Wall clock time and date at job start Sat Apr 11 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00492 * 2 1 4 4 H 1.48492 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46773 * 299.99745 * 3 2 1 6 6 H 1.48505 * 109.47207 * 59.99360 * 3 2 1 7 7 C 1.37880 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99857 * 175.51742 * 7 2 1 9 9 C 1.50700 * 120.00169 * 355.79267 * 7 2 1 10 10 C 1.52997 * 115.54987 * 35.31616 * 9 7 2 11 11 N 1.46500 * 109.47091 * 54.23119 * 10 9 7 12 12 C 1.34774 * 119.99728 * 184.99079 * 11 10 9 13 13 O 1.21589 * 120.00225 * 5.07272 * 12 11 10 14 14 C 1.47530 * 119.99728 * 185.06837 * 12 11 10 15 15 C 1.39980 * 120.59552 * 5.21768 * 14 12 11 16 16 C 1.38416 * 118.34647 * 179.97438 * 15 14 12 17 17 Br 1.89092 * 120.28309 * 179.97438 * 16 15 14 18 18 C 1.38433 * 119.43267 * 359.97438 * 16 15 14 19 19 N 1.31883 * 121.17551 * 0.02562 * 18 16 15 20 20 C 1.32231 * 121.81129 * 359.71807 * 19 18 16 21 21 O 1.35434 * 119.79199 * 180.27314 * 20 19 18 22 22 C 1.53000 * 117.49641 * 249.64469 * 9 7 2 23 23 C 1.53008 * 117.49733 * 180.98515 * 9 7 2 24 24 H 0.96998 * 119.99452 * 5.00571 * 1 2 3 25 25 H 1.09001 * 109.46954 * 174.22946 * 10 9 7 26 26 H 1.08996 * 109.47334 * 294.23270 * 10 9 7 27 27 H 0.97006 * 120.00058 * 5.00073 * 11 10 9 28 28 H 1.08011 * 120.82852 * 359.95374 * 15 14 12 29 29 H 1.08002 * 119.41384 * 180.02562 * 18 16 15 30 30 H 0.96707 * 113.99822 * 270.27075 * 21 20 19 31 31 H 1.08995 * 117.50093 * 0.02562 * 22 9 7 32 32 H 1.09007 * 117.49784 * 145.02556 * 22 9 7 33 33 H 1.08999 * 117.49424 * 214.97733 * 23 9 7 34 34 H 1.08990 * 117.49779 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0820 -1.1957 -0.0726 9 6 1.2539 -2.4974 0.0969 10 6 -0.0995 -2.5336 -0.6157 11 7 0.0749 -2.1389 -2.0157 12 6 -1.0008 -2.0003 -2.8157 13 8 -2.1201 -2.1123 -2.3544 14 6 -0.8200 -1.7126 -4.2514 15 6 0.4600 -1.6886 -4.8176 16 6 0.5756 -1.4142 -6.1693 17 35 2.2782 -1.3672 -6.9905 18 6 -0.5659 -1.1745 -6.9149 19 7 -1.7621 -1.2024 -6.3601 20 6 -1.9283 -1.4643 -5.0747 21 8 -3.1761 -1.4879 -4.5486 22 6 1.3912 -3.2974 1.3938 23 6 2.0771 -3.7870 0.1158 24 1 -0.4849 0.8369 -0.0733 25 1 -0.5067 -3.5438 -0.5711 26 1 -0.7864 -1.8431 -0.1264 27 1 0.9646 -1.9774 -2.3668 28 1 1.3356 -1.8790 -4.2146 29 1 -0.4754 -0.9609 -7.9697 30 1 -3.4789 -0.6318 -4.2161 31 1 2.0240 -2.8810 2.1774 32 1 0.5173 -3.8500 1.7392 33 1 1.6542 -4.6613 -0.3790 34 1 3.1614 -3.6927 0.0582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598698741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:12 Heat of formation + Delta-G solvation = -5.303925 kcal Electronic energy + Delta-G solvation = -21464.424714 eV Core-core repulsion = 18024.181560 eV Total energy + Delta-G solvation = -3440.243153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77290 -38.50494 -37.14995 -36.62654 -33.51325 -32.83343 -32.27999 -31.74243 -29.10500 -26.38572 -25.54960 -24.33244 -22.97932 -21.33382 -19.96569 -19.39549 -18.85114 -17.43708 -17.16591 -16.28634 -15.89988 -14.99972 -14.85613 -14.74819 -14.17929 -14.01242 -13.66129 -13.46712 -13.03703 -12.87238 -12.37398 -11.84150 -11.72716 -11.54924 -11.31434 -11.15937 -10.78253 -10.59992 -10.58268 -10.33066 -9.95330 -9.89872 -9.78114 -9.17466 -9.01234 -8.92781 -8.87739 -8.37344 -7.95495 -6.07566 -4.27871 0.45666 0.79320 1.30407 3.01613 3.14434 3.25712 3.27778 3.46638 3.86187 3.93331 4.22615 4.42544 4.57855 4.70524 4.89414 5.03312 5.38765 5.45601 5.50740 5.74001 5.94258 6.07712 6.23007 6.45138 6.54466 6.62988 6.82533 7.00584 7.18955 7.41119 7.47607 7.53947 7.66014 7.89081 8.22144 8.40247 8.73842 8.99992 9.36091 10.81256 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.004638 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.780769 B = 6035.286810 C = 6928.291899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.497 4.497 8 H 0.062 0.938 9 C 0.033 3.967 10 C 0.164 3.836 11 N -0.672 5.672 12 C 0.550 3.450 13 O -0.532 6.532 14 C -0.179 4.179 15 C -0.002 4.002 16 C -0.168 4.168 17 Br -0.029 7.029 18 C 0.170 3.830 19 N -0.501 5.501 20 C 0.377 3.623 21 O -0.455 6.455 22 C -0.197 4.197 23 C -0.212 4.212 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.121 0.879 27 H 0.395 0.605 28 H 0.156 0.844 29 H 0.171 0.829 30 H 0.408 0.592 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -1.189 -14.323 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.534 4.534 8 H 0.080 0.920 9 C 0.033 3.967 10 C 0.042 3.958 11 N -0.319 5.319 12 C 0.333 3.667 13 O -0.411 6.411 14 C -0.187 4.187 15 C -0.030 4.030 16 C -0.250 4.250 17 Br 0.056 6.944 18 C 0.010 3.990 19 N -0.220 5.220 20 C 0.198 3.802 21 O -0.263 6.263 22 C -0.236 4.236 23 C -0.250 4.250 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.138 0.862 27 H 0.230 0.770 28 H 0.173 0.827 29 H 0.188 0.812 30 H 0.269 0.731 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.528 -1.560 -14.760 14.921 hybrid contribution 1.332 1.260 0.697 1.962 sum 2.861 -0.300 -14.064 14.355 Atomic orbital electron populations 1.69864 1.05644 1.26617 1.48055 1.25006 0.94861 0.99094 0.94091 0.86536 0.80177 0.83551 0.77830 1.19656 1.20969 1.20794 1.20546 0.92813 0.88482 1.51598 0.91983 1.19255 0.92835 0.90017 0.94638 1.21144 0.98423 0.96842 0.79410 1.45547 1.07958 1.66441 1.11958 1.17499 0.85760 0.79267 0.84142 1.90768 1.23689 1.51372 1.75238 1.21560 0.93014 1.06970 0.97109 1.21847 0.97721 0.90504 0.92905 1.22803 0.93734 1.11855 0.96610 1.96755 1.19623 1.97793 1.80278 1.22695 0.84941 0.91413 0.99963 1.67452 1.25725 1.16123 1.12719 1.19302 0.85200 0.89313 0.86430 1.84704 1.26590 1.36685 1.78282 1.22939 1.01709 1.06434 0.92475 1.22971 0.98482 0.99930 1.03594 0.92713 0.96089 0.86189 0.77026 0.82690 0.81227 0.73141 0.90160 0.91395 0.91300 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.15 10.11 55.43 0.56 -21.59 16 2 C 0.07 1.82 5.31 -17.82 -0.09 1.72 16 3 Si 0.89 19.52 29.54 -169.99 -5.02 14.50 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.50 -12.07 8.43 -34.44 -0.29 -12.36 16 8 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 9 C 0.03 0.75 2.04 -155.66 -0.32 0.43 16 10 C 0.16 3.71 4.62 -4.04 -0.02 3.69 16 11 N -0.67 -13.67 4.97 -61.35 -0.30 -13.97 16 12 C 0.55 11.07 7.76 -12.47 -0.10 10.98 16 13 O -0.53 -12.27 15.19 -16.43 -0.25 -12.52 16 14 C -0.18 -2.97 5.90 -104.69 -0.62 -3.59 16 15 C 0.00 -0.03 9.37 -38.86 -0.36 -0.39 16 16 C -0.17 -2.05 6.24 -39.44 -0.25 -2.30 16 17 Br -0.03 -0.30 33.72 -68.01 -2.29 -2.59 16 18 C 0.17 2.02 10.92 -17.46 -0.19 1.83 16 19 N -0.50 -7.20 10.37 -12.96 -0.13 -7.34 16 20 C 0.38 6.04 7.77 -16.61 -0.13 5.91 16 21 O -0.45 -7.29 11.67 -39.71 -0.46 -7.75 16 22 C -0.20 -4.13 9.96 -26.69 -0.27 -4.40 16 23 C -0.21 -4.21 9.92 -26.69 -0.26 -4.48 16 24 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 25 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.12 3.11 5.89 -51.93 -0.31 2.81 16 27 H 0.40 7.50 6.28 -40.82 -0.26 7.24 16 28 H 0.16 2.02 6.59 -52.48 -0.35 1.68 16 29 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.41 4.94 9.06 45.56 0.41 5.35 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -28.46 317.80 -8.59 -37.05 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -2.57 Total: 12.37 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.90 Total: -2.95 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.12 Total: -42.90 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.71 Total: -20.27 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.29 Total: -2.59 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.46 -8.59 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598698741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.748 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds