Wall clock time and date at job start Sat Apr 11 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48505 * 109.46929 * 269.99610 * 3 2 1 5 5 H 1.48500 * 109.47296 * 30.00113 * 3 2 1 6 6 H 1.48497 * 109.46829 * 149.99950 * 3 2 1 7 7 C 1.37872 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99998 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63961 * 298.31166 * 9 7 2 11 11 C 1.55448 * 110.86500 * 175.08908 * 9 7 2 12 12 C 1.54909 * 101.45384 * 206.07585 * 11 9 7 13 13 N 1.47426 * 104.92965 * 37.00064 * 12 11 9 14 14 C 1.34775 * 125.64946 * 155.83813 * 13 12 11 15 15 O 1.21553 * 119.99605 * 354.29798 * 14 13 12 16 16 C 1.47847 * 120.00365 * 174.29449 * 14 13 12 17 17 C 1.39584 * 120.13351 * 7.20799 * 16 14 13 18 18 C 1.38058 * 119.83601 * 180.02562 * 17 16 14 19 19 Cl 1.73600 * 119.94101 * 180.02562 * 18 17 16 20 20 C 1.38490 * 120.11941 * 0.02562 * 18 17 16 21 21 C 1.38322 * 120.28150 * 0.02562 * 20 18 17 22 22 N 1.48012 * 119.92147 * 180.02562 * 21 20 18 23 23 O 1.21799 * 120.00204 * 359.97438 * 22 21 20 24 24 O 1.21808 * 119.99942 * 179.97438 * 22 21 20 25 25 C 1.37990 * 120.15282 * 359.67489 * 21 20 18 26 26 C 1.47026 * 108.70354 * 335.82006 * 13 12 11 27 27 H 0.96994 * 120.00116 * 0.02562 * 1 2 3 28 28 H 0.96702 * 114.00223 * 61.68999 * 10 9 7 29 29 H 1.08989 * 111.11507 * 88.01511 * 11 9 7 30 30 H 1.08999 * 111.00616 * 324.08065 * 11 9 7 31 31 H 1.09003 * 110.36212 * 278.10587 * 12 11 9 32 32 H 1.08997 * 110.36948 * 155.89713 * 12 11 9 33 33 H 1.07997 * 120.08256 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.86257 * 179.97438 * 20 18 17 35 35 H 1.08006 * 120.05602 * 180.32546 * 25 21 20 36 36 H 1.08997 * 109.88235 * 120.47447 * 26 13 12 37 37 H 1.09004 * 109.88019 * 241.48486 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4496 -2.6180 1.1776 11 6 2.2278 -3.7021 -0.1232 12 6 1.3157 -4.7735 -0.7712 13 7 0.4621 -4.0263 -1.7128 14 6 -0.1441 -4.5406 -2.8012 15 8 0.0751 -5.6892 -3.1331 16 6 -1.0756 -3.7077 -3.5914 17 6 -1.2156 -2.3487 -3.3051 18 6 -2.0877 -1.5768 -4.0465 19 17 -2.2634 0.1137 -3.6932 20 6 -2.8225 -2.1487 -5.0716 21 6 -2.6884 -3.4951 -5.3589 22 7 -3.4772 -4.0980 -6.4566 23 8 -4.2437 -3.4088 -7.1055 24 8 -3.3599 -5.2834 -6.7111 25 6 -1.8155 -4.2760 -4.6291 26 6 0.3813 -2.6274 -1.2677 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2286 -1.9339 1.2624 29 1 2.5767 -4.0270 0.8569 30 1 3.0675 -3.4584 -0.7740 31 1 0.7054 -5.2618 -0.0115 32 1 1.9159 -5.5098 -1.3056 33 1 -0.6438 -1.9024 -2.5050 34 1 -3.5038 -1.5411 -5.6487 35 1 -1.7082 -5.3260 -4.8582 36 1 0.7627 -1.9678 -2.0471 37 1 -0.6529 -2.3706 -1.0383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:50 Heat of formation + Delta-G solvation = -40.390689 kcal Electronic energy + Delta-G solvation = -27526.037016 eV Core-core repulsion = 23298.700072 eV Total energy + Delta-G solvation = -4227.336944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.35418 -40.61918 -38.88228 -37.59132 -36.73409 -36.65969 -34.58428 -32.80452 -32.43581 -31.48502 -30.24242 -28.37487 -26.70819 -25.72999 -24.53597 -22.78921 -22.30977 -20.47283 -19.97949 -18.95606 -18.74973 -17.69804 -17.45108 -17.02504 -16.49292 -16.10833 -15.55383 -15.32292 -15.10043 -14.99247 -14.44477 -14.00752 -13.56294 -13.30131 -13.19303 -12.91898 -12.33566 -12.12832 -11.89636 -11.87525 -11.79224 -11.71881 -11.46432 -11.27524 -11.25134 -11.15626 -10.87154 -10.84350 -10.63830 -10.44551 -10.03529 -9.84670 -9.53009 -9.36866 -8.91729 -8.56478 -8.31911 -6.54820 -4.62976 -0.39572 0.25778 1.06793 1.07273 1.80463 2.46811 3.03696 3.07463 3.14579 3.17781 3.35143 4.05066 4.11207 4.27345 4.40676 4.58280 4.62647 4.73052 4.82940 5.23502 5.34718 5.42704 5.51529 5.58710 5.64494 5.73899 5.81934 5.95217 6.10596 6.19860 6.25957 6.50094 6.56010 6.73012 7.01715 7.48255 7.48635 7.66121 7.80504 8.17972 8.42633 9.03844 9.13545 10.52914 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.004405 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.367382 B = 6354.903790 C = 8224.765954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.251 3.749 10 O -0.580 6.580 11 C -0.119 4.119 12 C 0.109 3.891 13 N -0.599 5.599 14 C 0.568 3.432 15 O -0.544 6.544 16 C -0.110 4.110 17 C -0.063 4.063 18 C -0.042 4.042 19 Cl -0.023 7.023 20 C -0.035 4.035 21 C -0.047 4.047 22 N 0.033 4.967 23 O -0.157 6.157 24 O -0.152 6.152 25 C 0.001 3.999 26 C 0.072 3.928 27 H 0.273 0.727 28 H 0.383 0.617 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.209 0.791 34 H 0.165 0.835 35 H 0.170 0.830 36 H 0.081 0.919 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 -1.114 -5.840 7.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.211 3.789 10 O -0.389 6.389 11 C -0.157 4.157 12 C -0.013 4.013 13 N -0.331 5.331 14 C 0.356 3.644 15 O -0.424 6.424 16 C -0.114 4.114 17 C -0.081 4.081 18 C -0.070 4.070 19 Cl 0.006 6.994 20 C -0.055 4.055 21 C -0.131 4.131 22 N 0.553 4.447 23 O -0.373 6.373 24 O -0.369 6.369 25 C -0.019 4.019 26 C -0.050 4.050 27 H 0.083 0.917 28 H 0.233 0.767 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.225 0.775 34 H 0.182 0.818 35 H 0.187 0.813 36 H 0.099 0.901 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.058 -1.687 -5.385 6.418 hybrid contribution -0.367 1.625 -0.490 1.737 sum -3.426 -0.062 -5.874 6.801 Atomic orbital electron populations 1.69633 1.05865 1.28318 1.49780 1.25020 0.95104 0.99679 0.93120 0.86430 0.80032 0.82310 0.78449 1.20314 1.20862 1.19595 1.21528 0.93966 0.89787 1.52342 0.91260 1.19548 0.86294 0.92491 0.80616 1.86170 1.51745 1.56518 1.44461 1.22847 0.97344 0.94795 1.00682 1.22319 0.92648 0.95156 0.91173 1.48647 1.47271 1.12966 1.24179 1.17415 0.80599 0.86154 0.80200 1.90775 1.64302 1.17862 1.69470 1.19880 1.00011 0.93747 0.97789 1.23868 0.93490 0.92805 0.97952 1.20642 0.99949 0.88640 0.97744 1.98446 1.96670 1.10340 1.93955 1.21011 0.97023 0.92358 0.95146 1.20692 1.02491 0.94133 0.95752 1.43424 0.99644 1.00906 1.00680 1.94538 1.32735 1.61368 1.48700 1.94573 1.71135 0.98673 1.72507 1.21139 0.88906 1.01995 0.89905 1.23692 1.02201 0.78661 1.00415 0.91714 0.76695 0.89991 0.90208 0.91199 0.90978 0.77508 0.81798 0.81279 0.90106 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -19.64 10.96 55.43 0.61 -19.03 16 2 C 0.07 1.65 5.28 -17.82 -0.09 1.55 16 3 Si 0.90 18.12 29.54 -169.99 -5.02 13.10 16 4 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.54 -12.09 8.13 -34.44 -0.28 -12.37 16 8 H 0.07 1.57 7.78 -52.49 -0.41 1.16 16 9 C 0.25 5.13 0.85 -89.78 -0.08 5.06 16 10 O -0.58 -12.61 13.08 -35.23 -0.46 -13.07 16 11 C -0.12 -2.10 6.26 -24.42 -0.15 -2.25 16 12 C 0.11 1.83 6.92 -2.53 -0.02 1.82 16 13 N -0.60 -10.61 3.33 -175.61 -0.58 -11.19 16 14 C 0.57 9.98 7.81 -12.33 -0.10 9.88 16 15 O -0.54 -10.60 16.60 5.32 0.09 -10.51 16 16 C -0.11 -1.67 5.87 -104.98 -0.62 -2.29 16 17 C -0.06 -0.93 8.39 -39.15 -0.33 -1.26 16 18 C -0.04 -0.55 6.31 -39.55 -0.25 -0.80 16 19 Cl -0.02 -0.31 28.95 -51.86 -1.50 -1.81 16 20 C -0.04 -0.43 9.33 -39.46 -0.37 -0.80 16 21 C -0.05 -0.63 6.84 -80.01 -0.55 -1.18 16 22 N 0.03 0.47 4.45 33.93 0.15 0.62 16 23 O -0.16 -2.25 18.44 -29.46 -0.54 -2.79 16 24 O -0.15 -2.28 18.44 -29.46 -0.54 -2.82 16 25 C 0.00 0.01 9.10 -39.18 -0.36 -0.35 16 26 C 0.07 1.33 3.24 -3.06 -0.01 1.32 16 27 H 0.27 5.84 8.31 -40.82 -0.34 5.50 16 28 H 0.38 8.37 7.45 45.56 0.34 8.71 16 29 H 0.08 1.39 8.14 -51.94 -0.42 0.97 16 30 H 0.08 1.35 8.05 -51.93 -0.42 0.94 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.14 7.98 -51.93 -0.41 0.73 16 33 H 0.21 3.37 2.75 -57.66 -0.16 3.21 16 34 H 0.16 1.66 7.60 -52.49 -0.40 1.27 16 35 H 0.17 2.34 7.21 -52.48 -0.38 1.96 16 36 H 0.08 1.55 6.41 -51.93 -0.33 1.21 16 37 H 0.08 1.53 6.52 -51.93 -0.34 1.20 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -23.79 335.78 -8.43 -32.22 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -2.49 Total: 11.89 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.19 Total: -1.67 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.17 Total: -29.60 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.46 Total: -29.19 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.02 Total: 13.10 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.50 Total: -1.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -23.79 -8.43 -32.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.169 kcal (2) G-P(sol) polarization free energy of solvation -23.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds