Wall clock time and date at job start Sat Apr 11 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48505 * 109.46929 * 269.99610 * 3 2 1 5 5 H 1.48500 * 109.47296 * 30.00113 * 3 2 1 6 6 H 1.48497 * 109.46829 * 149.99950 * 3 2 1 7 7 C 1.37872 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99998 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63961 * 298.31166 * 9 7 2 11 11 C 1.55448 * 110.86500 * 175.08908 * 9 7 2 12 12 C 1.54909 * 101.45384 * 206.07585 * 11 9 7 13 13 N 1.47426 * 104.92965 * 37.00064 * 12 11 9 14 14 C 1.34775 * 125.64946 * 155.83813 * 13 12 11 15 15 O 1.21553 * 119.99605 * 354.29798 * 14 13 12 16 16 C 1.47847 * 120.00365 * 174.29449 * 14 13 12 17 17 C 1.39584 * 120.13351 * 7.20799 * 16 14 13 18 18 C 1.38058 * 119.83601 * 180.02562 * 17 16 14 19 19 Cl 1.73600 * 119.94101 * 180.02562 * 18 17 16 20 20 C 1.38490 * 120.11941 * 0.02562 * 18 17 16 21 21 C 1.38322 * 120.28150 * 0.02562 * 20 18 17 22 22 N 1.48012 * 119.92147 * 180.02562 * 21 20 18 23 23 O 1.21799 * 120.00204 * 359.97438 * 22 21 20 24 24 O 1.21808 * 119.99942 * 179.97438 * 22 21 20 25 25 C 1.37990 * 120.15282 * 359.67489 * 21 20 18 26 26 C 1.47026 * 108.70354 * 335.82006 * 13 12 11 27 27 H 0.96994 * 120.00116 * 0.02562 * 1 2 3 28 28 H 0.96702 * 114.00223 * 61.68999 * 10 9 7 29 29 H 1.08989 * 111.11507 * 88.01511 * 11 9 7 30 30 H 1.08999 * 111.00616 * 324.08065 * 11 9 7 31 31 H 1.09003 * 110.36212 * 278.10587 * 12 11 9 32 32 H 1.08997 * 110.36948 * 155.89713 * 12 11 9 33 33 H 1.07997 * 120.08256 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.86257 * 179.97438 * 20 18 17 35 35 H 1.08006 * 120.05602 * 180.32546 * 25 21 20 36 36 H 1.08997 * 109.88235 * 120.47447 * 26 13 12 37 37 H 1.09004 * 109.88019 * 241.48486 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4496 -2.6180 1.1776 11 6 2.2278 -3.7021 -0.1232 12 6 1.3157 -4.7735 -0.7712 13 7 0.4621 -4.0263 -1.7128 14 6 -0.1441 -4.5406 -2.8012 15 8 0.0751 -5.6892 -3.1331 16 6 -1.0756 -3.7077 -3.5914 17 6 -1.2156 -2.3487 -3.3051 18 6 -2.0877 -1.5768 -4.0465 19 17 -2.2634 0.1137 -3.6932 20 6 -2.8225 -2.1487 -5.0716 21 6 -2.6884 -3.4951 -5.3589 22 7 -3.4772 -4.0980 -6.4566 23 8 -4.2437 -3.4088 -7.1055 24 8 -3.3599 -5.2834 -6.7111 25 6 -1.8155 -4.2760 -4.6291 26 6 0.3813 -2.6274 -1.2677 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2286 -1.9339 1.2624 29 1 2.5767 -4.0270 0.8569 30 1 3.0675 -3.4584 -0.7740 31 1 0.7054 -5.2618 -0.0115 32 1 1.9159 -5.5098 -1.3056 33 1 -0.6438 -1.9024 -2.5050 34 1 -3.5038 -1.5411 -5.6487 35 1 -1.7082 -5.3260 -4.8582 36 1 0.7627 -1.9678 -2.0471 37 1 -0.6529 -2.3706 -1.0383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:50 Heat of formation + Delta-G solvation = -52.629455 kcal Electronic energy + Delta-G solvation = -27526.567728 eV Core-core repulsion = 23298.700072 eV Total energy + Delta-G solvation = -4227.867657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.47895 -41.92179 -40.15237 -39.06260 -37.86337 -37.74784 -36.15190 -34.25185 -33.91489 -32.61635 -31.65511 -29.85934 -27.91790 -27.22952 -25.88811 -23.95638 -23.61156 -21.80788 -21.40941 -20.21537 -19.90713 -19.05703 -18.81419 -18.33785 -17.77214 -17.44585 -16.88731 -16.73712 -16.45973 -16.27733 -15.93790 -15.23892 -14.91754 -14.85550 -14.66637 -14.24026 -13.57724 -13.50939 -13.45893 -13.25107 -12.99582 -12.85466 -12.79792 -12.59161 -12.44309 -12.41722 -12.32663 -12.30190 -12.18121 -12.05955 -11.45410 -11.10819 -11.00414 -10.60311 -10.46130 -10.21080 -9.75717 -8.23981 -6.36514 -1.51970 -0.87031 -0.06603 -0.04684 0.73197 1.24900 1.43727 1.51033 1.55914 1.73494 2.08767 2.41162 2.87259 3.03351 3.18312 3.32313 3.41901 3.48986 3.62203 3.86767 3.94652 4.10824 4.20028 4.28352 4.44451 4.48982 4.54290 4.61850 4.69619 4.79413 5.04462 5.07848 5.14752 5.24754 5.45634 5.77217 6.05874 6.32721 6.33407 6.67083 6.80273 7.32947 7.41467 8.81897 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.004405 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.367382 B = 6354.903790 C = 8224.765954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.048 3.952 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.558 4.558 8 H 0.061 0.939 9 C 0.236 3.764 10 O -0.588 6.588 11 C -0.114 4.114 12 C 0.110 3.890 13 N -0.602 5.602 14 C 0.568 3.432 15 O -0.566 6.566 16 C -0.119 4.119 17 C -0.062 4.062 18 C -0.040 4.040 19 Cl -0.019 7.019 20 C -0.014 4.014 21 C -0.047 4.047 22 N 0.033 4.967 23 O -0.142 6.142 24 O -0.175 6.175 25 C 0.007 3.993 26 C 0.091 3.909 27 H 0.274 0.726 28 H 0.379 0.621 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.194 0.806 34 H 0.191 0.809 35 H 0.170 0.830 36 H 0.075 0.925 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 -0.442 -6.683 7.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.155 4.155 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.596 4.596 8 H 0.079 0.921 9 C 0.196 3.804 10 O -0.396 6.396 11 C -0.151 4.151 12 C -0.011 4.011 13 N -0.333 5.333 14 C 0.358 3.642 15 O -0.448 6.448 16 C -0.123 4.123 17 C -0.080 4.080 18 C -0.068 4.068 19 Cl 0.011 6.989 20 C -0.034 4.034 21 C -0.130 4.130 22 N 0.553 4.447 23 O -0.363 6.363 24 O -0.386 6.386 25 C -0.013 4.013 26 C -0.031 4.031 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.210 0.790 34 H 0.208 0.792 35 H 0.187 0.813 36 H 0.093 0.907 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.627 -1.066 -6.219 7.278 hybrid contribution -0.221 1.484 -0.236 1.519 sum -3.848 0.418 -6.455 7.527 Atomic orbital electron populations 1.69674 1.06104 1.28624 1.49405 1.25434 0.95734 1.01262 0.93053 0.85766 0.78846 0.80103 0.78196 1.20111 1.21032 1.20286 1.21698 0.93816 0.91025 1.53063 0.92115 1.19735 0.86931 0.92908 0.80844 1.86165 1.51771 1.56332 1.45347 1.22825 0.97109 0.93924 1.01286 1.22342 0.92571 0.95031 0.91193 1.48673 1.47525 1.12669 1.24443 1.17697 0.80486 0.86074 0.79983 1.90758 1.65160 1.18853 1.70018 1.19603 1.00548 0.93724 0.98427 1.23620 0.93821 0.92666 0.97886 1.20565 0.99740 0.88731 0.97768 1.98453 1.96613 1.09890 1.93972 1.21214 0.96123 0.91872 0.94159 1.20653 1.02363 0.94444 0.95528 1.43483 0.99614 1.00839 1.00730 1.94526 1.32243 1.61179 1.48386 1.94592 1.71889 0.98986 1.73159 1.21084 0.88661 1.02103 0.89461 1.23358 1.01348 0.79018 0.99346 0.91643 0.77142 0.89399 0.89644 0.91084 0.89804 0.78958 0.79228 0.81297 0.90692 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -38.85 10.96 21.45 0.24 -38.62 16 2 C 0.05 2.11 5.28 84.65 0.45 2.55 16 3 Si 0.94 36.59 29.54 68.60 2.03 38.61 16 4 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.56 -24.97 8.13 25.60 0.21 -24.76 16 8 H 0.06 2.76 7.78 -2.91 -0.02 2.73 16 9 C 0.24 9.60 0.85 -10.25 -0.01 9.59 16 10 O -0.59 -25.50 13.08 -148.98 -1.95 -27.44 16 11 C -0.11 -3.95 6.26 32.09 0.20 -3.75 16 12 C 0.11 3.63 6.92 86.85 0.60 4.23 16 13 N -0.60 -21.04 3.33 -827.78 -2.75 -23.79 16 14 C 0.57 19.68 7.81 86.79 0.68 20.35 16 15 O -0.57 -21.82 16.60 -3.88 -0.06 -21.88 16 16 C -0.12 -3.52 5.87 -20.09 -0.12 -3.63 16 17 C -0.06 -1.75 8.39 22.55 0.19 -1.56 16 18 C -0.04 -0.98 6.31 22.29 0.14 -0.84 16 19 Cl -0.02 -0.45 28.95 -2.72 -0.08 -0.53 16 20 C -0.01 -0.30 9.33 22.35 0.21 -0.09 16 21 C -0.05 -1.15 6.84 36.34 0.25 -0.90 16 22 N 0.03 0.89 4.45 -46.56 -0.21 0.68 16 23 O -0.14 -3.68 18.44 18.89 0.35 -3.34 16 24 O -0.17 -5.04 18.44 18.88 0.35 -4.69 16 25 C 0.01 0.19 9.10 22.53 0.20 0.39 16 26 C 0.09 3.37 3.24 86.73 0.28 3.65 16 27 H 0.27 11.48 8.31 -92.71 -0.77 10.71 16 28 H 0.38 16.64 7.45 -74.06 -0.55 16.09 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.09 2.84 8.05 -2.39 -0.02 2.82 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 2.57 7.98 -2.39 -0.02 2.55 16 33 H 0.19 6.16 2.75 -7.77 -0.02 6.14 16 34 H 0.19 3.13 7.60 -2.91 -0.02 3.11 16 35 H 0.17 4.56 7.21 -2.91 -0.02 4.54 16 36 H 0.08 2.86 6.41 -2.39 -0.02 2.85 16 37 H 0.07 2.85 6.52 -2.39 -0.02 2.83 16 Total: -1.00 -48.45 335.78 1.79 -46.66 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.60 Total: 29.11 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 3.28 Total: 5.23 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -2.73 Total: -61.73 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -1.32 Total: -57.35 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.61 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -48.45 1.79 -46.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.974 kcal (2) G-P(sol) polarization free energy of solvation -48.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds