Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47125 * 2 1 4 4 C 1.52996 * 109.47139 * 119.99686 * 2 1 3 5 5 C 1.50702 * 109.47414 * 294.99971 * 4 2 1 6 6 O 1.21283 * 119.99756 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99781 * 179.97438 * 5 4 2 8 8 C 1.37098 * 119.99426 * 179.72608 * 7 5 4 9 9 H 1.08005 * 120.00268 * 322.54052 * 8 7 5 10 10 C 1.38952 * 120.00155 * 142.54909 * 8 7 5 11 11 N 1.31404 * 120.00424 * 157.44183 * 10 8 7 12 12 Si 1.86807 * 119.99482 * 337.43420 * 10 8 7 13 13 H 1.48498 * 109.47111 * 95.71044 * 12 10 8 14 14 H 1.48498 * 109.46985 * 215.71022 * 12 10 8 15 15 H 1.48499 * 109.47205 * 335.71409 * 12 10 8 16 16 C 1.46493 * 120.00327 * 0.02562 * 7 5 4 17 17 C 1.47200 * 109.47236 * 83.60320 * 16 7 5 18 18 N 5.27487 * 135.41721 * 107.92923 * 2 1 3 19 19 N 1.46494 * 109.46865 * 239.99985 * 2 1 3 20 20 C 1.35023 * 126.03799 * 324.99715 * 19 2 1 21 21 C 1.35365 * 107.73138 * 179.97438 * 20 19 2 22 22 Br 1.89101 * 126.04191 * 180.02562 * 21 20 19 23 23 C 1.39918 * 107.91191 * 0.02562 * 21 20 19 24 24 N 1.30851 * 108.20746 * 359.73620 * 23 21 20 25 25 H 1.08998 * 109.47647 * 59.99878 * 1 2 3 26 26 H 1.09006 * 109.47220 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47025 * 300.00167 * 1 2 3 28 28 H 1.08999 * 109.47030 * 174.99874 * 4 2 1 29 29 H 1.08999 * 109.47168 * 55.00193 * 4 2 1 30 30 H 0.97000 * 119.99716 * 179.97438 * 11 10 8 31 31 H 1.08995 * 109.47404 * 203.59830 * 16 7 5 32 32 H 1.08997 * 109.47075 * 323.60030 * 16 7 5 33 33 H 1.07994 * 126.12869 * 359.95705 * 20 19 2 34 34 H 1.07997 * 125.89709 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0572 2.4766 6 8 1.0109 1.0871 2.3633 7 7 1.9845 -0.3918 3.7002 8 6 1.6267 0.3192 4.8164 9 1 1.6430 1.3990 4.7971 10 6 1.2432 -0.3492 5.9726 11 7 1.3275 0.2521 7.1379 12 14 0.6074 -2.1028 5.8703 13 1 1.7207 -3.0492 6.1348 14 1 -0.4619 -2.3014 6.8813 15 1 0.0581 -2.3518 4.5133 16 6 2.7455 -1.6361 3.8370 17 6 4.1798 -1.3561 3.6603 18 7 5.2870 -1.1398 3.5228 19 7 2.0183 -0.6906 -1.1961 20 6 1.4398 -1.7565 -1.7897 21 6 2.1962 -2.0927 -2.8608 22 35 1.8566 -3.5145 -4.0605 23 6 3.2736 -1.2023 -2.9233 24 7 3.1649 -0.3584 -1.9292 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1263 -0.7994 1.2056 29 1 1.6054 -1.7197 1.2952 30 1 1.0594 -0.2145 7.9450 31 1 2.5772 -2.0578 4.8279 32 1 2.4181 -2.3475 3.0789 33 1 0.5360 -2.2520 -1.4675 34 1 4.0570 -1.2074 -3.6667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592595160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = 72.667730 kcal Electronic energy + Delta-G solvation = -21181.371990 eV Core-core repulsion = 17776.802693 eV Total energy + Delta-G solvation = -3404.569298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.39654 -40.96397 -38.09928 -36.84999 -36.09324 -34.20299 -32.70879 -31.54926 -29.72278 -29.42308 -29.24000 -26.57382 -24.29252 -22.02456 -21.51134 -20.64696 -20.22351 -18.71178 -18.27721 -17.36175 -17.29660 -16.47623 -16.23351 -15.78693 -15.41332 -15.17986 -14.95906 -14.61715 -14.38491 -14.23346 -14.10436 -13.99180 -13.85804 -13.53488 -13.17608 -12.86788 -12.64221 -12.50308 -12.29473 -12.15260 -11.97038 -11.83152 -11.76407 -11.12239 -11.01079 -10.66178 -10.47622 -9.98723 -9.41861 -8.48898 -6.19102 0.67282 0.75680 1.27286 1.38527 1.41158 1.53936 1.54943 1.57139 1.68753 1.82683 2.23881 2.68506 2.82457 3.14579 3.42500 3.60484 3.71332 3.81894 3.94368 4.03282 4.13441 4.26650 4.36083 4.50339 4.55365 4.65253 4.81405 4.91377 5.28924 5.39043 5.45535 5.86924 6.04527 6.37231 6.45110 6.55667 6.86816 7.15985 7.67532 8.67414 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.002990 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.425557 B = 9363.073011 C = 9397.954982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 H 0.085 0.915 4 C -0.144 4.144 5 C 0.481 3.519 6 O -0.580 6.580 7 N -0.468 5.468 8 C -0.344 4.344 9 H 0.046 0.954 10 C 0.014 3.986 11 N -0.907 5.907 12 Si 0.929 3.071 13 H -0.232 1.232 14 H -0.289 1.289 15 H -0.222 1.222 16 C 0.176 3.824 17 C 0.217 3.783 18 N -0.469 5.469 19 N -0.358 5.358 20 C 0.106 3.894 21 C -0.258 4.258 22 Br -0.014 7.014 23 C 0.074 3.926 24 N -0.327 5.327 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.138 0.862 30 H 0.282 0.718 31 H 0.118 0.882 32 H 0.170 0.830 33 H 0.214 0.786 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -14.802 -20.831 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.080 3.920 3 H 0.103 0.897 4 C -0.185 4.185 5 C 0.271 3.729 6 O -0.462 6.462 7 N -0.191 5.191 8 C -0.471 4.471 9 H 0.064 0.936 10 C -0.189 4.189 11 N -0.543 5.543 12 Si 0.749 3.251 13 H -0.157 1.157 14 H -0.216 1.216 15 H -0.144 1.144 16 C 0.050 3.950 17 C -0.102 4.102 18 N -0.148 5.148 19 N -0.139 5.139 20 C -0.044 4.044 21 C -0.349 4.349 22 Br 0.069 6.931 23 C -0.113 4.113 24 N -0.147 5.147 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.156 0.844 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.187 0.813 33 H 0.230 0.770 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.737 -13.325 -20.594 24.590 hybrid contribution -0.584 -0.161 0.730 0.948 sum -2.321 -13.486 -19.864 24.121 Atomic orbital electron populations 1.22268 0.90287 1.04824 1.04472 1.20910 0.96551 0.95642 0.78928 0.89651 1.22092 1.03316 1.01980 0.91145 1.20674 0.80823 0.86948 0.84501 1.90568 1.42966 1.26508 1.86185 1.43581 1.47266 1.22753 1.05488 1.18572 1.48081 0.91170 0.89315 0.93648 1.26284 0.94718 1.04559 0.93384 1.69889 1.43335 1.41984 0.99057 0.86115 0.79893 0.77888 0.81208 1.15657 1.21591 1.14416 1.19996 0.78101 0.89577 1.07311 1.30281 0.95651 0.92539 0.91719 1.81125 1.14331 1.08656 1.10728 1.48975 1.19002 1.23803 1.22119 1.22928 0.99434 0.89448 0.92586 1.21906 1.03833 1.05224 1.03928 1.96610 1.95681 1.42163 1.58665 1.24264 0.98488 0.91676 0.96902 1.77531 1.04285 1.24618 1.08245 0.91064 0.88930 0.89723 0.89336 0.84395 0.90828 0.86449 0.81324 0.76991 0.77540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.58 71.98 0.62 -2.87 16 2 C 0.18 4.66 3.05 44.99 0.14 4.80 16 3 H 0.09 2.70 7.95 -2.39 -0.02 2.68 16 4 C -0.14 -3.78 4.11 29.85 0.12 -3.66 16 5 C 0.48 18.23 7.28 87.66 0.64 18.87 16 6 O -0.58 -26.64 13.83 -3.04 -0.04 -26.69 16 7 N -0.47 -18.99 2.15 -645.44 -1.39 -20.38 16 8 C -0.34 -17.92 9.35 84.04 0.79 -17.13 16 9 H 0.05 2.88 7.91 -2.91 -0.02 2.85 16 10 C 0.01 0.69 5.26 84.93 0.45 1.14 16 11 N -0.91 -49.89 13.96 21.66 0.30 -49.59 16 12 Si 0.93 33.22 25.07 68.60 1.72 34.94 16 13 H -0.23 -6.95 6.69 99.48 0.67 -6.29 16 14 H -0.29 -10.88 7.11 99.48 0.71 -10.17 16 15 H -0.22 -6.74 7.11 99.48 0.71 -6.04 16 16 C 0.18 5.36 4.27 84.58 0.36 5.72 16 17 C 0.22 7.52 14.98 89.44 1.34 8.86 16 18 N -0.47 -18.28 18.54 20.01 0.37 -17.91 16 19 N -0.36 -8.45 3.53 -327.42 -1.16 -9.61 16 20 C 0.11 1.92 10.56 83.54 0.88 2.80 16 21 C -0.26 -4.90 6.53 22.01 0.14 -4.76 16 22 Br -0.01 -0.22 34.08 -20.37 -0.69 -0.91 16 23 C 0.07 1.59 12.01 85.25 1.02 2.61 16 24 N -0.33 -8.85 12.57 -56.99 -0.72 -9.57 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.38 7.16 -2.38 -0.02 1.36 16 27 H 0.08 2.41 5.95 -2.39 -0.01 2.39 16 28 H 0.09 2.44 7.47 -2.39 -0.02 2.42 16 29 H 0.14 2.40 7.42 -2.39 -0.02 2.38 16 30 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.12 3.62 3.65 -2.39 -0.01 3.61 16 32 H 0.17 3.07 6.71 -2.39 -0.02 3.05 16 33 H 0.21 2.31 7.26 -2.91 -0.02 2.29 16 34 H 0.21 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -70.76 316.60 6.01 -64.76 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.11 Total: 18.58 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.50 Total: 16.37 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -2.59 Total: -107.05 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.04 Total: -26.69 kcal Atomic # 14 Polarization: 33.22 SS G_CDS: 1.72 Total: 34.94 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.91 kcal Total: -70.76 6.01 -64.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592595160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.425 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds