Wall clock time and date at job start Sat Apr 11 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47455 * 269.99774 * 3 2 1 5 5 H 1.48508 * 109.47357 * 30.00014 * 3 2 1 6 6 H 1.48501 * 109.47048 * 150.00015 * 3 2 1 7 7 C 1.37875 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00481 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99743 * 0.27676 * 7 2 1 10 10 O 1.42901 * 110.64544 * 300.42668 * 9 7 2 11 11 C 1.55158 * 110.72005 * 177.28201 * 9 7 2 12 12 C 1.54909 * 101.58161 * 206.13460 * 11 9 7 13 13 N 1.47424 * 104.83366 * 37.00974 * 12 11 9 14 14 C 1.34777 * 125.65137 * 155.83224 * 13 12 11 15 15 O 1.21547 * 120.00526 * 176.33078 * 14 13 12 16 16 C 1.47847 * 119.99701 * 356.33391 * 14 13 12 17 17 C 1.39563 * 120.55775 * 26.63521 * 16 14 13 18 18 N 1.31661 * 120.59181 * 179.97438 * 17 16 14 19 19 C 1.31953 * 121.88992 * 0.02562 * 18 17 16 20 20 C 1.38404 * 121.06448 * 359.97427 * 19 18 17 21 21 Br 1.89102 * 120.35548 * 179.97438 * 20 19 18 22 22 C 1.38484 * 119.28481 * 359.77219 * 20 19 18 23 23 C 1.47315 * 108.73641 * 335.71680 * 13 12 11 24 24 H 0.97000 * 120.00103 * 359.97438 * 1 2 3 25 25 H 0.96698 * 113.99871 * 59.28906 * 10 9 7 26 26 H 1.09000 * 111.00658 * 324.20866 * 11 9 7 27 27 H 1.08993 * 111.00379 * 88.02199 * 11 9 7 28 28 H 1.09002 * 110.36813 * 155.84728 * 12 11 9 29 29 H 1.08998 * 110.37032 * 278.16728 * 12 11 9 30 30 H 1.08006 * 119.70328 * 359.97438 * 17 16 14 31 31 H 1.07997 * 119.46480 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.86103 * 180.25180 * 22 20 19 33 33 H 1.09004 * 110.06645 * 241.87403 * 23 13 12 34 34 H 1.08997 * 109.85419 * 120.61107 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 -0.0052 10 8 0.4079 -2.5991 1.1442 11 6 2.2323 -3.6992 -0.0723 12 6 1.3501 -4.7854 -0.7367 13 7 0.5317 -4.0560 -1.7225 14 6 -0.0302 -4.5892 -2.8254 15 8 -0.7426 -3.9066 -3.5352 16 6 0.2199 -6.0046 -3.1717 17 6 0.5322 -6.9337 -2.1783 18 7 0.7546 -8.1945 -2.4859 19 6 0.6933 -8.6296 -3.7301 20 6 0.3896 -7.7716 -4.7727 21 35 0.3079 -8.4166 -6.5484 22 6 0.1421 -6.4364 -4.5010 23 6 0.4270 -2.6482 -1.3015 24 1 -0.4850 0.8400 0.0004 25 1 -0.2490 -1.8928 1.2127 26 1 3.0961 -3.4634 -0.6938 27 1 2.5440 -4.0052 0.9263 28 1 1.9734 -5.5273 -1.2359 29 1 0.7121 -5.2632 0.0068 30 1 0.5921 -6.6157 -1.1478 31 1 0.8832 -9.6722 -3.9382 32 1 -0.1012 -5.7454 -5.2945 33 1 -0.6149 -2.3916 -1.1099 34 1 0.8343 -1.9988 -2.0764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:46 Heat of formation + Delta-G solvation = -52.098178 kcal Electronic energy + Delta-G solvation = -21364.562398 eV Core-core repulsion = 17922.290093 eV Total energy + Delta-G solvation = -3442.272304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.99343 -40.49548 -38.97451 -36.28062 -34.35525 -34.21039 -33.51797 -31.75738 -30.84950 -29.57514 -27.44499 -25.71564 -24.75999 -23.77337 -21.54321 -20.94823 -19.18784 -18.65614 -18.19301 -17.72806 -17.30252 -16.75000 -16.45287 -16.13630 -15.35692 -15.25696 -14.85683 -14.82149 -14.71594 -14.45555 -13.90591 -13.72793 -13.44842 -13.19650 -12.85434 -12.56746 -12.45227 -12.33509 -12.28998 -12.10596 -11.59013 -11.46831 -11.19505 -11.04967 -10.71941 -10.65492 -10.29916 -10.12251 -9.71973 -8.28157 -6.43651 -0.63644 -0.26599 0.29891 1.40828 1.43792 1.52827 1.55634 1.84820 2.37115 2.45562 2.98467 3.06967 3.31723 3.50003 3.54601 3.73543 3.84112 3.94895 4.09878 4.20960 4.35250 4.47296 4.58518 4.63275 4.72496 4.96366 5.05840 5.11877 5.19134 5.33929 5.47308 5.73407 6.03104 6.44339 6.49871 6.63899 6.92288 7.27512 7.35477 8.77865 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.002777 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.336237 B =10079.000967 C =10604.459221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.234 3.766 10 O -0.586 6.586 11 C -0.112 4.112 12 C 0.092 3.908 13 N -0.604 5.604 14 C 0.563 3.437 15 O -0.585 6.585 16 C -0.181 4.181 17 C 0.141 3.859 18 N -0.480 5.480 19 C 0.160 3.840 20 C -0.155 4.155 21 Br -0.009 7.009 22 C 0.003 3.997 23 C 0.120 3.880 24 H 0.271 0.729 25 H 0.377 0.623 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.192 0.808 31 H 0.203 0.797 32 H 0.149 0.851 33 H 0.037 0.963 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -19.577 -9.360 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.150 4.150 12 C -0.029 4.029 13 N -0.335 5.335 14 C 0.352 3.648 15 O -0.467 6.467 16 C -0.187 4.187 17 C -0.016 4.016 18 N -0.188 5.188 19 C 0.001 3.999 20 C -0.236 4.236 21 Br 0.075 6.925 22 C -0.026 4.026 23 C -0.003 4.003 24 H 0.080 0.920 25 H 0.227 0.773 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.208 0.792 31 H 0.220 0.780 32 H 0.167 0.833 33 H 0.055 0.945 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.901 -20.488 -9.645 22.830 hybrid contribution -0.612 2.843 -0.548 2.959 sum 2.289 -17.645 -10.193 20.506 Atomic orbital electron populations 1.69739 1.07060 1.28538 1.50197 1.25789 0.95779 1.02748 0.93105 0.85494 0.78886 0.78861 0.78045 1.20564 1.20806 1.18905 1.21859 0.94036 0.91340 1.52351 0.91350 1.19700 0.86682 0.93587 0.80704 1.86080 1.51654 1.54479 1.47240 1.22781 0.96994 0.93365 1.01859 1.22945 0.93569 0.95566 0.90824 1.48790 1.49926 1.11947 1.22849 1.18142 0.79661 0.86985 0.79972 1.90749 1.40095 1.63551 1.52321 1.20794 1.07969 0.94005 0.95931 1.24027 0.88954 0.87679 1.00915 1.68056 1.14549 1.15561 1.20634 1.23644 0.89164 1.01206 0.85865 1.22961 1.09878 0.95929 0.94861 1.96793 1.97549 1.86900 1.11219 1.21708 0.90045 0.94832 0.95973 1.22690 0.99787 0.79145 0.98662 0.92011 0.77279 0.89688 0.88529 0.87669 0.89096 0.79160 0.78007 0.83347 0.94490 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.72 10.96 21.45 0.24 -48.48 16 2 C 0.03 1.37 5.27 84.65 0.45 1.82 16 3 Si 0.96 41.20 29.54 68.60 2.03 43.23 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.56 -28.29 8.11 25.60 0.21 -28.08 16 8 H 0.07 3.37 7.77 -2.91 -0.02 3.35 16 9 C 0.23 10.79 0.85 -10.35 -0.01 10.78 16 10 O -0.59 -28.34 13.08 -148.98 -1.95 -30.28 16 11 C -0.11 -3.97 6.23 31.99 0.20 -3.77 16 12 C 0.09 2.76 5.02 86.86 0.44 3.19 16 13 N -0.60 -23.34 3.33 -814.44 -2.71 -26.05 16 14 C 0.56 21.58 7.67 86.79 0.67 22.24 16 15 O -0.59 -27.23 17.03 -3.86 -0.07 -27.30 16 16 C -0.18 -5.20 5.72 -19.99 -0.11 -5.31 16 17 C 0.14 3.35 9.13 85.04 0.78 4.13 16 18 N -0.48 -10.20 10.34 -194.68 -2.01 -12.21 16 19 C 0.16 2.81 10.93 84.71 0.93 3.73 16 20 C -0.15 -3.06 6.24 22.37 0.14 -2.92 16 21 Br -0.01 -0.15 33.73 -20.37 -0.69 -0.84 16 22 C 0.00 0.06 9.49 22.75 0.22 0.28 16 23 C 0.12 5.71 5.39 86.67 0.47 6.18 16 24 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 25 H 0.38 19.30 7.24 -74.06 -0.54 18.76 16 26 H 0.08 2.89 8.03 -2.39 -0.02 2.87 16 27 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.11 2.44 6.13 -2.39 -0.01 2.42 16 29 H 0.09 2.46 7.32 -2.39 -0.02 2.45 16 30 H 0.19 4.05 4.53 -2.91 -0.01 4.04 16 31 H 0.20 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.15 3.89 7.94 -2.91 -0.02 3.87 16 33 H 0.04 1.97 8.00 -2.39 -0.02 1.95 16 34 H 0.04 2.02 7.81 -2.39 -0.02 2.00 16 Total: -1.00 -62.30 308.68 -0.19 -62.49 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.62 Total: 27.18 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 4.36 Total: 12.26 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -4.49 Total: -86.74 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -2.01 Total: -57.58 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.69 Total: -0.84 kcal Total: -62.30 -0.19 -62.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.389 kcal (2) G-P(sol) polarization free energy of solvation -62.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds