Wall clock time and date at job start Sat Apr 11 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99697 * 2 1 4 4 H 1.48499 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47167 * 299.99920 * 3 2 1 6 6 H 1.48501 * 109.47214 * 60.00347 * 3 2 1 7 7 C 1.40025 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99841 * 192.77768 * 7 2 1 9 9 C 1.41556 * 120.00053 * 12.77776 * 7 2 1 10 10 C 1.41182 * 120.99040 * 204.81873 * 9 7 2 11 11 C 1.36556 * 119.14395 * 179.97438 * 10 9 7 12 12 N 1.32100 * 121.27054 * 359.96864 * 11 10 9 13 13 C 1.32526 * 122.21450 * 0.02631 * 12 11 10 14 14 N 1.39079 * 119.65967 * 179.97438 * 13 12 11 15 15 S 1.65600 * 119.99593 * 5.87341 * 14 13 12 16 16 O 1.42104 * 106.40173 * 182.59057 * 15 14 13 17 17 O 1.42098 * 106.40395 * 49.66696 * 15 14 13 18 18 C 1.76198 * 107.21993 * 296.12664 * 15 14 13 19 19 C 1.38230 * 119.99219 * 115.50298 * 18 15 14 20 20 C 1.38185 * 120.05493 * 180.25928 * 19 18 15 21 21 C 1.38500 * 120.02015 * 359.44656 * 20 19 18 22 22 F 1.35101 * 120.00977 * 180.29993 * 21 20 19 23 23 C 1.38390 * 119.97651 * 0.27869 * 21 20 19 24 24 C 1.38447 * 119.95116 * 359.97438 * 23 21 20 25 25 F 1.35101 * 120.00955 * 179.97438 * 24 23 21 26 26 C 1.38751 * 120.68686 * 0.25348 * 13 12 11 27 27 H 0.96995 * 120.00310 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.43037 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.36957 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00327 * 185.86656 * 14 13 12 31 31 H 1.08006 * 119.96880 * 0.02562 * 19 18 15 32 32 H 1.07991 * 119.99001 * 179.72510 * 20 19 18 33 33 H 1.08002 * 120.02386 * 179.97438 * 23 21 20 34 34 H 1.07992 * 120.66368 * 179.74913 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 3.0676 -1.2242 0.2063 9 6 1.3262 -2.4233 -0.2722 10 6 1.8186 -3.6574 0.2049 11 6 1.1307 -4.8024 -0.0790 12 7 0.0169 -4.7750 -0.7888 13 6 -0.4917 -3.6465 -1.2621 14 7 -1.6676 -3.6793 -2.0039 15 16 -2.5026 -5.0998 -2.1695 16 8 -3.6057 -4.8200 -3.0205 17 8 -2.6465 -5.6356 -0.8613 18 6 -1.4636 -6.2157 -3.0526 19 6 -1.0078 -7.3676 -2.4394 20 6 -0.1885 -8.2410 -3.1289 21 6 0.1675 -7.9687 -4.4394 22 9 0.9636 -8.8258 -5.1154 23 6 -0.2929 -6.8186 -5.0563 24 6 -1.1094 -5.9417 -4.3627 25 9 -1.5590 -4.8183 -4.9636 26 6 0.1398 -2.4330 -1.0300 27 1 -0.4850 0.8400 -0.0004 28 1 2.7271 -3.6955 0.7876 29 1 1.5042 -5.7485 0.2838 30 1 -1.9988 -2.8703 -2.4242 31 1 -1.2892 -7.5833 -1.4191 32 1 0.1706 -9.1384 -2.6474 33 1 -0.0154 -6.6053 -6.0780 34 1 -0.2728 -1.5140 -1.4192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531653001.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:50 Heat of formation + Delta-G solvation = -122.731894 kcal Electronic energy + Delta-G solvation = -27008.421671 eV Core-core repulsion = 22668.470335 eV Total energy + Delta-G solvation = -4339.951336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.048 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.48104 -50.26405 -40.49436 -39.86679 -38.36743 -37.08402 -36.48921 -35.56348 -32.49737 -32.29561 -31.73685 -30.04578 -27.93675 -24.73599 -24.37835 -23.82220 -23.23505 -20.83514 -19.97697 -19.45388 -18.96566 -18.59018 -18.55032 -17.71736 -17.27347 -17.03113 -16.92361 -16.59562 -16.25671 -16.06368 -15.85727 -15.79950 -15.45313 -14.88682 -14.83884 -14.55083 -14.34761 -13.98715 -13.54533 -13.42204 -13.29798 -13.23125 -13.16262 -12.89023 -12.74394 -12.70180 -12.40096 -12.02862 -11.91920 -11.88199 -11.24970 -10.51142 -10.15943 -10.03289 -9.93076 -9.00835 -8.65486 -6.58345 -0.88288 -0.57960 -0.16148 0.89173 0.98865 1.41403 1.53837 1.55997 1.64912 2.02247 2.19004 2.49019 2.52416 2.78202 3.01367 3.20454 3.51516 3.56374 3.71775 3.74163 4.00388 4.29656 4.47189 4.54548 4.68838 4.79851 4.80774 4.87892 4.93592 5.10872 5.16661 5.29587 5.50404 5.56225 5.82754 5.96970 6.22266 6.56534 6.80631 6.83301 7.53473 8.25692 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.003842 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.258208 B = 7286.280633 C = 7782.967675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.037 3.963 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.479 4.479 8 H 0.087 0.913 9 C 0.117 3.883 10 C -0.295 4.295 11 C 0.136 3.864 12 N -0.604 5.604 13 C 0.354 3.646 14 N -1.029 6.029 15 S 2.713 3.287 16 O -0.977 6.977 17 O -0.954 6.954 18 C -0.712 4.712 19 C 0.053 3.947 20 C -0.171 4.171 21 C 0.183 3.817 22 F -0.119 7.119 23 C -0.212 4.212 24 C 0.203 3.797 25 F -0.125 7.125 26 C -0.260 4.260 27 H 0.291 0.709 28 H 0.119 0.881 29 H 0.168 0.832 30 H 0.435 0.565 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -10.685 -7.388 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.180 4.180 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.509 4.509 8 H 0.105 0.895 9 C 0.108 3.892 10 C -0.319 4.319 11 C -0.016 4.016 12 N -0.327 5.327 13 C 0.128 3.872 14 N -0.779 5.779 15 S 2.805 3.195 16 O -0.968 6.968 17 O -0.944 6.944 18 C -0.802 4.802 19 C 0.034 3.966 20 C -0.190 4.190 21 C 0.163 3.837 22 F -0.097 7.097 23 C -0.232 4.232 24 C 0.182 3.818 25 F -0.103 7.103 26 C -0.288 4.288 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.185 0.815 30 H 0.272 0.728 31 H 0.189 0.811 32 H 0.204 0.796 33 H 0.194 0.806 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.727 -11.650 -7.260 13.746 hybrid contribution 1.052 2.111 -0.568 2.426 sum 0.325 -9.539 -7.828 12.344 Atomic orbital electron populations 1.69810 1.09077 1.30880 1.34200 1.26837 0.95545 1.04721 0.90932 0.85080 0.79486 0.75867 0.78859 1.17833 1.19023 1.19224 1.19971 0.97073 0.91223 1.42671 0.89505 1.18061 0.90684 0.93671 0.86749 1.21816 1.05542 0.93840 1.10687 1.21811 0.88907 0.98211 0.92631 1.66725 1.17557 1.26714 1.21707 1.17747 0.86092 0.91486 0.91862 1.52984 1.34816 1.27973 1.62133 1.01161 0.72320 0.72545 0.73482 1.93587 1.49504 1.84659 1.69023 1.93545 1.85021 1.78463 1.37419 1.30603 1.26025 1.17543 1.06021 1.20881 0.88269 0.87770 0.99664 1.21625 1.01022 1.03520 0.92865 1.17552 0.88753 0.86899 0.90483 1.91581 1.70324 1.68017 1.79762 1.21212 1.02759 0.95336 1.03858 1.16844 0.92937 0.82847 0.89212 1.91596 1.86795 1.48718 1.83207 1.21660 1.02179 0.95933 1.09001 0.89781 0.86271 0.81476 0.72805 0.81097 0.79629 0.80585 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.78 10.77 21.84 0.24 -39.55 16 2 C 0.04 1.71 5.27 85.29 0.45 2.16 16 3 Si 0.99 35.36 29.58 68.60 2.03 37.39 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 5 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 6 H -0.27 -9.30 7.11 99.48 0.71 -8.60 16 7 C -0.48 -23.73 9.13 23.52 0.21 -23.51 16 8 H 0.09 4.09 7.88 -2.91 -0.02 4.06 16 9 C 0.12 5.87 5.61 -21.12 -0.12 5.75 16 10 C -0.30 -13.05 9.85 22.60 0.22 -12.82 16 11 C 0.14 5.46 11.10 84.26 0.94 6.40 16 12 N -0.60 -25.55 8.21 -194.47 -1.60 -27.15 16 13 C 0.35 15.87 7.30 132.91 0.97 16.84 16 14 N -1.03 -39.78 5.84 -55.56 -0.32 -40.11 16 15 S 2.71 98.29 5.01 -56.49 -0.28 98.01 16 16 O -0.98 -37.38 17.44 -128.00 -2.23 -39.61 16 17 O -0.95 -38.46 16.07 -128.00 -2.06 -40.52 16 18 C -0.71 -21.91 5.22 22.32 0.12 -21.79 16 19 C 0.05 1.35 9.49 22.26 0.21 1.57 16 20 C -0.17 -3.36 10.03 22.32 0.22 -3.13 16 21 C 0.18 3.81 7.30 22.37 0.16 3.98 16 22 F -0.12 -2.28 17.27 44.97 0.78 -1.51 16 23 C -0.21 -4.87 10.01 22.36 0.22 -4.64 16 24 C 0.20 5.87 7.21 22.37 0.16 6.03 16 25 F -0.12 -3.86 16.29 44.97 0.73 -3.13 16 26 C -0.26 -12.87 8.62 23.01 0.20 -12.67 16 27 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 28 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 29 H 0.17 5.23 8.06 -2.91 -0.02 5.21 16 30 H 0.43 15.08 8.82 -96.75 -0.85 14.22 16 31 H 0.17 4.07 7.33 -2.91 -0.02 4.05 16 32 H 0.19 2.28 8.06 -2.92 -0.02 2.26 16 33 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.12 6.15 6.13 -2.91 -0.02 6.13 16 Total: -1.00 -63.06 324.62 1.59 -61.46 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.34 Total: 30.56 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 3.97 Total: -35.86 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -1.69 Total: -106.80 kcal Atomic # 8 Polarization: -75.84 SS G_CDS: -4.29 Total: -80.13 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 1.51 Total: -4.63 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Atomic # 16 Polarization: 98.29 SS G_CDS: -0.28 Total: 98.01 kcal Total: -63.06 1.59 -61.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531653001.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.270 kcal (2) G-P(sol) polarization free energy of solvation -63.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds