Wall clock time and date at job start Sat Apr 11 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00492 * 2 1 4 4 H 1.48492 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46773 * 299.99745 * 3 2 1 6 6 H 1.48505 * 109.47207 * 59.99360 * 3 2 1 7 7 C 1.37880 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99857 * 175.51742 * 7 2 1 9 9 C 1.50700 * 120.00169 * 355.79267 * 7 2 1 10 10 C 1.52997 * 115.54987 * 35.31616 * 9 7 2 11 11 N 1.46500 * 109.47091 * 54.23119 * 10 9 7 12 12 C 1.34774 * 119.99728 * 184.99079 * 11 10 9 13 13 O 1.21589 * 120.00225 * 5.07272 * 12 11 10 14 14 C 1.47530 * 119.99728 * 185.06837 * 12 11 10 15 15 C 1.39980 * 120.59552 * 5.21768 * 14 12 11 16 16 C 1.38416 * 118.34647 * 179.97438 * 15 14 12 17 17 Br 1.89092 * 120.28309 * 179.97438 * 16 15 14 18 18 C 1.38433 * 119.43267 * 359.97438 * 16 15 14 19 19 N 1.31883 * 121.17551 * 0.02562 * 18 16 15 20 20 C 1.32231 * 121.81129 * 359.71807 * 19 18 16 21 21 O 1.35434 * 119.79199 * 180.27314 * 20 19 18 22 22 C 1.53000 * 117.49641 * 249.64469 * 9 7 2 23 23 C 1.53008 * 117.49733 * 180.98515 * 9 7 2 24 24 H 0.96998 * 119.99452 * 5.00571 * 1 2 3 25 25 H 1.09001 * 109.46954 * 174.22946 * 10 9 7 26 26 H 1.08996 * 109.47334 * 294.23270 * 10 9 7 27 27 H 0.97006 * 120.00058 * 5.00073 * 11 10 9 28 28 H 1.08011 * 120.82852 * 359.95374 * 15 14 12 29 29 H 1.08002 * 119.41384 * 180.02562 * 18 16 15 30 30 H 0.96707 * 113.99822 * 270.27075 * 21 20 19 31 31 H 1.08995 * 117.50093 * 0.02562 * 22 9 7 32 32 H 1.09007 * 117.49784 * 145.02556 * 22 9 7 33 33 H 1.08999 * 117.49424 * 214.97733 * 23 9 7 34 34 H 1.08990 * 117.49779 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0820 -1.1957 -0.0726 9 6 1.2539 -2.4974 0.0969 10 6 -0.0995 -2.5336 -0.6157 11 7 0.0749 -2.1389 -2.0157 12 6 -1.0008 -2.0003 -2.8157 13 8 -2.1201 -2.1123 -2.3544 14 6 -0.8200 -1.7126 -4.2514 15 6 0.4600 -1.6886 -4.8176 16 6 0.5756 -1.4142 -6.1693 17 35 2.2782 -1.3672 -6.9905 18 6 -0.5659 -1.1745 -6.9149 19 7 -1.7621 -1.2024 -6.3601 20 6 -1.9283 -1.4643 -5.0747 21 8 -3.1761 -1.4879 -4.5486 22 6 1.3912 -3.2974 1.3938 23 6 2.0771 -3.7870 0.1158 24 1 -0.4849 0.8369 -0.0733 25 1 -0.5067 -3.5438 -0.5711 26 1 -0.7864 -1.8431 -0.1264 27 1 0.9646 -1.9774 -2.3668 28 1 1.3356 -1.8790 -4.2146 29 1 -0.4754 -0.9609 -7.9697 30 1 -3.4789 -0.6318 -4.2161 31 1 2.0240 -2.8810 2.1774 32 1 0.5173 -3.8500 1.7392 33 1 1.6542 -4.6613 -0.3790 34 1 3.1614 -3.6927 0.0582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598698741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:12 Heat of formation + Delta-G solvation = -24.698988 kcal Electronic energy + Delta-G solvation = -21465.265747 eV Core-core repulsion = 18024.181560 eV Total energy + Delta-G solvation = -3441.084186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.96614 -40.04702 -38.48560 -38.15664 -35.00365 -34.22028 -33.96082 -32.91974 -30.13961 -28.03665 -27.34964 -25.57545 -24.16531 -22.96864 -21.47325 -21.13331 -20.05201 -18.95670 -18.35210 -17.79425 -17.21584 -16.74011 -16.36758 -16.08351 -15.75085 -15.51462 -15.01441 -14.69334 -14.54009 -14.17327 -13.74884 -13.59178 -13.36452 -12.94364 -12.88441 -12.56032 -12.28897 -12.28197 -12.02753 -11.56984 -11.49950 -11.20995 -11.06411 -10.88830 -10.70025 -10.51847 -10.14934 -9.96303 -9.63246 -7.93682 -6.19331 -0.67250 -0.31198 0.33501 1.39561 1.46914 1.54306 1.79027 2.22393 2.40106 2.45170 2.61498 3.05807 3.41436 3.48857 3.55793 3.67518 3.88271 4.19390 4.29306 4.41825 4.54690 4.59814 4.76052 4.81654 4.97903 5.02269 5.14738 5.31405 5.54204 5.61794 5.82203 6.00297 6.34329 6.37734 6.58477 6.75576 6.91418 7.43098 7.46246 8.91986 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.004638 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.780769 B = 6035.286810 C = 6928.291899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.037 3.963 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.290 1.290 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.005 3.995 10 C 0.175 3.825 11 N -0.670 5.670 12 C 0.549 3.451 13 O -0.570 6.570 14 C -0.202 4.202 15 C 0.003 3.997 16 C -0.166 4.166 17 Br -0.003 7.003 18 C 0.184 3.816 19 N -0.509 5.509 20 C 0.371 3.629 21 O -0.471 6.471 22 C -0.200 4.200 23 C -0.186 4.186 24 H 0.256 0.744 25 H 0.020 0.980 26 H 0.085 0.915 27 H 0.401 0.599 28 H 0.163 0.837 29 H 0.209 0.791 30 H 0.420 0.580 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.352 -1.228 -16.187 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.165 4.165 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.217 1.217 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.052 3.948 11 N -0.317 5.317 12 C 0.334 3.666 13 O -0.452 6.452 14 C -0.210 4.210 15 C -0.024 4.024 16 C -0.248 4.248 17 Br 0.082 6.918 18 C 0.025 3.975 19 N -0.229 5.229 20 C 0.192 3.808 21 O -0.281 6.281 22 C -0.238 4.238 23 C -0.223 4.223 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.102 0.898 27 H 0.237 0.763 28 H 0.180 0.820 29 H 0.226 0.774 30 H 0.282 0.718 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.271 -1.598 -16.633 17.026 hybrid contribution 0.869 1.252 1.202 1.941 sum 4.140 -0.345 -15.431 15.981 Atomic orbital electron populations 1.70049 1.06634 1.26531 1.49208 1.25548 0.95326 1.01426 0.94177 0.85722 0.79410 0.80584 0.77222 1.19010 1.20880 1.21684 1.20715 0.92715 0.89375 1.51061 0.92246 1.19296 0.93293 0.90757 0.96170 1.20800 0.97877 0.95693 0.80450 1.45439 1.08450 1.66560 1.11204 1.17971 0.84984 0.78053 0.85544 1.90732 1.24989 1.53044 1.76420 1.21212 0.94578 1.10136 0.95073 1.21927 0.96800 0.89777 0.93911 1.22914 0.95185 1.10793 0.95880 1.96797 1.17832 1.97664 1.79541 1.23375 0.83943 0.88845 1.01384 1.67554 1.26973 1.16659 1.11676 1.19384 0.84900 0.89486 0.87041 1.84648 1.26945 1.37984 1.78566 1.22963 1.02246 1.06208 0.92420 1.22964 0.98672 0.98702 1.01936 0.93420 0.96228 0.89751 0.76291 0.81992 0.77439 0.71771 0.90462 0.90618 0.89650 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.32 10.11 21.45 0.22 -46.10 16 2 C 0.04 1.82 5.31 84.66 0.45 2.27 16 3 Si 0.94 39.93 29.54 68.60 2.03 41.96 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.50 -24.11 8.43 25.60 0.22 -23.89 16 8 H 0.06 2.84 7.82 -2.91 -0.02 2.82 16 9 C 0.01 0.25 2.04 -52.93 -0.11 0.14 16 10 C 0.18 8.06 4.62 86.38 0.40 8.46 16 11 N -0.67 -27.55 4.97 -466.29 -2.32 -29.86 16 12 C 0.55 22.60 7.76 86.69 0.67 23.28 16 13 O -0.57 -27.33 15.19 16.77 0.25 -27.08 16 14 C -0.20 -6.70 5.90 -19.91 -0.12 -6.81 16 15 C 0.00 0.09 9.37 22.73 0.21 0.31 16 16 C -0.17 -3.62 6.24 22.36 0.14 -3.48 16 17 Br 0.00 -0.05 33.72 -20.37 -0.69 -0.74 16 18 C 0.18 3.84 10.92 84.73 0.93 4.76 16 19 N -0.51 -13.79 10.37 -307.93 -3.19 -16.98 16 20 C 0.37 11.78 7.77 85.13 0.66 12.44 16 21 O -0.47 -15.42 11.67 -66.53 -0.78 -16.19 16 22 C -0.20 -8.21 9.96 30.62 0.30 -7.90 16 23 C -0.19 -7.00 9.92 30.62 0.30 -6.70 16 24 H 0.26 13.22 8.32 -92.71 -0.77 12.45 16 25 H 0.02 0.88 8.09 -2.39 -0.02 0.87 16 26 H 0.08 4.55 5.89 -2.39 -0.01 4.53 16 27 H 0.40 15.17 6.28 -92.70 -0.58 14.59 16 28 H 0.16 3.99 6.59 -2.90 -0.02 3.97 16 29 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.42 10.60 9.06 -74.05 -0.67 9.93 16 31 H 0.08 3.18 8.14 -2.39 -0.02 3.17 16 32 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 33 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -60.97 317.80 -0.50 -61.46 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.08 Total: 30.66 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 4.06 Total: 2.87 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -5.29 Total: -92.95 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.52 Total: -43.27 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.69 Total: -0.74 kcal Total: -60.97 -0.50 -61.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598698741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.765 kcal (2) G-P(sol) polarization free energy of solvation -60.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds