Wall clock time and date at job start Sat Apr 11 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.39054 * 111.00259 * 172.60785 * 14 13 12 16 16 C 1.39437 * 120.14651 * 304.02552 * 15 14 13 17 17 C 1.38671 * 117.88963 * 179.78220 * 16 15 14 18 18 Br 1.89098 * 120.99287 * 180.23305 * 17 16 15 19 19 C 1.38938 * 118.01322 * 0.48256 * 17 16 15 20 20 N 1.31756 * 120.00023 * 359.74862 * 19 17 16 21 21 N 1.28350 * 122.29584 * 359.97438 * 20 19 17 22 22 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 23 23 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 24 24 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 26 26 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 27 27 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 28 28 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 29 29 H 1.07995 * 121.05833 * 0.02562 * 16 15 14 30 30 H 1.08001 * 119.99842 * 179.77175 * 19 17 16 31 31 H 1.08994 * 109.49159 * 303.15220 * 22 14 13 32 32 H 1.08999 * 109.51460 * 183.07675 * 22 14 13 33 33 H 1.08999 * 109.63197 * 350.89564 * 23 11 9 34 34 H 1.09008 * 109.62635 * 111.48013 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7555 -6.9745 1.5157 16 6 5.1262 -7.2300 1.5264 17 6 5.5941 -8.2241 2.3724 18 35 7.4368 -8.6389 2.4619 19 6 4.6679 -8.9099 3.1485 20 7 3.3885 -8.6048 3.0706 21 7 2.9496 -7.6822 2.2937 22 6 1.7771 -5.8907 0.8322 23 6 1.2249 -4.9226 -0.2195 24 1 -0.4850 0.8400 0.0004 25 1 3.7736 -3.9711 -1.0920 26 1 3.8007 -2.6840 0.1423 27 1 3.6077 -4.3397 1.9417 28 1 4.9637 -4.8055 0.8864 29 1 5.8025 -6.6689 0.8986 30 1 4.9967 -9.6928 3.8158 31 1 1.5327 -5.5231 1.8288 32 1 1.3329 -6.8757 0.6888 33 1 0.1612 -4.7606 -0.0453 34 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596292436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:08 Heat of formation + Delta-G solvation = 29.524858 kcal Electronic energy + Delta-G solvation = -21150.105542 eV Core-core repulsion = 17743.665429 eV Total energy + Delta-G solvation = -3406.440113 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.46789 -40.44597 -38.58045 -35.63325 -35.09841 -34.63497 -32.56881 -32.15862 -31.33818 -28.96165 -27.56048 -26.15014 -24.42130 -24.13216 -22.62552 -20.79253 -19.08910 -18.70552 -18.23492 -17.84226 -17.25877 -16.63935 -16.23379 -15.91973 -15.83116 -15.76215 -15.12691 -15.02613 -14.49367 -14.38204 -13.59173 -13.39229 -13.15439 -12.91855 -12.86373 -12.70506 -12.63749 -12.32113 -12.21606 -12.06496 -11.99136 -11.81288 -11.53693 -10.90852 -10.84691 -10.65337 -9.80993 -9.70672 -9.14311 -8.28710 -6.84240 -0.61454 -0.27194 0.10899 1.42063 1.45179 1.56826 2.00319 2.24562 2.34788 2.46957 2.79346 3.02696 3.26512 3.47721 3.57620 3.66302 3.88697 3.91947 3.96928 4.21446 4.30101 4.38312 4.46996 4.54550 4.70782 4.73191 4.84549 4.88321 5.09219 5.37564 5.49359 5.66834 5.74450 6.11063 6.34410 6.88086 7.39667 7.50699 8.45576 8.67233 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.002744 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.175450 B =10201.140154 C =11156.058587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.280 1.280 5 H -0.253 1.253 6 H -0.250 1.250 7 C -0.567 4.567 8 H 0.100 0.900 9 C 0.541 3.459 10 O -0.632 6.632 11 N -0.650 5.650 12 C 0.124 3.876 13 C 0.050 3.950 14 N -0.461 5.461 15 C 0.259 3.741 16 C -0.095 4.095 17 C -0.073 4.073 18 Br 0.017 6.983 19 C 0.044 3.956 20 N -0.239 5.239 21 N -0.307 5.307 22 C 0.070 3.930 23 C 0.124 3.876 24 H 0.273 0.727 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.037 0.963 28 H 0.131 0.869 29 H 0.188 0.812 30 H 0.208 0.792 31 H 0.032 0.968 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.462 -16.780 4.274 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.205 1.205 5 H -0.177 1.177 6 H -0.174 1.174 7 C -0.603 4.603 8 H 0.118 0.882 9 C 0.347 3.653 10 O -0.520 6.520 11 N -0.387 5.387 12 C 0.001 3.999 13 C -0.077 4.077 14 N -0.179 5.179 15 C 0.019 3.981 16 C -0.128 4.128 17 C -0.164 4.164 18 Br 0.102 6.898 19 C -0.126 4.126 20 N -0.078 5.078 21 N -0.154 5.154 22 C -0.058 4.058 23 C 0.000 4.000 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.055 0.945 28 H 0.148 0.852 29 H 0.205 0.795 30 H 0.225 0.775 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.815 -17.209 4.350 26.602 hybrid contribution 0.416 1.096 0.157 1.183 sum 20.231 -16.112 4.506 26.253 Atomic orbital electron populations 1.70193 1.09695 1.28991 1.36510 1.27023 0.95458 1.05081 0.91183 0.85092 0.78213 0.74679 0.80490 1.20460 1.17669 1.17380 1.21482 0.94994 0.89450 1.54393 0.88206 1.18715 0.86585 0.84101 0.75861 1.90552 1.16790 1.87276 1.57344 1.48191 1.06733 1.05338 1.78468 1.21845 0.79976 0.99532 0.98545 1.22942 1.00842 0.85422 0.98449 1.59047 1.06994 1.06136 1.45720 1.21714 0.91690 0.95147 0.89577 1.22225 0.94597 0.97442 0.98567 1.23169 0.95069 0.98585 0.99569 1.96881 1.01945 1.93192 1.97787 1.24745 0.89122 1.00155 0.98537 1.72879 1.14948 1.08002 1.11997 1.73140 1.32766 1.05490 1.03984 1.22236 0.85171 1.00540 0.97807 1.21324 0.96866 0.83800 0.98045 0.91666 0.90372 0.88094 0.94452 0.85156 0.79476 0.77492 0.94984 0.88313 0.91961 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.11 11.84 21.83 0.26 -49.85 16 2 C 0.03 1.50 5.50 85.30 0.47 1.97 16 3 Si 1.00 39.44 29.56 68.60 2.03 41.47 16 4 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 6 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.57 -30.75 8.86 24.83 0.22 -30.53 16 8 H 0.10 4.65 5.74 -2.91 -0.02 4.64 16 9 C 0.54 30.88 7.63 86.36 0.66 31.54 16 10 O -0.63 -42.43 14.49 -4.31 -0.06 -42.49 16 11 N -0.65 -28.80 3.00 -822.12 -2.47 -31.27 16 12 C 0.12 4.03 6.50 86.50 0.56 4.59 16 13 C 0.05 1.29 5.44 86.54 0.47 1.76 16 14 N -0.46 -12.83 4.66 -699.58 -3.26 -16.08 16 15 C 0.26 6.65 6.47 133.09 0.86 7.51 16 16 C -0.10 -1.74 9.07 22.66 0.21 -1.54 16 17 C -0.07 -1.18 6.28 22.54 0.14 -1.04 16 18 Br 0.02 0.20 33.79 -20.37 -0.69 -0.49 16 19 C 0.04 0.81 11.10 84.87 0.94 1.75 16 20 N -0.24 -6.31 11.49 -57.14 -0.66 -6.96 16 21 N -0.31 -9.15 9.86 -55.12 -0.54 -9.69 16 22 C 0.07 2.37 4.84 86.38 0.42 2.79 16 23 C 0.12 4.91 6.61 86.35 0.57 5.48 16 24 H 0.27 15.15 8.29 -92.71 -0.77 14.38 16 25 H 0.08 2.22 8.14 -2.38 -0.02 2.21 16 26 H 0.10 3.32 5.46 -2.39 -0.01 3.31 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.13 2.21 6.70 -2.39 -0.02 2.19 16 29 H 0.19 2.35 7.23 -2.91 -0.02 2.33 16 30 H 0.21 2.30 8.06 -2.91 -0.02 2.27 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.10 3.13 7.66 -2.39 -0.02 3.11 16 33 H 0.06 2.87 7.04 -2.39 -0.02 2.85 16 34 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -77.59 307.04 1.28 -76.32 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.15 Total: 14.78 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 5.52 Total: 24.27 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -6.67 Total: -113.86 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -0.06 Total: -42.49 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Atomic # 35 Polarization: 0.20 SS G_CDS: -0.69 Total: -0.49 kcal Total: -77.59 1.28 -76.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596292436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.841 kcal (2) G-P(sol) polarization free energy of solvation -77.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds