Wall clock time and date at job start Sat Apr 11 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48498 * 109.46993 * 264.83479 * 3 2 1 5 5 H 1.48494 * 109.47188 * 24.83523 * 3 2 1 6 6 H 1.48500 * 109.47320 * 144.83768 * 3 2 1 7 7 C 1.37874 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00434 * 3.38565 * 7 2 1 9 9 C 1.50704 * 119.99833 * 183.38586 * 7 2 1 10 10 O 1.42898 * 110.64210 * 61.91889 * 9 7 2 11 11 C 1.55153 * 110.87373 * 298.67062 * 9 7 2 12 12 C 1.55130 * 101.48724 * 205.89917 * 11 9 7 13 13 N 1.47429 * 104.72097 * 37.29567 * 12 11 9 14 14 C 1.34772 * 125.64519 * 155.82125 * 13 12 11 15 15 O 1.21526 * 119.99797 * 179.69302 * 14 13 12 16 16 C 1.48120 * 120.00385 * 359.68670 * 14 13 12 17 17 C 1.39341 * 119.71507 * 180.02562 * 16 14 13 18 18 C 1.38540 * 119.07328 * 180.02562 * 17 16 14 19 19 C 1.38730 * 118.48131 * 359.97438 * 18 17 16 20 20 Br 1.89100 * 120.33241 * 180.29952 * 19 18 17 21 21 C 1.38686 * 119.33403 * 0.02562 * 19 18 17 22 22 N 1.31492 * 120.88471 * 359.97438 * 21 19 18 23 23 C 1.47019 * 108.69845 * 335.55185 * 13 12 11 24 24 H 0.97000 * 119.99782 * 0.02562 * 1 2 3 25 25 H 0.96705 * 113.99962 * 61.68824 * 10 9 7 26 26 H 1.09004 * 111.00511 * 324.13732 * 11 9 7 27 27 H 1.08995 * 111.00452 * 87.94889 * 11 9 7 28 28 H 1.08995 * 110.49633 * 278.45361 * 12 11 9 29 29 H 1.09000 * 110.34112 * 156.06348 * 12 11 9 30 30 H 1.08001 * 120.45839 * 359.97438 * 17 16 14 31 31 H 1.08004 * 120.75466 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.55892 * 180.02562 * 21 19 18 33 33 H 1.09008 * 109.88084 * 120.70806 * 23 13 12 34 34 H 1.09001 * 109.88363 * 241.70890 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6058 1.9834 -1.3944 5 1 1.3963 2.6817 0.5880 6 1 3.4879 1.4742 0.8063 7 6 2.0045 -1.1940 -0.0005 8 1 1.4660 -2.1285 -0.0562 9 6 3.5096 -1.1952 0.0765 10 8 3.9519 -0.6017 1.2989 11 6 4.1262 -0.4623 -1.1440 12 6 5.5202 -1.1366 -1.2375 13 7 5.2774 -2.5486 -0.8898 14 6 6.0452 -3.5921 -1.2611 15 8 5.7512 -4.7179 -0.9105 16 6 7.2474 -3.3668 -2.0965 17 6 8.0367 -4.4502 -2.4773 18 6 9.1584 -4.2242 -3.2583 19 6 9.4524 -2.9211 -3.6326 20 35 10.9659 -2.5539 -4.7052 21 6 8.6220 -1.8911 -3.2170 22 7 7.5635 -2.1347 -2.4759 23 6 4.0625 -2.6289 -0.0657 24 1 -0.4850 0.8401 -0.0004 25 1 3.6571 -1.0694 2.0924 26 1 3.5401 -0.6427 -2.0452 27 1 4.2224 0.6061 -0.9506 28 1 6.2114 -0.6843 -0.5263 29 1 5.9122 -1.0575 -2.2514 30 1 7.7780 -5.4518 -2.1672 31 1 9.7891 -5.0440 -3.5694 32 1 8.8472 -0.8753 -3.5066 33 1 3.3240 -3.2641 -0.5549 34 1 4.3068 -3.0337 0.9164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:34 Heat of formation + Delta-G solvation = -41.587626 kcal Electronic energy + Delta-G solvation = -21376.634592 eV Core-core repulsion = 17934.818059 eV Total energy + Delta-G solvation = -3441.816533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.94915 -40.55156 -39.09326 -36.28427 -34.51959 -34.40828 -33.17398 -32.04216 -30.86569 -29.91148 -27.47563 -25.44436 -24.65922 -23.77841 -21.77401 -21.14165 -19.50767 -18.69504 -18.12468 -17.08762 -16.99482 -16.89181 -16.57599 -16.44568 -15.67689 -15.41463 -15.01075 -14.79828 -14.73697 -14.38936 -14.05115 -14.01359 -13.38375 -13.17630 -13.06484 -12.84036 -12.45071 -12.34683 -12.14668 -11.82964 -11.68053 -11.41751 -11.01540 -10.96904 -10.80972 -10.49717 -10.34056 -10.13885 -9.67934 -8.36509 -6.52421 -0.76200 0.00068 0.33296 1.39130 1.46185 1.47774 1.69134 1.79506 2.40502 2.57093 2.87732 2.99645 3.41819 3.58538 3.60219 3.70996 3.82328 3.83938 4.03124 4.30197 4.40054 4.53897 4.60920 4.70254 4.74296 4.83061 4.95132 5.09374 5.11736 5.28804 5.43296 5.51432 6.06026 6.34570 6.46417 6.58181 6.90977 7.11805 7.29282 8.77691 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.002908 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.243256 B = 9626.487542 C =10449.159079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.037 3.963 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.307 1.307 6 H -0.214 1.214 7 C -0.553 4.553 8 H 0.037 0.963 9 C 0.218 3.782 10 O -0.572 6.572 11 C -0.133 4.133 12 C 0.119 3.881 13 N -0.591 5.591 14 C 0.568 3.432 15 O -0.573 6.573 16 C 0.081 3.919 17 C -0.105 4.105 18 C -0.039 4.039 19 C -0.127 4.127 20 Br -0.009 7.009 21 C 0.128 3.872 22 N -0.459 5.459 23 C 0.100 3.900 24 H 0.269 0.731 25 H 0.377 0.623 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.161 0.839 31 H 0.184 0.816 32 H 0.196 0.804 33 H 0.054 0.946 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.049 -3.766 -10.794 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.192 1.192 5 H -0.236 1.236 6 H -0.136 1.136 7 C -0.590 4.590 8 H 0.055 0.945 9 C 0.177 3.823 10 O -0.379 6.379 11 C -0.171 4.171 12 C -0.003 4.003 13 N -0.321 5.321 14 C 0.357 3.643 15 O -0.453 6.453 16 C -0.056 4.056 17 C -0.127 4.127 18 C -0.066 4.066 19 C -0.209 4.209 20 Br 0.076 6.924 21 C -0.033 4.033 22 N -0.171 5.171 23 C -0.023 4.023 24 H 0.078 0.922 25 H 0.225 0.775 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.135 0.865 30 H 0.179 0.821 31 H 0.201 0.799 32 H 0.213 0.787 33 H 0.072 0.928 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 27.062 -3.098 -11.142 29.429 hybrid contribution -0.847 -0.609 0.558 1.183 sum 26.214 -3.707 -10.584 28.512 Atomic orbital electron populations 1.70063 1.08549 1.28583 1.50299 1.25770 0.95147 1.03300 0.92076 0.86100 0.80599 0.77341 0.79670 1.19245 1.23560 1.13595 1.21416 0.90772 0.93544 1.53308 0.94472 1.19805 0.90989 0.87636 0.83844 1.86453 1.78258 1.57086 1.16120 1.23161 0.96004 0.99967 0.97970 1.22732 0.95845 0.78240 1.03461 1.48468 1.25423 1.08472 1.49703 1.17997 0.82722 0.83317 0.80290 1.90748 1.72930 1.23308 1.58325 1.21001 0.95477 0.90868 0.98205 1.22247 0.93610 1.00671 0.96123 1.21928 0.95190 0.96533 0.92981 1.23393 0.97798 0.97364 1.02366 1.96831 1.34432 1.95485 1.65617 1.23413 0.87851 1.00626 0.91438 1.67935 1.16774 1.21480 1.10911 1.22613 0.85393 0.99700 0.94557 0.92247 0.77480 0.90362 0.90245 0.90617 0.86502 0.82098 0.79878 0.78715 0.92755 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 13.96 21.45 0.30 -56.67 16 2 C 0.04 2.10 5.47 84.65 0.46 2.56 16 3 Si 0.94 43.16 23.89 68.60 1.64 44.80 16 4 H -0.27 -11.55 7.08 99.48 0.70 -10.84 16 5 H -0.31 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.21 -9.28 5.50 99.48 0.55 -8.73 16 7 C -0.55 -30.20 8.82 25.60 0.23 -29.98 16 8 H 0.04 2.28 7.82 -2.91 -0.02 2.25 16 9 C 0.22 9.65 0.67 -10.35 -0.01 9.64 16 10 O -0.57 -23.83 10.45 -148.98 -1.56 -25.38 16 11 C -0.13 -5.27 4.83 32.06 0.15 -5.11 16 12 C 0.12 3.95 5.95 86.93 0.52 4.47 16 13 N -0.59 -21.90 3.32 -814.44 -2.71 -24.61 16 14 C 0.57 20.17 7.84 86.87 0.68 20.85 16 15 O -0.57 -23.20 16.65 -3.80 -0.06 -23.26 16 16 C 0.08 2.20 6.72 41.90 0.28 2.48 16 17 C -0.10 -2.14 9.63 22.61 0.22 -1.92 16 18 C -0.04 -0.55 9.93 22.46 0.22 -0.33 16 19 C -0.13 -1.86 6.26 22.49 0.14 -1.72 16 20 Br -0.01 -0.10 33.73 -20.37 -0.69 -0.79 16 21 C 0.13 2.20 10.94 84.85 0.93 3.13 16 22 N -0.46 -11.01 6.59 -184.84 -1.22 -12.23 16 23 C 0.10 4.19 6.21 86.73 0.54 4.73 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 25 H 0.38 13.75 9.08 -74.05 -0.67 13.08 16 26 H 0.08 3.21 8.05 -2.39 -0.02 3.19 16 27 H 0.08 3.08 5.00 -2.39 -0.01 3.07 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.12 3.43 5.87 -2.39 -0.01 3.42 16 30 H 0.16 3.14 7.64 -2.91 -0.02 3.11 16 31 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 32 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.05 2.49 7.66 -2.38 -0.02 2.47 16 34 H 0.07 2.65 8.06 -2.39 -0.02 2.63 16 Total: -1.00 -69.24 303.27 0.39 -68.85 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.32 Total: 20.49 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 4.36 Total: 8.80 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -3.63 Total: -93.51 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -1.62 Total: -48.65 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.64 Total: 44.80 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -0.69 Total: -0.79 kcal Total: -69.24 0.39 -68.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.263 kcal (2) G-P(sol) polarization free energy of solvation -69.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds