Wall clock time and date at job start Sat Apr 11 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99967 * 2 1 4 4 H 1.48494 * 109.47160 * 271.45821 * 3 2 1 5 5 H 1.48500 * 109.46833 * 31.45674 * 3 2 1 6 6 H 1.48493 * 109.47009 * 151.45318 * 3 2 1 7 7 C 1.37877 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99724 * 359.03788 * 7 2 1 9 9 C 1.50698 * 119.99822 * 179.04486 * 7 2 1 10 10 C 1.53001 * 115.54839 * 87.69868 * 9 7 2 11 11 N 1.46499 * 109.47192 * 56.03505 * 10 9 7 12 12 C 1.34781 * 119.99701 * 185.06480 * 11 10 9 13 13 O 1.21585 * 119.99932 * 4.86621 * 12 11 10 14 14 C 1.47535 * 119.99804 * 184.59588 * 12 11 10 15 15 C 1.39711 * 120.18445 * 354.74606 * 14 12 11 16 16 C 1.37890 * 119.89597 * 179.97438 * 15 14 12 17 17 Cl 1.73594 * 119.86664 * 180.02562 * 16 15 14 18 18 C 1.38649 * 120.27403 * 0.02562 * 16 15 14 19 19 C 1.38053 * 120.37158 * 359.97438 * 18 16 15 20 20 N 1.48021 * 119.94732 * 179.97438 * 19 18 16 21 21 O 1.21806 * 120.00436 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00027 * 180.02562 * 20 19 18 23 23 C 1.38701 * 120.10429 * 359.74195 * 19 18 16 24 24 O 1.35673 * 120.13960 * 180.27648 * 23 19 18 25 25 C 1.53004 * 117.49700 * 233.36763 * 9 7 2 26 26 C 1.53003 * 117.49674 * 302.02823 * 9 7 2 27 27 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47116 * 296.03079 * 10 9 7 29 29 H 1.09004 * 109.46906 * 176.03758 * 10 9 7 30 30 H 0.96994 * 120.00170 * 5.06640 * 11 10 9 31 31 H 1.08001 * 120.05691 * 359.95521 * 15 14 12 32 32 H 1.07993 * 119.81295 * 179.97438 * 18 16 15 33 33 H 0.96706 * 113.99872 * 270.25870 * 24 23 19 34 34 H 1.08998 * 117.49585 * 215.00004 * 25 9 7 35 35 H 1.09000 * 117.49507 * 0.02562 * 25 9 7 36 36 H 1.08996 * 117.49712 * 359.97438 * 26 9 7 37 37 H 1.08994 * 117.49392 * 144.97559 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4658 2.0642 -1.3996 5 1 1.4623 2.6435 0.7306 6 1 3.5617 1.4315 0.6690 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1292 0.0148 9 6 3.5114 -1.1941 -0.0223 10 6 4.1911 -1.1278 1.3469 11 7 3.7175 -2.2349 2.1813 12 6 4.1038 -2.3207 3.4697 13 8 4.7725 -1.4339 3.9642 14 6 3.7101 -3.4880 4.2816 15 6 2.8473 -4.4519 3.7539 16 6 2.4837 -5.5408 4.5178 17 17 1.4122 -6.7383 3.8612 18 6 2.9704 -5.6832 5.8082 19 6 3.8235 -4.7374 6.3408 20 7 4.3371 -4.8985 7.7197 21 8 4.0065 -5.8646 8.3838 22 8 5.0894 -4.0645 8.1907 23 6 4.2041 -3.6391 5.5841 24 8 5.0470 -2.7122 6.1048 25 6 4.2021 -2.0125 -1.1151 26 6 4.2011 -0.4835 -1.1886 27 1 -0.4850 0.8401 0.0004 28 1 3.9479 -0.1804 1.8278 29 1 5.2711 -1.2043 1.2204 30 1 3.1259 -2.9060 1.8066 31 1 2.4655 -4.3443 2.7494 32 1 2.6804 -6.5387 6.4001 33 1 4.6002 -1.9917 6.5702 34 1 5.1408 -2.5036 -0.8586 35 1 3.5665 -2.5505 -1.8185 36 1 3.5649 -0.0163 -1.9403 37 1 5.1388 0.0315 -0.9804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567615642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:18 Heat of formation + Delta-G solvation = -27.112649 kcal Electronic energy + Delta-G solvation = -26845.577465 eV Core-core repulsion = 22618.816300 eV Total energy + Delta-G solvation = -4226.761165 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.49286 -40.77620 -38.88287 -37.89617 -37.14321 -36.82502 -36.45409 -33.91444 -32.50787 -32.26763 -30.67030 -27.19928 -26.82025 -25.59881 -24.00291 -22.94553 -21.88965 -20.85842 -19.80746 -19.23720 -18.90274 -18.68556 -17.78664 -17.34418 -16.96854 -16.45137 -16.13865 -15.65634 -15.22446 -15.18528 -14.65247 -14.27717 -13.91720 -13.58217 -13.38349 -13.02569 -12.95282 -12.64137 -12.30935 -11.93820 -11.89378 -11.76285 -11.56141 -11.31669 -11.29441 -11.12916 -10.90852 -10.64476 -10.35698 -10.16074 -9.96974 -9.72751 -9.38178 -9.34214 -8.84287 -8.74368 -8.53760 -6.30370 -4.36756 -0.60683 -0.02244 0.86684 0.92136 1.50309 2.24287 3.06281 3.18079 3.21320 3.29330 3.32161 3.38575 3.98469 4.11495 4.14168 4.26865 4.34005 4.67961 4.81445 4.87223 4.99088 5.11968 5.30447 5.41229 5.53106 5.84422 5.91687 6.03504 6.07116 6.28553 6.30381 6.56190 6.72111 6.84955 6.93599 7.10777 7.40684 7.52010 7.76018 8.23453 8.33069 8.67619 9.32464 10.80367 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.003430 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.627564 B = 8161.285611 C = 9172.958162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.083 3.917 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.496 4.496 8 H 0.078 0.922 9 C -0.019 4.019 10 C 0.154 3.846 11 N -0.688 5.688 12 C 0.553 3.447 13 O -0.525 6.525 14 C -0.142 4.142 15 C -0.010 4.010 16 C -0.056 4.056 17 Cl -0.028 7.028 18 C -0.016 4.016 19 C -0.079 4.079 20 N 0.034 4.966 21 O -0.167 6.167 22 O -0.129 6.129 23 C 0.242 3.758 24 O -0.448 6.448 25 C -0.179 4.179 26 C -0.191 4.191 27 H 0.267 0.733 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.404 0.596 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.414 0.586 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 -11.071 8.461 14.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.121 4.121 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.533 4.533 8 H 0.096 0.904 9 C -0.020 4.020 10 C 0.031 3.969 11 N -0.338 5.338 12 C 0.337 3.663 13 O -0.403 6.403 14 C -0.147 4.147 15 C -0.029 4.029 16 C -0.084 4.084 17 Cl 0.002 6.998 18 C -0.036 4.036 19 C -0.163 4.163 20 N 0.555 4.445 21 O -0.379 6.379 22 O -0.351 6.351 23 C 0.192 3.808 24 O -0.262 6.262 25 C -0.216 4.216 26 C -0.229 4.229 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.241 0.759 31 H 0.183 0.817 32 H 0.187 0.813 33 H 0.277 0.723 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.089 -10.683 7.829 14.188 hybrid contribution -0.339 0.736 0.170 0.828 sum 4.750 -9.946 7.999 13.619 Atomic orbital electron populations 1.69877 1.06391 1.27453 1.49048 1.24966 0.94574 0.99187 0.93381 0.86874 0.80730 0.83268 0.78532 1.20325 1.21993 1.18078 1.20132 0.85891 0.94509 1.52741 0.90368 1.19615 0.95432 1.01140 0.85830 1.21248 0.95677 0.88872 0.91096 1.45754 1.48997 1.29310 1.09697 1.17515 0.81337 0.85118 0.82359 1.90820 1.39127 1.39035 1.71302 1.20560 1.00714 0.98404 0.95004 1.21777 0.91296 0.89239 1.00626 1.20461 0.99584 0.94550 0.93802 1.98440 1.62215 1.54149 1.85037 1.20890 0.91158 0.97698 0.93890 1.21363 1.07485 1.02301 0.85171 1.43207 0.99281 1.00120 1.01852 1.94552 1.62519 1.22056 1.58769 1.94609 1.29987 1.37148 1.73333 1.18103 0.84950 0.88183 0.89562 1.84741 1.30756 1.36720 1.73952 1.22899 1.01047 0.93143 1.04518 1.22944 1.01451 0.94954 1.03527 0.92335 0.91079 0.93319 0.75941 0.81674 0.81270 0.72322 0.90814 0.89289 0.89044 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 13.96 55.43 0.77 -24.11 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 20.21 24.88 -169.99 -4.23 15.98 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -5.63 5.62 56.52 0.32 -5.31 16 7 C -0.50 -11.91 8.89 -34.44 -0.31 -12.22 16 8 H 0.08 2.01 8.06 -52.49 -0.42 1.59 16 9 C -0.02 -0.38 0.93 -155.66 -0.14 -0.52 16 10 C 0.15 2.90 5.34 -4.04 -0.02 2.88 16 11 N -0.69 -11.25 5.31 -61.35 -0.33 -11.58 16 12 C 0.55 8.82 7.75 -12.47 -0.10 8.72 16 13 O -0.52 -9.87 15.16 -16.52 -0.25 -10.12 16 14 C -0.14 -1.78 5.89 -104.85 -0.62 -2.40 16 15 C -0.01 -0.10 9.31 -39.16 -0.36 -0.47 16 16 C -0.06 -0.52 6.31 -39.56 -0.25 -0.77 16 17 Cl -0.03 -0.24 28.94 -51.86 -1.50 -1.74 16 18 C -0.02 -0.15 9.32 -39.50 -0.37 -0.52 16 19 C -0.08 -0.90 6.86 -79.84 -0.55 -1.44 16 20 N 0.03 0.44 4.45 34.01 0.15 0.59 16 21 O -0.17 -2.17 18.44 -29.46 -0.54 -2.71 16 22 O -0.13 -1.78 17.24 -36.50 -0.63 -2.41 16 23 C 0.24 2.99 6.69 -38.70 -0.26 2.73 16 24 O -0.45 -5.80 9.60 -49.72 -0.48 -6.28 16 25 C -0.18 -3.11 9.93 -26.69 -0.27 -3.37 16 26 C -0.19 -3.61 7.56 -26.69 -0.20 -3.81 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.07 1.50 6.51 -51.93 -0.34 1.16 16 29 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 30 H 0.40 5.95 6.23 -40.82 -0.25 5.70 16 31 H 0.17 1.52 6.42 -52.49 -0.34 1.19 16 32 H 0.17 1.27 7.59 -52.49 -0.40 0.88 16 33 H 0.41 3.97 9.06 45.56 0.41 4.38 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.09 1.83 7.16 -51.93 -0.37 1.46 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -29.79 339.93 -8.07 -37.86 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -2.62 Total: 8.55 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.54 Total: -9.15 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.60 Total: -35.09 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.90 Total: -21.52 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.23 Total: 15.98 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.50 Total: -1.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.79 -8.07 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567615642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.747 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds