Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35021 * 126.03806 * 2 1 4 4 C 1.35361 * 107.73310 * 179.70754 * 3 2 1 5 5 Br 1.89103 * 126.04566 * 180.25477 * 4 3 2 6 6 C 1.39912 * 107.91127 * 0.42904 * 4 3 2 7 7 C 1.50693 * 125.89818 * 179.82590 * 6 4 3 8 8 N 1.46502 * 109.47217 * 269.72057 * 7 6 4 9 9 C 1.35315 * 125.87191 * 125.00138 * 8 7 6 10 10 C 1.35344 * 106.17731 * 179.73450 * 9 8 7 11 11 C 1.50700 * 126.75128 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.46916 * 95.00467 * 11 10 9 13 13 C 1.36942 * 120.00167 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99805 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00359 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99468 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 119.99975 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47147 * 90.00395 * 17 15 13 19 19 H 1.48508 * 109.47273 * 210.00106 * 17 15 13 20 20 H 1.48502 * 109.47224 * 330.00214 * 17 15 13 21 21 N 1.33776 * 106.49718 * 359.97438 * 10 9 8 22 22 N 1.28633 * 108.88517 * 359.97438 * 21 10 9 23 23 N 1.30851 * 108.20675 * 359.56809 * 6 4 3 24 24 H 1.09000 * 109.46768 * 269.99833 * 1 2 3 25 25 H 1.09002 * 109.46753 * 29.99507 * 1 2 3 26 26 H 1.08996 * 109.46951 * 149.99538 * 1 2 3 27 27 H 1.08005 * 126.12913 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.47307 * 149.71988 * 7 6 4 29 29 H 1.09002 * 109.47101 * 29.72017 * 7 6 4 30 30 H 1.07998 * 126.90946 * 359.75328 * 9 8 7 31 31 H 1.09003 * 109.47303 * 214.99982 * 11 10 9 32 32 H 1.08998 * 109.47109 * 334.99997 * 11 10 9 33 33 H 0.97004 * 120.00370 * 359.97438 * 12 11 10 34 34 H 0.97002 * 119.99152 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.0918 0.0000 4 6 3.5445 0.6667 0.0066 5 35 5.0811 1.7688 0.0164 6 6 3.5349 -0.7324 0.0008 7 6 4.7495 -1.6243 0.0013 8 7 5.1439 -1.9131 -1.3798 9 6 6.3668 -1.6964 -1.9170 10 6 6.2917 -2.1083 -3.2040 11 6 7.3971 -2.0743 -4.2277 12 7 8.0727 -3.3738 -4.2600 13 6 9.1182 -3.5807 -5.1199 14 1 9.4444 -2.7860 -5.7746 15 6 9.7588 -4.8119 -5.1503 16 7 9.3609 -5.7804 -4.3528 17 14 11.1844 -5.0943 -6.3237 18 1 12.4576 -4.7275 -5.6532 19 1 11.2263 -6.5259 -6.7163 20 1 11.0027 -4.2541 -7.5346 21 7 5.0430 -2.5515 -3.3888 22 7 4.3886 -2.4231 -2.2888 23 7 2.2891 -1.1327 0.0004 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.9286 2.1200 -0.0004 28 1 4.5154 -2.5569 0.5148 29 1 5.5689 -1.1221 0.5157 30 1 7.2294 -1.2791 -1.4188 31 1 6.9764 -1.8591 -5.2099 32 1 8.1147 -1.2981 -3.9618 33 1 7.7800 -4.0874 -3.6718 34 1 9.8083 -6.6409 -4.3743 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603216174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = 176.690338 kcal Electronic energy + Delta-G solvation = -20360.653973 eV Core-core repulsion = 16992.888185 eV Total energy + Delta-G solvation = -3367.765788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.034 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.21326 -42.45331 -37.03974 -36.16544 -34.26470 -33.57003 -32.77274 -31.56555 -30.48808 -29.65082 -27.56218 -26.52779 -24.74732 -23.21100 -22.44864 -22.22990 -20.93939 -19.31028 -18.35727 -18.03282 -17.30016 -16.67588 -16.49764 -15.85910 -15.64415 -15.45609 -15.05179 -14.92923 -14.52227 -14.25754 -13.85619 -13.81325 -13.47929 -13.32447 -12.99035 -12.75262 -12.47491 -12.17826 -12.06814 -11.98115 -11.86219 -11.77947 -11.24359 -11.03825 -10.92950 -10.66805 -10.16332 -9.55034 -8.99109 -7.90551 -5.20866 0.44522 0.57604 0.66910 0.92244 1.48139 1.51897 1.54073 1.54976 1.63053 1.84148 2.61878 3.13068 3.27700 3.41339 3.50547 3.76207 3.97141 4.04458 4.10115 4.23863 4.29074 4.31324 4.39274 4.48866 4.65527 4.68328 4.89707 4.98104 5.18444 5.21066 5.53499 5.64319 5.77076 6.29132 6.30417 7.35816 7.55691 8.07427 8.33792 9.33560 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.002771 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.158637 B =10103.480606 C =11002.103641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.359 5.359 3 C 0.106 3.894 4 C -0.250 4.250 5 Br -0.007 7.007 6 C 0.066 3.934 7 C 0.191 3.809 8 N -0.280 5.280 9 C -0.010 4.010 10 C -0.038 4.038 11 C 0.238 3.762 12 N -0.739 5.739 13 C -0.242 4.242 14 H 0.084 0.916 15 C -0.079 4.079 16 N -0.973 5.973 17 Si 0.980 3.020 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.268 1.268 21 N -0.299 5.299 22 N -0.106 5.106 23 N -0.285 5.285 24 H 0.101 0.899 25 H 0.124 0.876 26 H 0.088 0.912 27 H 0.225 0.775 28 H 0.126 0.874 29 H 0.158 0.842 30 H 0.229 0.771 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.371 0.629 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.292 22.501 17.911 33.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.140 5.140 3 C -0.044 4.044 4 C -0.342 4.342 5 Br 0.076 6.924 6 C -0.102 4.102 7 C 0.069 3.931 8 N -0.074 5.074 9 C -0.162 4.162 10 C -0.176 4.176 11 C 0.110 3.890 12 N -0.382 5.382 13 C -0.374 4.374 14 H 0.102 0.898 15 C -0.271 4.271 16 N -0.624 5.624 17 Si 0.808 3.192 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.193 1.193 21 N -0.166 5.166 22 N -0.085 5.085 23 N -0.108 5.108 24 H 0.119 0.881 25 H 0.142 0.858 26 H 0.107 0.893 27 H 0.242 0.758 28 H 0.144 0.856 29 H 0.176 0.824 30 H 0.245 0.755 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.202 0.798 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.061 21.423 17.476 33.580 hybrid contribution 1.601 -0.076 -0.125 1.608 sum -17.460 21.347 17.351 32.582 Atomic orbital electron populations 1.22427 0.70476 1.06506 1.05645 1.48949 1.08468 1.02843 1.53755 1.23052 0.88641 0.95453 0.97262 1.21913 0.94331 0.93151 1.24762 1.96677 1.33027 1.64369 1.98371 1.21853 0.93415 0.92628 1.02350 1.20594 0.94904 1.00944 0.76650 1.47362 1.08424 1.39881 1.11762 1.23834 0.91308 1.06634 0.94386 1.22281 0.94244 1.04718 0.96372 1.18948 0.88289 0.88796 0.92977 1.42525 1.37790 1.11036 1.46833 1.19704 1.06642 0.97361 1.13670 0.89766 1.25654 1.03233 0.96115 1.02082 1.69868 1.45189 1.04073 1.43289 0.85048 0.79037 0.76407 0.78684 1.20874 1.22584 1.19260 1.75034 1.05881 1.18565 1.17127 1.78241 1.20344 1.16665 0.93201 1.77465 1.01043 1.09538 1.22781 0.88061 0.85805 0.89315 0.75844 0.85585 0.82417 0.75467 0.95523 0.91819 0.79812 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.47 127.77 1.47 2.01 16 2 N -0.36 -5.65 4.01 -369.46 -1.48 -7.13 16 3 C 0.11 1.42 11.46 83.54 0.96 2.38 16 4 C -0.25 -4.55 6.52 22.01 0.14 -4.40 16 5 Br -0.01 -0.12 33.61 -20.37 -0.68 -0.80 16 6 C 0.07 1.45 6.59 43.11 0.28 1.73 16 7 C 0.19 3.96 6.84 85.63 0.59 4.54 16 8 N -0.28 -8.36 3.43 -351.47 -1.20 -9.56 16 9 C -0.01 -0.31 11.50 83.49 0.96 0.65 16 10 C -0.04 -1.51 6.61 41.59 0.28 -1.24 16 11 C 0.24 10.35 6.82 85.63 0.58 10.93 16 12 N -0.74 -40.08 5.59 -347.18 -1.94 -42.02 16 13 C -0.24 -13.93 9.99 84.03 0.84 -13.09 16 14 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 15 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 16 N -0.97 -62.08 13.06 21.65 0.28 -61.79 16 17 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 N -0.30 -13.21 12.41 -48.60 -0.60 -13.82 16 22 N -0.11 -4.09 12.93 37.02 0.48 -3.61 16 23 N -0.28 -6.74 12.57 -47.36 -0.60 -7.34 16 24 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.23 1.01 8.06 -2.91 -0.02 0.98 16 28 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.16 2.17 7.78 -2.39 -0.02 2.15 16 30 H 0.23 4.90 8.06 -2.91 -0.02 4.87 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.37 21.98 7.66 -92.70 -0.71 21.27 16 34 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -83.26 328.36 3.27 -79.98 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.44 Total: 17.59 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 6.56 Total: -0.70 kcal Atomic # 7 Polarization: -140.20 SS G_CDS: -5.07 Total: -145.27 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.68 Total: -0.80 kcal Total: -83.26 3.27 -79.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603216174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.674 kcal (2) G-P(sol) polarization free energy of solvation -83.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds