Wall clock time and date at job start Sat Apr 11 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99967 * 2 1 4 4 H 1.48494 * 109.47160 * 271.45821 * 3 2 1 5 5 H 1.48500 * 109.46833 * 31.45674 * 3 2 1 6 6 H 1.48493 * 109.47009 * 151.45318 * 3 2 1 7 7 C 1.37877 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99724 * 359.03788 * 7 2 1 9 9 C 1.50698 * 119.99822 * 179.04486 * 7 2 1 10 10 C 1.53001 * 115.54839 * 87.69868 * 9 7 2 11 11 N 1.46499 * 109.47192 * 56.03505 * 10 9 7 12 12 C 1.34781 * 119.99701 * 185.06480 * 11 10 9 13 13 O 1.21585 * 119.99932 * 4.86621 * 12 11 10 14 14 C 1.47535 * 119.99804 * 184.59588 * 12 11 10 15 15 C 1.39711 * 120.18445 * 354.74606 * 14 12 11 16 16 C 1.37890 * 119.89597 * 179.97438 * 15 14 12 17 17 Cl 1.73594 * 119.86664 * 180.02562 * 16 15 14 18 18 C 1.38649 * 120.27403 * 0.02562 * 16 15 14 19 19 C 1.38053 * 120.37158 * 359.97438 * 18 16 15 20 20 N 1.48021 * 119.94732 * 179.97438 * 19 18 16 21 21 O 1.21806 * 120.00436 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00027 * 180.02562 * 20 19 18 23 23 C 1.38701 * 120.10429 * 359.74195 * 19 18 16 24 24 O 1.35673 * 120.13960 * 180.27648 * 23 19 18 25 25 C 1.53004 * 117.49700 * 233.36763 * 9 7 2 26 26 C 1.53003 * 117.49674 * 302.02823 * 9 7 2 27 27 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47116 * 296.03079 * 10 9 7 29 29 H 1.09004 * 109.46906 * 176.03758 * 10 9 7 30 30 H 0.96994 * 120.00170 * 5.06640 * 11 10 9 31 31 H 1.08001 * 120.05691 * 359.95521 * 15 14 12 32 32 H 1.07993 * 119.81295 * 179.97438 * 18 16 15 33 33 H 0.96706 * 113.99872 * 270.25870 * 24 23 19 34 34 H 1.08998 * 117.49585 * 215.00004 * 25 9 7 35 35 H 1.09000 * 117.49507 * 0.02562 * 25 9 7 36 36 H 1.08996 * 117.49712 * 359.97438 * 26 9 7 37 37 H 1.08994 * 117.49392 * 144.97559 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4658 2.0642 -1.3996 5 1 1.4623 2.6435 0.7306 6 1 3.5617 1.4315 0.6690 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1292 0.0148 9 6 3.5114 -1.1941 -0.0223 10 6 4.1911 -1.1278 1.3469 11 7 3.7175 -2.2349 2.1813 12 6 4.1038 -2.3207 3.4697 13 8 4.7725 -1.4339 3.9642 14 6 3.7101 -3.4880 4.2816 15 6 2.8473 -4.4519 3.7539 16 6 2.4837 -5.5408 4.5178 17 17 1.4122 -6.7383 3.8612 18 6 2.9704 -5.6832 5.8082 19 6 3.8235 -4.7374 6.3408 20 7 4.3371 -4.8985 7.7197 21 8 4.0065 -5.8646 8.3838 22 8 5.0894 -4.0645 8.1907 23 6 4.2041 -3.6391 5.5841 24 8 5.0470 -2.7122 6.1048 25 6 4.2021 -2.0125 -1.1151 26 6 4.2011 -0.4835 -1.1886 27 1 -0.4850 0.8401 0.0004 28 1 3.9479 -0.1804 1.8278 29 1 5.2711 -1.2043 1.2204 30 1 3.1259 -2.9060 1.8066 31 1 2.4655 -4.3443 2.7494 32 1 2.6804 -6.5387 6.4001 33 1 4.6002 -1.9917 6.5702 34 1 5.1408 -2.5036 -0.8586 35 1 3.5665 -2.5505 -1.8185 36 1 3.5649 -0.0163 -1.9403 37 1 5.1388 0.0315 -0.9804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567615642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:17 Heat of formation + Delta-G solvation = -45.331749 kcal Electronic energy + Delta-G solvation = -26846.367505 eV Core-core repulsion = 22618.816300 eV Total energy + Delta-G solvation = -4227.551204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.46408 -41.81902 -40.09771 -38.84597 -38.57685 -37.72975 -37.35765 -35.24455 -34.22365 -33.48349 -31.58750 -28.62666 -27.81678 -27.32604 -25.11257 -23.85713 -23.34585 -21.99251 -21.24254 -20.45645 -19.96584 -19.62555 -18.77363 -18.66839 -18.12526 -17.71172 -17.22179 -16.87903 -16.62196 -16.45161 -15.97857 -15.60007 -15.03485 -14.77219 -14.66221 -14.35558 -14.20986 -14.04654 -13.83881 -13.10095 -12.88325 -12.78935 -12.72377 -12.63557 -12.34140 -12.32553 -12.18953 -12.12695 -11.99265 -11.59374 -11.19962 -11.08673 -10.98177 -10.65713 -10.38889 -10.24083 -9.94372 -8.29831 -6.35964 -1.53166 -0.92773 -0.08881 -0.00114 0.70430 1.27507 1.33766 1.41320 1.48785 1.91791 2.09308 2.36189 2.42779 3.00361 3.07207 3.23792 3.24126 3.32319 3.43796 3.79785 4.02105 4.02430 4.23444 4.35929 4.38913 4.43876 4.52811 4.55243 4.80981 4.89053 5.09535 5.11020 5.25906 5.41188 5.50728 5.69957 6.26347 6.28274 6.38188 6.48375 6.73262 7.06925 7.35581 8.83898 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.003430 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.627564 B = 8161.285611 C = 9172.958162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.032 3.968 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.307 1.307 6 H -0.239 1.239 7 C -0.476 4.476 8 H 0.054 0.946 9 C -0.041 4.041 10 C 0.162 3.838 11 N -0.689 5.689 12 C 0.554 3.446 13 O -0.557 6.557 14 C -0.154 4.154 15 C 0.003 3.997 16 C -0.050 4.050 17 Cl -0.014 7.014 18 C 0.004 3.996 19 C -0.084 4.084 20 N 0.036 4.964 21 O -0.158 6.158 22 O -0.160 6.160 23 C 0.241 3.759 24 O -0.464 6.464 25 C -0.151 4.151 26 C -0.195 4.195 27 H 0.263 0.737 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.412 0.588 31 H 0.176 0.824 32 H 0.193 0.807 33 H 0.424 0.576 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 -12.725 8.302 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.167 4.167 3 Si 0.748 3.252 4 H -0.197 1.197 5 H -0.234 1.234 6 H -0.162 1.162 7 C -0.514 4.514 8 H 0.072 0.928 9 C -0.042 4.042 10 C 0.038 3.962 11 N -0.339 5.339 12 C 0.340 3.660 13 O -0.438 6.438 14 C -0.159 4.159 15 C -0.016 4.016 16 C -0.078 4.078 17 Cl 0.015 6.985 18 C -0.015 4.015 19 C -0.169 4.169 20 N 0.554 4.446 21 O -0.374 6.374 22 O -0.375 6.375 23 C 0.192 3.808 24 O -0.279 6.279 25 C -0.188 4.188 26 C -0.233 4.233 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.249 0.751 31 H 0.193 0.807 32 H 0.211 0.789 33 H 0.288 0.712 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.209 -12.313 7.669 15.779 hybrid contribution -0.739 1.073 0.207 1.319 sum 5.471 -11.240 7.876 14.775 Atomic orbital electron populations 1.69998 1.07941 1.27768 1.52284 1.25616 0.94957 1.02098 0.94006 0.86166 0.80321 0.80006 0.78694 1.19658 1.23446 1.16215 1.20334 0.88245 0.93024 1.49796 0.92825 1.19484 0.93196 1.04288 0.87253 1.20999 0.96454 0.88548 0.90156 1.45688 1.49319 1.28959 1.09904 1.17865 0.80428 0.85531 0.82128 1.90799 1.40591 1.40510 1.71862 1.20156 1.02627 0.98205 0.94905 1.21855 0.90009 0.88710 1.01032 1.20389 0.99463 0.94396 0.93577 1.98457 1.61690 1.53471 1.84863 1.21146 0.89266 0.97339 0.93779 1.21312 1.08364 1.02738 0.84438 1.43352 0.99053 0.99874 1.02281 1.94530 1.61937 1.21796 1.59102 1.94621 1.31225 1.37678 1.73970 1.18156 0.84768 0.88339 0.89578 1.84699 1.31653 1.37374 1.74219 1.22933 1.01582 0.92350 1.01972 1.23007 1.01867 0.96358 1.02066 0.92772 0.93725 0.91676 0.75090 0.80655 0.78949 0.71151 0.87718 0.89485 0.90505 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.84 13.96 21.45 0.30 -53.55 16 2 C 0.03 1.67 5.47 84.65 0.46 2.13 16 3 Si 0.92 41.62 24.88 68.60 1.71 43.32 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.31 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.24 -10.01 5.62 99.48 0.56 -9.45 16 7 C -0.48 -22.82 8.89 25.60 0.23 -22.59 16 8 H 0.05 2.78 8.06 -2.91 -0.02 2.76 16 9 C -0.04 -1.56 0.93 -52.93 -0.05 -1.61 16 10 C 0.16 5.83 5.34 86.38 0.46 6.30 16 11 N -0.69 -21.68 5.31 -466.27 -2.48 -24.16 16 12 C 0.55 17.26 7.75 86.69 0.67 17.93 16 13 O -0.56 -20.84 15.16 16.87 0.26 -20.59 16 14 C -0.15 -3.68 5.89 -20.01 -0.12 -3.80 16 15 C 0.00 0.06 9.31 22.54 0.21 0.27 16 16 C -0.05 -0.80 6.31 22.29 0.14 -0.66 16 17 Cl -0.01 -0.21 28.94 -2.72 -0.08 -0.28 16 18 C 0.00 0.07 9.32 22.32 0.21 0.28 16 19 C -0.08 -1.77 6.86 36.44 0.25 -1.52 16 20 N 0.04 0.88 4.45 -46.30 -0.21 0.67 16 21 O -0.16 -3.79 18.44 18.88 0.35 -3.45 16 22 O -0.16 -4.39 17.24 25.61 0.44 -3.95 16 23 C 0.24 5.73 6.69 22.84 0.15 5.89 16 24 O -0.46 -11.99 9.60 -60.26 -0.58 -12.57 16 25 C -0.15 -4.78 9.93 30.62 0.30 -4.47 16 26 C -0.20 -6.86 7.56 30.62 0.23 -6.63 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.04 1.84 6.51 -2.39 -0.02 1.82 16 29 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 30 H 0.41 11.56 6.23 -92.71 -0.58 10.98 16 31 H 0.18 2.87 6.42 -2.91 -0.02 2.85 16 32 H 0.19 2.19 7.59 -2.91 -0.02 2.17 16 33 H 0.42 8.34 9.06 -74.05 -0.67 7.67 16 34 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.08 2.94 7.16 -2.39 -0.02 2.92 16 37 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -64.51 339.93 2.64 -61.87 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.22 Total: 21.16 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 3.15 Total: -8.49 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -2.38 Total: -77.03 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: 0.47 Total: -40.55 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.71 Total: 43.32 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.08 Total: -0.28 kcal Total: -64.51 2.64 -61.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567615642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.534 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds