Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35021 * 126.03806 * 2 1 4 4 C 1.35361 * 107.73310 * 179.70754 * 3 2 1 5 5 Br 1.89103 * 126.04566 * 180.25477 * 4 3 2 6 6 C 1.39912 * 107.91127 * 0.42904 * 4 3 2 7 7 C 1.50693 * 125.89818 * 179.82590 * 6 4 3 8 8 N 1.46502 * 109.47217 * 269.72057 * 7 6 4 9 9 C 1.35315 * 125.87191 * 125.00138 * 8 7 6 10 10 C 1.35344 * 106.17731 * 179.73450 * 9 8 7 11 11 C 1.50700 * 126.75128 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.46916 * 95.00467 * 11 10 9 13 13 C 1.36942 * 120.00167 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99805 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00359 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99468 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 119.99975 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47147 * 90.00395 * 17 15 13 19 19 H 1.48508 * 109.47273 * 210.00106 * 17 15 13 20 20 H 1.48502 * 109.47224 * 330.00214 * 17 15 13 21 21 N 1.33776 * 106.49718 * 359.97438 * 10 9 8 22 22 N 1.28633 * 108.88517 * 359.97438 * 21 10 9 23 23 N 1.30851 * 108.20675 * 359.56809 * 6 4 3 24 24 H 1.09000 * 109.46768 * 269.99833 * 1 2 3 25 25 H 1.09002 * 109.46753 * 29.99507 * 1 2 3 26 26 H 1.08996 * 109.46951 * 149.99538 * 1 2 3 27 27 H 1.08005 * 126.12913 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.47307 * 149.71988 * 7 6 4 29 29 H 1.09002 * 109.47101 * 29.72017 * 7 6 4 30 30 H 1.07998 * 126.90946 * 359.75328 * 9 8 7 31 31 H 1.09003 * 109.47303 * 214.99982 * 11 10 9 32 32 H 1.08998 * 109.47109 * 334.99997 * 11 10 9 33 33 H 0.97004 * 120.00370 * 359.97438 * 12 11 10 34 34 H 0.97002 * 119.99152 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.0918 0.0000 4 6 3.5445 0.6667 0.0066 5 35 5.0811 1.7688 0.0164 6 6 3.5349 -0.7324 0.0008 7 6 4.7495 -1.6243 0.0013 8 7 5.1439 -1.9131 -1.3798 9 6 6.3668 -1.6964 -1.9170 10 6 6.2917 -2.1083 -3.2040 11 6 7.3971 -2.0743 -4.2277 12 7 8.0727 -3.3738 -4.2600 13 6 9.1182 -3.5807 -5.1199 14 1 9.4444 -2.7860 -5.7746 15 6 9.7588 -4.8119 -5.1503 16 7 9.3609 -5.7804 -4.3528 17 14 11.1844 -5.0943 -6.3237 18 1 12.4576 -4.7275 -5.6532 19 1 11.2263 -6.5259 -6.7163 20 1 11.0027 -4.2541 -7.5346 21 7 5.0430 -2.5515 -3.3888 22 7 4.3886 -2.4231 -2.2888 23 7 2.2891 -1.1327 0.0004 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.9286 2.1200 -0.0004 28 1 4.5154 -2.5569 0.5148 29 1 5.5689 -1.1221 0.5157 30 1 7.2294 -1.2791 -1.4188 31 1 6.9764 -1.8591 -5.2099 32 1 8.1147 -1.2981 -3.9618 33 1 7.7800 -4.0874 -3.6718 34 1 9.8083 -6.6409 -4.3743 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603216174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = 204.531709 kcal Electronic energy + Delta-G solvation = -20359.446680 eV Core-core repulsion = 16992.888185 eV Total energy + Delta-G solvation = -3366.558495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.034 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.85508 -41.75246 -35.68682 -34.60370 -33.30165 -32.05676 -31.72710 -29.93238 -29.69029 -28.72684 -25.91732 -25.64133 -22.75142 -22.02608 -21.67366 -20.97311 -19.91968 -17.61122 -17.22423 -16.91187 -16.17689 -15.92362 -14.73465 -14.57644 -14.46412 -14.36882 -13.91602 -13.48487 -13.37142 -13.16186 -12.93287 -12.80912 -12.50448 -11.84384 -11.43955 -11.31303 -11.12434 -10.83024 -10.74467 -10.49278 -10.35397 -10.04187 -9.96638 -9.80702 -9.63239 -8.88441 -8.81082 -8.70148 -6.83890 -5.67089 -2.96221 1.17051 1.23763 1.68532 1.93437 2.15569 2.84489 3.05158 3.50364 3.55303 3.57620 3.85995 3.98206 4.30845 4.45967 4.63178 4.68899 4.80455 4.90236 4.93983 4.97301 5.17326 5.42046 5.58093 5.69463 5.72883 5.95655 6.26613 6.28979 6.52087 6.77075 6.84428 6.89634 7.01309 7.77693 8.50432 8.98012 9.62043 10.18804 10.54946 11.55800 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.002771 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.158637 B =10103.480606 C =11002.103641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.361 5.361 3 C 0.095 3.905 4 C -0.229 4.229 5 Br -0.011 7.011 6 C 0.081 3.919 7 C 0.201 3.799 8 N -0.296 5.296 9 C -0.036 4.036 10 C -0.007 4.007 11 C 0.234 3.766 12 N -0.726 5.726 13 C -0.238 4.238 14 H 0.073 0.927 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.909 3.091 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 N -0.255 5.255 22 N -0.086 5.086 23 N -0.242 5.242 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.187 0.813 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.189 0.811 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.386 0.614 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.324 20.247 17.052 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.142 5.142 3 C -0.055 4.055 4 C -0.321 4.321 5 Br 0.072 6.928 6 C -0.088 4.088 7 C 0.077 3.923 8 N -0.091 5.091 9 C -0.187 4.187 10 C -0.144 4.144 11 C 0.105 3.895 12 N -0.371 5.371 13 C -0.369 4.369 14 H 0.091 0.909 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.740 3.260 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.207 1.207 21 N -0.122 5.122 22 N -0.065 5.065 23 N -0.065 5.065 24 H 0.100 0.900 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.204 0.796 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.206 0.794 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.219 0.781 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.045 19.126 16.610 31.693 hybrid contribution 1.761 0.503 0.036 1.832 sum -17.284 19.629 16.646 31.002 Atomic orbital electron populations 1.22043 0.72780 1.05394 1.03991 1.48570 1.07181 1.03440 1.54989 1.22428 0.89363 0.94173 0.99499 1.21732 0.93238 0.93625 1.23495 1.96688 1.33077 1.64754 1.98311 1.21827 0.93568 0.91858 1.01575 1.20120 0.93429 0.99785 0.78953 1.47064 1.09055 1.42059 1.10901 1.23392 0.90391 1.09102 0.95772 1.22432 0.94820 1.02208 0.94945 1.18929 0.87496 0.90510 0.92597 1.42318 1.37761 1.09596 1.47394 1.19237 1.06658 0.97096 1.13869 0.90924 1.24754 1.00103 0.96209 0.99965 1.69689 1.43499 1.03734 1.41157 0.86162 0.82328 0.77021 0.80506 1.21777 1.21847 1.20706 1.75104 1.04762 1.16950 1.15424 1.78335 1.19742 1.15476 0.92927 1.77555 1.00233 1.07312 1.21364 0.89998 0.88868 0.88456 0.79603 0.86539 0.85551 0.79366 0.94443 0.94471 0.78079 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.47 59.85 0.69 1.10 16 2 N -0.36 -3.15 4.01 -68.13 -0.27 -3.43 16 3 C 0.09 0.75 11.46 -17.17 -0.20 0.56 16 4 C -0.23 -2.30 6.52 -39.98 -0.26 -2.56 16 5 Br -0.01 -0.10 33.61 -68.01 -2.29 -2.39 16 6 C 0.08 0.94 6.59 -82.39 -0.54 0.40 16 7 C 0.20 2.23 6.84 -5.20 -0.04 2.19 16 8 N -0.30 -4.57 3.43 -62.44 -0.21 -4.78 16 9 C -0.04 -0.59 11.50 -17.05 -0.20 -0.78 16 10 C -0.01 -0.13 6.61 -82.78 -0.55 -0.68 16 11 C 0.23 5.12 6.82 -5.20 -0.04 5.08 16 12 N -0.73 -19.54 5.59 -61.09 -0.34 -19.88 16 13 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 14 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 15 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -29.25 13.06 55.49 0.72 -28.52 16 17 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 N -0.25 -5.52 12.41 33.29 0.41 -5.11 16 22 N -0.09 -1.65 12.93 60.35 0.78 -0.87 16 23 N -0.24 -2.95 12.57 33.68 0.42 -2.53 16 24 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.19 0.77 8.06 -52.48 -0.42 0.35 16 28 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.13 1.03 7.78 -51.93 -0.40 0.62 16 30 H 0.19 2.35 8.06 -52.49 -0.42 1.93 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.39 11.18 7.66 -40.82 -0.31 10.87 16 34 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -37.67 328.36 -5.87 -43.54 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.64 Total: 3.36 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.38 Total: -2.23 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: 1.51 Total: -65.13 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.29 Total: -2.39 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.67 -5.87 -43.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603216174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.075 kcal (2) G-P(sol) polarization free energy of solvation -37.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds