Wall clock time and date at job start Sat Apr 11 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99738 * 2 1 4 4 H 1.48493 * 109.47092 * 266.07241 * 3 2 1 5 5 H 1.48505 * 109.46992 * 26.07469 * 3 2 1 6 6 H 1.48507 * 109.47024 * 146.07100 * 3 2 1 7 7 C 1.37878 * 120.00551 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99701 * 353.91086 * 7 2 1 9 9 C 1.50699 * 120.00244 * 173.91440 * 7 2 1 10 10 O 1.42899 * 110.64177 * 325.51618 * 9 7 2 11 11 C 1.55154 * 110.71828 * 88.65913 * 9 7 2 12 12 C 1.54910 * 101.58287 * 154.04260 * 11 9 7 13 13 N 1.47423 * 104.83081 * 322.98685 * 12 11 9 14 14 C 1.34776 * 125.64895 * 204.09119 * 13 12 11 15 15 O 1.21521 * 120.00060 * 180.02562 * 14 13 12 16 16 C 1.48101 * 120.00096 * 0.29898 * 14 13 12 17 17 N 1.32775 * 119.73351 * 359.72491 * 16 14 13 18 18 C 1.31466 * 121.65139 * 179.97438 * 17 16 14 19 19 C 1.38634 * 120.93674 * 359.97438 * 18 17 16 20 20 C 1.38529 * 119.36501 * 0.02726 * 19 18 17 21 21 C 1.38770 * 118.48037 * 359.74514 * 20 19 18 22 22 Br 1.89099 * 120.48274 * 180.24855 * 21 20 19 23 23 C 1.47029 * 108.70335 * 24.35919 * 13 12 11 24 24 H 0.96996 * 120.00438 * 359.97438 * 1 2 3 25 25 H 0.96701 * 113.99697 * 297.55739 * 10 9 7 26 26 H 1.09002 * 111.00696 * 35.96386 * 11 9 7 27 27 H 1.09005 * 111.00265 * 272.11888 * 11 9 7 28 28 H 1.09000 * 110.36829 * 204.15069 * 12 11 9 29 29 H 1.09000 * 110.45852 * 81.87368 * 12 11 9 30 30 H 1.08008 * 119.53299 * 180.02562 * 18 17 16 31 31 H 1.07996 * 120.31874 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.76191 * 179.97438 * 20 19 18 33 33 H 1.08998 * 109.88191 * 118.13057 * 23 13 12 34 34 H 1.09004 * 109.87896 * 239.29429 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5796 1.9985 -1.3967 5 1 1.4074 2.6753 0.6154 6 1 3.5027 1.4657 0.7815 7 6 2.0046 -1.1940 -0.0005 8 1 1.4692 -2.1268 0.0983 9 6 3.5053 -1.1975 -0.1389 10 8 3.9346 -0.1378 -0.9960 11 6 4.1849 -1.0886 1.2516 12 6 5.5508 -1.7688 0.9843 13 7 5.2464 -2.8766 0.0605 14 6 5.9835 -3.9940 -0.0960 15 8 5.6358 -4.8450 -0.8907 16 6 7.2140 -4.1876 0.7051 17 7 7.5891 -3.2544 1.5719 18 6 8.6740 -3.3875 2.3025 19 6 9.4721 -4.5158 2.1942 20 6 9.1186 -5.5150 1.3022 21 6 7.9659 -5.3505 0.5472 22 35 7.4265 -6.6819 -0.6825 23 6 4.0088 -2.5577 -0.6665 24 1 -0.4850 0.8400 0.0004 25 1 3.6060 -0.2076 -1.9027 26 1 3.6185 -1.6331 2.0071 27 1 4.3175 -0.0461 1.5411 28 1 5.9710 -2.1541 1.9133 29 1 6.2419 -1.0658 0.5190 30 1 8.9469 -2.6070 2.9974 31 1 10.3610 -4.6150 2.7995 32 1 9.7241 -6.4033 1.1993 33 1 4.2135 -2.4903 -1.7350 34 1 3.2596 -3.3267 -0.4782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853063.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:59 Heat of formation + Delta-G solvation = -9.171051 kcal Electronic energy + Delta-G solvation = -21643.340117 eV Core-core repulsion = 18202.929272 eV Total energy + Delta-G solvation = -3440.410845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81586 -39.13873 -37.52362 -34.84171 -33.33745 -32.37015 -32.29715 -30.30750 -29.59839 -28.28380 -25.84176 -24.37589 -23.32797 -22.32625 -20.15652 -19.58347 -17.69034 -17.34645 -16.98761 -16.09660 -15.53908 -15.40131 -15.16493 -14.73485 -14.46699 -14.19365 -13.66163 -13.42855 -13.08944 -12.72910 -12.54443 -12.17628 -12.07148 -11.62115 -11.47870 -11.44878 -11.00609 -10.91494 -10.47192 -10.30094 -10.15874 -10.05522 -9.75934 -9.18581 -9.17763 -8.76288 -8.62652 -8.49619 -8.07662 -6.17982 -4.29768 0.30293 0.72121 1.44110 2.77348 3.18362 3.46119 3.52442 3.64970 3.68199 4.00212 4.36053 4.47337 4.49954 4.53300 4.89523 5.00168 5.08149 5.22528 5.43006 5.50550 5.56514 5.85245 5.90191 6.03584 6.10908 6.32875 6.53271 6.66238 6.77473 6.84943 7.13391 7.39530 7.47017 7.91568 8.13965 8.40575 8.65654 8.83668 9.43109 10.91093 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.003725 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.757121 B = 7514.133929 C = 8415.417530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.945 3.055 4 H -0.291 1.291 5 H -0.325 1.325 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.218 3.782 10 O -0.564 6.564 11 C -0.126 4.126 12 C 0.101 3.899 13 N -0.585 5.585 14 C 0.560 3.440 15 O -0.517 6.517 16 C 0.119 3.881 17 N -0.441 5.441 18 C 0.106 3.894 19 C -0.152 4.152 20 C -0.056 4.056 21 C -0.103 4.103 22 Br 0.006 6.994 23 C 0.093 3.907 24 H 0.267 0.733 25 H 0.372 0.628 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.169 0.831 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.062 0.938 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.416 -10.489 4.081 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.129 4.129 3 Si 0.779 3.221 4 H -0.218 1.218 5 H -0.256 1.256 6 H -0.192 1.192 7 C -0.590 4.590 8 H 0.098 0.902 9 C 0.178 3.822 10 O -0.371 6.371 11 C -0.164 4.164 12 C -0.021 4.021 13 N -0.316 5.316 14 C 0.345 3.655 15 O -0.393 6.393 16 C -0.022 4.022 17 N -0.153 5.153 18 C -0.053 4.053 19 C -0.173 4.173 20 C -0.084 4.084 21 C -0.186 4.186 22 Br 0.092 6.908 23 C -0.029 4.029 24 H 0.076 0.924 25 H 0.220 0.780 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.186 0.814 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.080 0.920 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.632 -10.497 3.771 23.454 hybrid contribution 0.793 0.259 -0.212 0.861 sum 21.425 -10.239 3.560 24.011 Atomic orbital electron populations 1.69963 1.06835 1.27788 1.47746 1.25097 0.94849 1.00395 0.92605 0.85801 0.77981 0.80127 0.78156 1.21826 1.25586 1.19237 1.21191 0.88422 0.95437 1.53943 0.90167 1.20134 0.93956 0.81221 0.86896 1.86134 1.76585 1.49863 1.24558 1.23192 0.93778 1.01163 0.98314 1.22736 0.97909 0.87734 0.93753 1.48457 1.24931 1.17964 1.40241 1.17417 0.82652 0.82093 0.83318 1.90953 1.70180 1.41564 1.36639 1.21201 0.95940 0.90028 0.94987 1.68143 1.14959 1.27872 1.04294 1.23122 0.89476 0.96687 0.96027 1.22388 1.01491 0.94464 0.98939 1.21606 0.93939 0.99612 0.93223 1.22959 0.98478 0.96773 1.00387 1.96811 1.91544 1.46070 1.56390 1.22959 0.84239 1.00159 0.95574 0.92400 0.77997 0.89909 0.89941 0.88901 0.91909 0.81355 0.83507 0.83326 0.92016 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.94 22.98 24.82 -169.99 -4.22 18.76 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.32 -8.12 7.11 56.52 0.40 -7.72 16 6 H -0.27 -6.28 5.20 56.52 0.29 -5.99 16 7 C -0.55 -14.68 8.82 -34.44 -0.30 -14.98 16 8 H 0.08 2.34 7.81 -52.48 -0.41 1.93 16 9 C 0.22 4.85 0.68 -89.93 -0.06 4.79 16 10 O -0.56 -12.17 8.74 -35.23 -0.31 -12.48 16 11 C -0.13 -2.54 5.88 -24.58 -0.14 -2.69 16 12 C 0.10 1.78 5.93 -2.53 -0.02 1.77 16 13 N -0.58 -11.18 3.33 -171.52 -0.57 -11.75 16 14 C 0.56 10.40 7.83 -12.21 -0.10 10.30 16 15 O -0.52 -10.45 13.78 5.35 0.07 -10.37 16 16 C 0.12 1.81 6.72 -82.99 -0.56 1.25 16 17 N -0.44 -5.88 6.59 -9.78 -0.06 -5.95 16 18 C 0.11 0.97 11.18 -17.56 -0.20 0.77 16 19 C -0.15 -1.11 10.11 -39.33 -0.40 -1.51 16 20 C -0.06 -0.51 9.94 -39.28 -0.39 -0.90 16 21 C -0.10 -1.34 6.28 -38.96 -0.24 -1.58 16 22 Br 0.01 0.08 30.41 -68.01 -2.07 -1.99 16 23 C 0.09 1.92 6.22 -3.05 -0.02 1.90 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.37 7.16 8.97 45.56 0.41 7.57 16 26 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 27 H 0.08 1.69 6.24 -51.93 -0.32 1.36 16 28 H 0.09 1.48 5.87 -51.93 -0.31 1.18 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.17 0.97 8.06 -52.48 -0.42 0.54 16 31 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 34 H 0.08 1.70 7.66 -51.93 -0.40 1.30 16 LS Contribution 299.35 15.07 4.51 4.51 Total: -1.00 -32.36 299.35 -7.19 -39.55 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -2.80 Total: 4.10 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.52 Total: 1.12 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.14 Total: -43.21 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.23 Total: -22.85 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.22 Total: 18.76 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -2.07 Total: -1.99 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.36 -7.19 -39.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853063.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.383 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds