Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47125 * 2 1 4 4 C 1.52996 * 109.47139 * 119.99686 * 2 1 3 5 5 C 1.50702 * 109.47414 * 294.99971 * 4 2 1 6 6 O 1.21283 * 119.99756 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99781 * 179.97438 * 5 4 2 8 8 C 1.37098 * 119.99426 * 179.72608 * 7 5 4 9 9 H 1.08005 * 120.00268 * 322.54052 * 8 7 5 10 10 C 1.38952 * 120.00155 * 142.54909 * 8 7 5 11 11 N 1.31404 * 120.00424 * 157.44183 * 10 8 7 12 12 Si 1.86807 * 119.99482 * 337.43420 * 10 8 7 13 13 H 1.48498 * 109.47111 * 95.71044 * 12 10 8 14 14 H 1.48498 * 109.46985 * 215.71022 * 12 10 8 15 15 H 1.48499 * 109.47205 * 335.71409 * 12 10 8 16 16 C 1.46493 * 120.00327 * 0.02562 * 7 5 4 17 17 C 1.47200 * 109.47236 * 83.60320 * 16 7 5 18 18 N 5.27487 * 135.41721 * 107.92923 * 2 1 3 19 19 N 1.46494 * 109.46865 * 239.99985 * 2 1 3 20 20 C 1.35023 * 126.03799 * 324.99715 * 19 2 1 21 21 C 1.35365 * 107.73138 * 179.97438 * 20 19 2 22 22 Br 1.89101 * 126.04191 * 180.02562 * 21 20 19 23 23 C 1.39918 * 107.91191 * 0.02562 * 21 20 19 24 24 N 1.30851 * 108.20746 * 359.73620 * 23 21 20 25 25 H 1.08998 * 109.47647 * 59.99878 * 1 2 3 26 26 H 1.09006 * 109.47220 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47025 * 300.00167 * 1 2 3 28 28 H 1.08999 * 109.47030 * 174.99874 * 4 2 1 29 29 H 1.08999 * 109.47168 * 55.00193 * 4 2 1 30 30 H 0.97000 * 119.99716 * 179.97438 * 11 10 8 31 31 H 1.08995 * 109.47404 * 203.59830 * 16 7 5 32 32 H 1.08997 * 109.47075 * 323.60030 * 16 7 5 33 33 H 1.07994 * 126.12869 * 359.95705 * 20 19 2 34 34 H 1.07997 * 125.89709 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0572 2.4766 6 8 1.0109 1.0871 2.3633 7 7 1.9845 -0.3918 3.7002 8 6 1.6267 0.3192 4.8164 9 1 1.6430 1.3990 4.7971 10 6 1.2432 -0.3492 5.9726 11 7 1.3275 0.2521 7.1379 12 14 0.6074 -2.1028 5.8703 13 1 1.7207 -3.0492 6.1348 14 1 -0.4619 -2.3014 6.8813 15 1 0.0581 -2.3518 4.5133 16 6 2.7455 -1.6361 3.8370 17 6 4.1798 -1.3561 3.6603 18 7 5.2870 -1.1398 3.5228 19 7 2.0183 -0.6906 -1.1961 20 6 1.4398 -1.7565 -1.7897 21 6 2.1962 -2.0927 -2.8608 22 35 1.8566 -3.5145 -4.0605 23 6 3.2736 -1.2023 -2.9233 24 7 3.1649 -0.3584 -1.9292 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1263 -0.7994 1.2056 29 1 1.6054 -1.7197 1.2952 30 1 1.0594 -0.2145 7.9450 31 1 2.5772 -2.0578 4.8279 32 1 2.4181 -2.3475 3.0789 33 1 0.5360 -2.2520 -1.4675 34 1 4.0570 -1.2074 -3.6667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592595160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = 91.719132 kcal Electronic energy + Delta-G solvation = -21180.545860 eV Core-core repulsion = 17776.802693 eV Total energy + Delta-G solvation = -3403.743167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.47842 -39.45573 -36.61762 -35.52302 -34.65384 -32.39476 -31.88015 -30.52057 -28.75795 -28.20417 -27.89120 -24.98785 -23.21569 -21.11245 -20.41989 -19.23634 -18.61297 -17.49954 -16.83357 -16.09043 -15.81952 -15.22201 -15.05783 -14.63146 -14.03957 -13.77231 -13.69755 -13.48407 -13.25887 -12.94123 -12.78209 -12.63671 -12.60371 -12.04123 -11.75219 -11.62633 -11.52814 -11.28717 -11.09557 -11.00022 -10.96957 -10.63530 -10.23284 -10.16117 -9.68433 -9.42379 -8.92667 -8.55962 -8.22456 -6.63896 -4.26346 1.50950 1.62140 2.42212 2.45731 2.78988 2.88935 2.99128 3.02451 3.13505 3.32498 3.89626 4.12145 4.33274 4.40255 4.57664 4.70835 4.78689 4.83262 5.07865 5.15064 5.28547 5.34664 5.41074 5.49558 5.57094 5.67398 5.80289 5.90101 6.21338 6.29212 6.77259 7.19562 7.44831 7.84802 7.95567 8.14479 8.63244 8.98477 9.33285 10.47190 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.002990 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.425557 B = 9363.073011 C = 9397.954982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.175 3.825 3 H 0.116 0.884 4 C -0.158 4.158 5 C 0.480 3.520 6 O -0.544 6.544 7 N -0.456 5.456 8 C -0.328 4.328 9 H 0.111 0.889 10 C 0.065 3.935 11 N -0.848 5.848 12 Si 0.860 3.140 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.255 1.255 16 C 0.178 3.822 17 C 0.202 3.798 18 N -0.435 5.435 19 N -0.350 5.350 20 C 0.099 3.901 21 C -0.250 4.250 22 Br -0.030 7.030 23 C 0.072 3.928 24 N -0.282 5.282 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.278 0.722 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.182 0.818 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.507 -10.683 -18.753 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.075 3.925 3 H 0.134 0.866 4 C -0.199 4.199 5 C 0.268 3.732 6 O -0.424 6.424 7 N -0.178 5.178 8 C -0.455 4.455 9 H 0.129 0.871 10 C -0.143 4.143 11 N -0.482 5.482 12 Si 0.686 3.314 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.179 1.179 16 C 0.051 3.949 17 C -0.118 4.118 18 N -0.113 5.113 19 N -0.131 5.131 20 C -0.052 4.052 21 C -0.341 4.341 22 Br 0.053 6.947 23 C -0.116 4.116 24 N -0.102 5.102 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.199 0.801 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.887 -9.198 -18.476 20.658 hybrid contribution -0.888 -1.569 0.184 1.813 sum -1.775 -10.767 -18.292 21.300 Atomic orbital electron populations 1.22363 0.91686 1.03037 1.05506 1.21153 0.95619 0.97095 0.78680 0.86565 1.22155 1.03263 1.00793 0.93716 1.19830 0.82265 0.87513 0.83557 1.90574 1.41648 1.24711 1.85431 1.43580 1.46281 1.21594 1.06355 1.19063 1.46123 0.93245 0.87044 0.87103 1.25377 0.95542 0.98661 0.94720 1.69747 1.41625 1.38963 0.97899 0.87195 0.79970 0.84422 0.79855 1.19613 1.20392 1.17925 1.19594 0.79644 0.90630 1.05072 1.29995 0.95457 0.93518 0.92801 1.81106 1.13093 1.07791 1.09360 1.49156 1.18768 1.22993 1.22153 1.22392 0.98997 0.90568 0.93230 1.21732 1.04035 1.04834 1.03479 1.96585 1.95797 1.43157 1.59196 1.23829 0.97982 0.92378 0.97401 1.77551 1.02933 1.22898 1.06781 0.91866 0.92202 0.86869 0.89152 0.88847 0.91092 0.86579 0.87427 0.80130 0.79497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 8.58 37.16 0.32 -1.70 16 2 C 0.18 2.40 3.05 -67.94 -0.21 2.19 16 3 H 0.12 1.79 7.95 -51.93 -0.41 1.38 16 4 C -0.16 -2.29 4.11 -27.88 -0.11 -2.41 16 5 C 0.48 9.28 7.28 -10.98 -0.08 9.20 16 6 O -0.54 -12.07 13.83 5.56 0.08 -11.99 16 7 N -0.46 -9.44 2.15 -117.94 -0.25 -9.69 16 8 C -0.33 -8.23 9.35 -14.93 -0.14 -8.37 16 9 H 0.11 3.20 7.91 -52.48 -0.42 2.78 16 10 C 0.07 1.60 5.26 -17.47 -0.09 1.50 16 11 N -0.85 -22.39 13.96 55.50 0.77 -21.61 16 12 Si 0.86 17.09 25.07 -169.99 -4.26 12.83 16 13 H -0.27 -4.89 6.69 56.52 0.38 -4.51 16 14 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 15 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 16 C 0.18 3.02 4.27 -6.83 -0.03 2.99 16 17 C 0.20 3.69 14.98 -20.75 -0.31 3.38 16 18 N -0.43 -8.69 18.54 42.17 0.78 -7.90 16 19 N -0.35 -4.56 3.53 -54.84 -0.19 -4.76 16 20 C 0.10 1.09 10.56 -17.17 -0.18 0.91 16 21 C -0.25 -2.78 6.53 -39.98 -0.26 -3.04 16 22 Br -0.03 -0.29 34.08 -68.01 -2.32 -2.60 16 23 C 0.07 0.85 12.01 -17.34 -0.21 0.64 16 24 N -0.28 -4.02 12.57 30.64 0.39 -3.63 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.59 7.16 -51.93 -0.37 0.21 16 27 H 0.11 1.65 5.95 -51.93 -0.31 1.34 16 28 H 0.09 1.36 7.47 -51.93 -0.39 0.98 16 29 H 0.09 1.10 7.42 -51.93 -0.39 0.71 16 30 H 0.28 6.76 8.31 -40.82 -0.34 6.43 16 31 H 0.12 2.03 3.65 -51.93 -0.19 1.84 16 32 H 0.11 1.34 6.71 -51.93 -0.35 0.99 16 33 H 0.18 1.50 7.26 -52.49 -0.38 1.11 16 34 H 0.19 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -29.38 316.60 -4.75 -34.13 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -3.20 Total: 5.18 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.30 Total: 5.29 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 1.49 Total: -47.60 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -4.26 Total: 12.83 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.32 Total: -2.60 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.38 -4.75 -34.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592595160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.848 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds