Wall clock time and date at job start Sat Apr 11 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48498 * 109.46993 * 264.83479 * 3 2 1 5 5 H 1.48494 * 109.47188 * 24.83523 * 3 2 1 6 6 H 1.48500 * 109.47320 * 144.83768 * 3 2 1 7 7 C 1.37874 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00434 * 3.38565 * 7 2 1 9 9 C 1.50704 * 119.99833 * 183.38586 * 7 2 1 10 10 O 1.42898 * 110.64210 * 61.91889 * 9 7 2 11 11 C 1.55153 * 110.87373 * 298.67062 * 9 7 2 12 12 C 1.55130 * 101.48724 * 205.89917 * 11 9 7 13 13 N 1.47429 * 104.72097 * 37.29567 * 12 11 9 14 14 C 1.34772 * 125.64519 * 155.82125 * 13 12 11 15 15 O 1.21526 * 119.99797 * 179.69302 * 14 13 12 16 16 C 1.48120 * 120.00385 * 359.68670 * 14 13 12 17 17 C 1.39341 * 119.71507 * 180.02562 * 16 14 13 18 18 C 1.38540 * 119.07328 * 180.02562 * 17 16 14 19 19 C 1.38730 * 118.48131 * 359.97438 * 18 17 16 20 20 Br 1.89100 * 120.33241 * 180.29952 * 19 18 17 21 21 C 1.38686 * 119.33403 * 0.02562 * 19 18 17 22 22 N 1.31492 * 120.88471 * 359.97438 * 21 19 18 23 23 C 1.47019 * 108.69845 * 335.55185 * 13 12 11 24 24 H 0.97000 * 119.99782 * 0.02562 * 1 2 3 25 25 H 0.96705 * 113.99962 * 61.68824 * 10 9 7 26 26 H 1.09004 * 111.00511 * 324.13732 * 11 9 7 27 27 H 1.08995 * 111.00452 * 87.94889 * 11 9 7 28 28 H 1.08995 * 110.49633 * 278.45361 * 12 11 9 29 29 H 1.09000 * 110.34112 * 156.06348 * 12 11 9 30 30 H 1.08001 * 120.45839 * 359.97438 * 17 16 14 31 31 H 1.08004 * 120.75466 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.55892 * 180.02562 * 21 19 18 33 33 H 1.09008 * 109.88084 * 120.70806 * 23 13 12 34 34 H 1.09001 * 109.88363 * 241.70890 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6058 1.9834 -1.3944 5 1 1.3963 2.6817 0.5880 6 1 3.4879 1.4742 0.8063 7 6 2.0045 -1.1940 -0.0005 8 1 1.4660 -2.1285 -0.0562 9 6 3.5096 -1.1952 0.0765 10 8 3.9519 -0.6017 1.2989 11 6 4.1262 -0.4623 -1.1440 12 6 5.5202 -1.1366 -1.2375 13 7 5.2774 -2.5486 -0.8898 14 6 6.0452 -3.5921 -1.2611 15 8 5.7512 -4.7179 -0.9105 16 6 7.2474 -3.3668 -2.0965 17 6 8.0367 -4.4502 -2.4773 18 6 9.1584 -4.2242 -3.2583 19 6 9.4524 -2.9211 -3.6326 20 35 10.9659 -2.5539 -4.7052 21 6 8.6220 -1.8911 -3.2170 22 7 7.5635 -2.1347 -2.4759 23 6 4.0625 -2.6289 -0.0657 24 1 -0.4850 0.8401 -0.0004 25 1 3.6571 -1.0694 2.0924 26 1 3.5401 -0.6427 -2.0452 27 1 4.2224 0.6061 -0.9506 28 1 6.2114 -0.6843 -0.5263 29 1 5.9122 -1.0575 -2.2514 30 1 7.7780 -5.4518 -2.1672 31 1 9.7891 -5.0440 -3.5694 32 1 8.8472 -0.8753 -3.5066 33 1 3.3240 -3.2641 -0.5549 34 1 4.3068 -3.0337 0.9164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:35 Heat of formation + Delta-G solvation = -18.417430 kcal Electronic energy + Delta-G solvation = -21375.629857 eV Core-core repulsion = 17934.818059 eV Total energy + Delta-G solvation = -3440.811798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89846 -39.22555 -37.54173 -34.69638 -33.54119 -32.43218 -32.33769 -30.59229 -29.82862 -28.30213 -25.79945 -24.33729 -23.65094 -22.35006 -20.29834 -19.60646 -17.73082 -17.30654 -17.15605 -16.07282 -15.56824 -15.47264 -15.14886 -14.69908 -14.50930 -14.30802 -13.74081 -13.29426 -13.21956 -12.98188 -12.63942 -12.27030 -12.19404 -11.75636 -11.58930 -11.35611 -11.11475 -10.89596 -10.57021 -10.31701 -10.23043 -10.19904 -10.11688 -9.41687 -9.31484 -9.01364 -8.75398 -8.50519 -8.20405 -6.22508 -4.34730 0.14476 0.77033 1.04475 2.61774 3.11789 3.29598 3.41546 3.59341 3.60146 3.90096 4.29714 4.38800 4.41354 4.51475 4.73296 5.07206 5.21953 5.30160 5.37255 5.40733 5.50231 5.74664 5.82939 5.97845 6.04354 6.26201 6.44328 6.59581 6.64411 6.69672 7.11960 7.31309 7.45818 7.80813 8.18064 8.27937 8.72225 8.87978 9.40453 10.87850 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.002908 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.243256 B = 9626.487542 C =10449.159079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.089 3.911 3 Si 0.876 3.124 4 H -0.282 1.282 5 H -0.300 1.300 6 H -0.228 1.228 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.216 3.784 10 O -0.572 6.572 11 C -0.131 4.131 12 C 0.103 3.897 13 N -0.582 5.582 14 C 0.570 3.430 15 O -0.542 6.542 16 C 0.109 3.891 17 C -0.109 4.109 18 C -0.051 4.051 19 C -0.135 4.135 20 Br -0.031 7.031 21 C 0.130 3.870 22 N -0.441 5.441 23 C 0.093 3.907 24 H 0.267 0.733 25 H 0.365 0.635 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.078 0.922 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.275 -4.601 -9.495 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.116 4.116 3 Si 0.704 3.296 4 H -0.209 1.209 5 H -0.228 1.228 6 H -0.151 1.151 7 C -0.589 4.589 8 H 0.097 0.903 9 C 0.176 3.824 10 O -0.379 6.379 11 C -0.168 4.168 12 C -0.019 4.019 13 N -0.312 5.312 14 C 0.356 3.644 15 O -0.420 6.420 16 C -0.030 4.030 17 C -0.130 4.130 18 C -0.079 4.079 19 C -0.217 4.217 20 Br 0.053 6.947 21 C -0.031 4.031 22 N -0.152 5.152 23 C -0.029 4.029 24 H 0.077 0.923 25 H 0.212 0.788 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.176 0.824 31 H 0.169 0.831 32 H 0.189 0.811 33 H 0.096 0.904 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.260 -3.917 -9.838 25.557 hybrid contribution 0.239 -0.238 0.215 0.400 sum 23.499 -4.155 -9.624 25.731 Atomic orbital electron populations 1.69930 1.06687 1.27665 1.48025 1.24944 0.94576 0.99692 0.92394 0.87061 0.81743 0.82032 0.78790 1.20889 1.22786 1.15068 1.21184 0.88175 0.95204 1.54352 0.90349 1.20001 0.93574 0.86083 0.82789 1.86512 1.78599 1.56851 1.15900 1.23198 0.94410 0.99720 0.99520 1.22771 0.97763 0.79413 1.01941 1.48441 1.25829 1.07528 1.49436 1.17395 0.82089 0.84154 0.80723 1.90781 1.71851 1.22263 1.57151 1.21504 0.95788 0.89282 0.96405 1.22179 0.93367 1.01328 0.96159 1.21600 0.96129 0.95584 0.94572 1.23218 0.97681 0.97471 1.03284 1.96780 1.35888 1.95552 1.66436 1.23020 0.88677 0.99177 0.92275 1.68143 1.15279 1.21916 1.09885 1.22944 0.84693 1.01150 0.94102 0.92317 0.78810 0.89473 0.90656 0.91483 0.88576 0.82395 0.83089 0.81131 0.90388 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 2 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 3 Si 0.88 20.97 23.89 -169.99 -4.06 16.91 16 4 H -0.28 -6.56 7.08 56.52 0.40 -6.16 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.23 -5.32 5.50 56.52 0.31 -5.00 16 7 C -0.55 -14.59 8.82 -34.44 -0.30 -14.89 16 8 H 0.08 2.26 7.82 -52.49 -0.41 1.85 16 9 C 0.22 4.77 0.67 -89.94 -0.06 4.71 16 10 O -0.57 -12.28 10.45 -35.23 -0.37 -12.65 16 11 C -0.13 -2.66 4.83 -24.46 -0.12 -2.78 16 12 C 0.10 1.81 5.95 -2.41 -0.01 1.79 16 13 N -0.58 -10.89 3.32 -171.39 -0.57 -11.46 16 14 C 0.57 10.18 7.84 -12.21 -0.10 10.08 16 15 O -0.54 -10.82 16.65 5.34 0.09 -10.73 16 16 C 0.11 1.55 6.72 -83.01 -0.56 0.99 16 17 C -0.11 -1.22 9.63 -39.06 -0.38 -1.60 16 18 C -0.05 -0.45 9.93 -39.29 -0.39 -0.84 16 19 C -0.13 -1.23 6.26 -39.23 -0.25 -1.47 16 20 Br -0.03 -0.24 33.73 -68.01 -2.29 -2.53 16 21 C 0.13 1.33 10.94 -17.53 -0.19 1.14 16 22 N -0.44 -5.81 6.59 -9.78 -0.06 -5.88 16 23 C 0.09 1.90 6.21 -3.07 -0.02 1.88 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.36 6.80 9.08 45.56 0.41 7.22 16 26 H 0.09 1.81 8.05 -51.93 -0.42 1.39 16 27 H 0.08 1.56 5.00 -51.93 -0.26 1.30 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.52 5.87 -51.93 -0.30 1.22 16 30 H 0.16 1.65 7.64 -52.49 -0.40 1.25 16 31 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.08 1.69 7.66 -51.92 -0.40 1.29 16 34 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -31.24 303.27 -7.08 -38.33 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -2.69 Total: 7.42 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.47 Total: 1.36 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.14 Total: -42.69 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.28 Total: -23.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.06 Total: 16.91 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -2.29 Total: -2.53 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.24 -7.08 -38.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.912 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds