Wall clock time and date at job start Sat Apr 11 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31588 * 122.22914 * 2 1 4 4 C 1.29968 * 117.13048 * 179.97438 * 3 2 1 5 5 N 1.38776 * 125.36069 * 180.02562 * 4 3 2 6 6 C 1.34784 * 119.99888 * 180.02562 * 5 4 3 7 7 O 1.21588 * 119.99858 * 359.97438 * 6 5 4 8 8 C 1.47662 * 119.99847 * 179.72788 * 6 5 4 9 9 C 1.41078 * 125.98289 * 179.71887 * 8 6 5 10 10 C 1.35589 * 107.79978 * 179.82586 * 9 8 6 11 11 O 1.35767 * 126.08144 * 180.15822 * 10 9 8 12 12 N 1.35849 * 107.83603 * 0.42422 * 10 9 8 13 13 C 1.46496 * 125.94696 * 179.75206 * 12 10 9 14 14 N 1.31884 * 125.98983 * 0.02562 * 8 6 5 15 15 S 1.76136 * 109.27035 * 0.26855 * 4 3 2 16 16 C 1.34661 * 122.22757 * 179.97438 * 2 1 3 17 17 S 1.76196 * 125.93139 * 0.02562 * 16 2 1 18 18 C 1.76199 * 100.00043 * 179.97438 * 17 16 2 19 19 H 1.08002 * 120.00336 * 359.97438 * 18 17 16 20 20 C 1.38434 * 120.00029 * 179.97438 * 18 17 16 21 21 N 1.31805 * 119.99890 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99662 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46951 * 90.00141 * 22 20 18 24 24 H 1.48501 * 109.46832 * 210.00067 * 22 20 18 25 25 H 1.48502 * 109.47415 * 329.99886 * 22 20 18 26 26 H 1.08992 * 109.47337 * 90.02116 * 1 2 3 27 27 H 1.09000 * 109.47073 * 210.02573 * 1 2 3 28 28 H 1.09004 * 109.47137 * 330.01649 * 1 2 3 29 29 H 0.97005 * 120.00265 * 0.02562 * 5 4 3 30 30 H 1.08002 * 126.10416 * 359.97438 * 9 8 6 31 31 H 0.96703 * 114.00110 * 270.31313 * 11 10 9 32 32 H 1.09001 * 109.46897 * 269.99780 * 13 12 10 33 33 H 1.08992 * 109.47306 * 29.99893 * 13 12 10 34 34 H 1.09000 * 109.46888 * 150.00712 * 13 12 10 35 35 H 0.97006 * 120.00104 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5033 0.9976 0.0005 5 7 4.4039 2.0535 0.0011 6 6 5.7293 1.8088 0.0011 7 8 6.1359 0.6629 0.0010 8 6 6.6875 2.9323 -0.0043 9 6 8.0940 2.8222 0.0006 10 6 8.6079 4.0769 -0.0110 11 8 9.9264 4.4008 -0.0138 12 7 7.5690 4.9522 -0.0134 13 6 7.6754 6.4132 -0.0197 14 7 6.3785 4.2144 -0.0090 15 16 3.9346 -0.7101 -0.0067 16 6 2.2252 -1.1391 0.0005 17 16 1.5696 -2.7746 0.0006 18 6 3.0665 -3.7042 0.0006 19 1 4.0187 -3.1946 0.0001 20 6 3.0220 -5.0878 0.0012 21 7 1.8599 -5.7098 0.0013 22 14 4.6090 -6.0732 0.0004 23 1 5.0304 -6.3338 1.4003 24 1 4.3893 -7.3647 -0.6989 25 1 5.6687 -5.3046 -0.7007 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5136 29 1 4.0794 2.9677 0.0015 30 1 8.6603 1.9027 0.0094 31 1 10.3094 4.4983 0.8687 32 1 7.7032 6.7800 1.0063 33 1 8.5887 6.7088 -0.5360 34 1 6.8134 6.8380 -0.5341 35 1 1.8287 -6.6794 0.0020 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597047606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:10 Heat of formation + Delta-G solvation = 49.726584 kcal Electronic energy + Delta-G solvation = -23224.610414 eV Core-core repulsion = 19478.270577 eV Total energy + Delta-G solvation = -3746.339837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.045 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.85752 -39.86700 -38.48160 -37.69649 -34.79073 -33.72840 -32.80002 -30.62749 -29.68624 -27.82527 -27.04462 -25.74650 -24.69206 -22.41122 -21.79820 -20.85629 -19.77325 -18.90040 -17.95613 -17.48356 -17.01152 -16.50472 -15.93152 -15.70943 -15.28792 -15.08064 -14.90576 -14.70713 -14.48552 -13.97489 -13.93469 -13.18698 -13.17231 -12.96794 -12.65743 -12.23786 -12.06845 -11.85825 -11.36277 -11.24399 -11.23961 -11.06072 -10.89418 -10.57068 -10.24070 -10.02599 -9.79319 -9.50982 -9.10574 -9.05340 -8.72619 -8.63867 -7.77897 -6.57903 -6.47845 -4.25301 0.81288 1.36668 1.66958 1.79133 1.90109 2.53031 2.78765 3.03228 3.09974 3.13046 3.19539 3.36447 3.54881 3.69264 3.89567 4.00544 4.51237 4.64032 4.84901 4.92880 4.99110 5.03368 5.05900 5.25282 5.36889 5.92659 5.96130 6.00882 6.15053 6.26689 6.46598 6.49897 6.79829 6.97295 7.00542 7.24420 7.35621 7.91222 8.06735 8.54169 8.90747 10.47798 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.002902 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.180863 B = 9645.142021 C =11403.310338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.020 3.980 3 N -0.471 5.471 4 C 0.185 3.815 5 N -0.599 5.599 6 C 0.592 3.408 7 O -0.489 6.489 8 C 0.051 3.949 9 C -0.215 4.215 10 C 0.255 3.745 11 O -0.460 6.460 12 N -0.368 5.368 13 C 0.094 3.906 14 N -0.237 5.237 15 S 0.203 5.797 16 C -0.250 4.250 17 S 0.151 5.849 18 C -0.556 4.556 19 H 0.090 0.910 20 C 0.082 3.918 21 N -0.863 5.863 22 Si 0.924 3.076 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.264 1.264 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.421 0.579 30 H 0.170 0.830 31 H 0.401 0.599 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.407 21.203 1.630 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.192 5.192 4 C -0.185 4.185 5 N -0.248 5.248 6 C 0.375 3.625 7 O -0.360 6.360 8 C -0.115 4.115 9 C -0.245 4.245 10 C 0.088 3.912 11 O -0.264 6.264 12 N -0.164 5.164 13 C -0.047 4.047 14 N -0.069 5.069 15 S 0.447 5.553 16 C -0.486 4.486 17 S 0.402 5.598 18 C -0.705 4.705 19 H 0.107 0.893 20 C -0.129 4.129 21 N -0.496 5.496 22 Si 0.749 3.251 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.188 1.188 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.259 0.741 30 H 0.187 0.813 31 H 0.259 0.741 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.326 20.487 1.007 22.965 hybrid contribution 2.033 0.150 0.513 2.102 sum 12.359 20.638 1.519 24.103 Atomic orbital electron populations 1.20121 0.87999 1.02138 1.01825 1.19039 0.96715 0.84515 1.11985 1.65803 1.02754 1.32420 1.18262 1.23666 0.89847 0.92635 1.12384 1.42104 1.03888 1.08687 1.70078 1.16861 0.80548 0.87257 0.77868 1.90828 1.76997 1.20296 1.47876 1.21442 0.94053 0.91338 1.04675 1.21181 0.92635 0.97186 1.13475 1.18648 0.81091 0.88014 1.03487 1.84908 1.15877 1.91265 1.34327 1.49278 1.03314 1.07205 1.56563 1.21995 1.04982 0.73853 1.03857 1.77752 1.03756 1.03049 1.22356 1.85812 1.01809 0.95260 1.72420 1.28776 1.01201 1.06760 1.11905 1.83069 1.11015 0.84353 1.81360 1.23278 0.93617 0.94042 1.59538 0.89260 1.25030 0.98277 0.96675 0.92913 1.70014 1.24407 1.10316 1.44872 0.86032 0.81294 0.78758 0.79016 1.19621 1.20317 1.18807 0.91840 0.91022 0.91900 0.74095 0.81278 0.74139 0.90210 0.88845 0.88567 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.01 0.36 -0.72 16 2 C 0.02 0.43 6.73 -83.96 -0.57 -0.14 16 3 N -0.47 -9.71 10.55 -9.81 -0.10 -9.81 16 4 C 0.19 3.70 8.39 -87.29 -0.73 2.96 16 5 N -0.60 -9.75 5.39 -12.71 -0.07 -9.82 16 6 C 0.59 9.53 7.78 -12.41 -0.10 9.43 16 7 O -0.49 -9.29 14.41 5.29 0.08 -9.22 16 8 C 0.05 0.67 7.09 -82.92 -0.59 0.08 16 9 C -0.21 -2.44 10.59 -39.45 -0.42 -2.86 16 10 C 0.26 2.31 7.97 -16.72 -0.13 2.18 16 11 O -0.46 -2.83 13.58 -19.01 -0.26 -3.09 16 12 N -0.37 -3.29 4.04 -68.19 -0.28 -3.56 16 13 C 0.09 0.41 11.42 59.84 0.68 1.09 16 14 N -0.24 -2.77 12.26 33.34 0.41 -2.37 16 15 S 0.20 4.54 18.34 -107.50 -1.97 2.57 16 16 C -0.25 -5.81 6.67 29.47 0.20 -5.61 16 17 S 0.15 3.82 20.74 -107.50 -2.23 1.59 16 18 C -0.56 -15.18 9.26 30.80 0.29 -14.89 16 19 H 0.09 2.42 5.97 -52.49 -0.31 2.11 16 20 C 0.08 2.20 5.49 -17.49 -0.10 2.10 16 21 N -0.86 -23.82 13.22 55.47 0.73 -23.09 16 22 Si 0.92 20.74 29.55 -169.99 -5.02 15.72 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.42 5.79 8.52 -40.82 -0.35 5.44 16 30 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.40 0.38 9.06 45.56 0.41 0.80 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.28 7.09 8.32 -40.82 -0.34 6.75 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -33.90 342.84 -6.95 -40.85 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -2.30 Total: 1.43 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.10 Total: -6.37 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.70 Total: -48.64 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.18 Total: -12.30 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 8.36 SS G_CDS: -4.20 Total: 4.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.90 -6.95 -40.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597047606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.575 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds