.58 16 30 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 31 H 0.06 1.49 6.51 -51.93 -0.34 1.15 16 32 H 0.04 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.16 1.61 7.36 -52.49 -0.39 1.22 16 35 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -30.79 342.19 -8.91 -39.70 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -3.58 Total: -1.03 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.72 Total: -17.87 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 1.07 Total: -49.28 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.76 Total: -40.46 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 50.62 SS G_CDS: -0.56 Total: 50.07 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.79 -8.91 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490124749.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.281 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds