Wall clock time and date at job start Sat Apr 11 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76194 * 102.99911 * 2 1 4 4 C 1.39345 * 119.93053 * 359.97438 * 3 2 1 5 5 C 1.36573 * 120.06948 * 179.97438 * 4 3 2 6 6 C 1.39926 * 119.93045 * 0.02562 * 5 4 3 7 7 C 1.47332 * 120.06952 * 179.97438 * 6 5 4 8 8 O 1.21528 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.34767 * 119.99995 * 359.97438 * 7 6 5 10 10 C 1.45202 * 116.99928 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47015 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99998 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99980 * 179.97438 * 11 10 9 14 14 C 1.37091 * 119.99826 * 179.97438 * 13 11 10 15 15 H 1.07991 * 120.00338 * 0.02562 * 14 13 11 16 16 C 1.38959 * 119.99801 * 180.02562 * 14 13 11 17 17 N 1.31419 * 119.99880 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47348 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47267 * 120.00053 * 18 16 14 21 21 H 1.48506 * 109.47089 * 240.00159 * 18 16 14 22 22 C 1.39879 * 119.86120 * 359.97438 * 6 5 4 23 23 C 1.36617 * 119.92881 * 359.72368 * 22 6 5 24 24 N 1.48016 * 119.96627 * 180.29723 * 23 22 6 25 25 O 1.21801 * 119.99714 * 0.23756 * 24 23 22 26 26 O 1.21794 * 120.00363 * 180.23469 * 24 23 22 27 27 H 1.09001 * 109.47190 * 59.99990 * 1 2 3 28 28 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47568 * 300.00134 * 1 2 3 30 30 H 1.07994 * 119.96815 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.04182 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.46577 * 299.99477 * 10 9 7 33 33 H 1.08998 * 109.47372 * 59.99724 * 10 9 7 34 34 H 0.97007 * 119.99497 * 359.97438 * 13 11 10 35 35 H 0.96997 * 119.99916 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.03671 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1900 2.6659 -0.0005 5 6 1.4940 3.9973 0.0000 6 6 2.8316 4.4081 0.0005 7 6 3.1630 5.8437 0.0005 8 8 4.3252 6.1990 0.0015 9 8 2.1774 6.7627 -0.0005 10 6 2.5776 8.1585 -0.0010 11 6 1.3503 9.0330 -0.0016 12 8 0.2469 8.5295 -0.0020 13 7 1.4788 10.3747 -0.0016 14 6 0.3623 11.1702 -0.0026 15 1 -0.6202 10.7218 -0.0029 16 6 0.4947 12.5534 -0.0031 17 7 1.6903 13.0990 -0.0032 18 14 -1.0265 13.6374 -0.0038 19 1 -2.2422 12.7844 -0.0042 20 1 -1.0236 14.4952 1.2083 21 1 -1.0232 14.4943 -1.2167 22 6 3.8535 3.4529 0.0011 23 6 3.5429 2.1225 0.0068 24 7 4.6236 1.1111 0.0140 25 8 5.7890 1.4651 0.0192 26 8 4.3475 -0.0752 0.0148 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.1579 2.3483 -0.0014 31 1 0.7029 4.7325 0.0000 32 1 3.1711 8.3666 0.8893 33 1 3.1723 8.3657 -0.8907 34 1 2.3613 10.7773 -0.0008 35 1 1.7828 14.0645 -0.0039 36 1 4.8869 3.7668 0.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731233562.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:23 Heat of formation + Delta-G solvation = -104.301187 kcal Electronic energy + Delta-G solvation = -25562.380382 eV Core-core repulsion = 21334.315778 eV Total energy + Delta-G solvation = -4228.064605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.41437 -41.95160 -40.47853 -39.84112 -37.80826 -37.62087 -36.03575 -33.66494 -33.41611 -33.25087 -30.16202 -29.78678 -27.82060 -26.92405 -25.79029 -23.78429 -22.56925 -21.46137 -20.82694 -20.09270 -19.86516 -19.07907 -18.77744 -18.41761 -18.13838 -17.82883 -17.38554 -16.66327 -16.55993 -16.00984 -15.85339 -15.82532 -15.70991 -15.01295 -14.81243 -14.28140 -14.03535 -13.89628 -13.84270 -13.68272 -13.56717 -13.15426 -12.95157 -12.76980 -12.53173 -12.46464 -12.39373 -12.10958 -11.99209 -11.96126 -11.58575 -11.40591 -11.03091 -11.02250 -10.52435 -10.12117 -8.86149 -8.52822 -6.03191 -1.46234 -0.94239 -0.05844 0.10522 0.19774 1.00120 1.14898 1.23215 1.34661 1.44458 1.58334 1.86158 2.05993 2.28200 2.89657 2.97058 3.13204 3.36155 3.45764 3.48658 3.60797 3.93805 4.13648 4.15472 4.20591 4.20873 4.28254 4.30241 4.52118 4.69737 4.89427 4.94573 5.08531 5.17042 5.37366 5.88353 6.35055 6.39666 6.48974 7.02538 7.39604 7.91832 8.64317 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.023284 B = 0.002086 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.271931 B =13419.449823 C =14601.261421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 S 0.012 5.988 3 C -0.015 4.015 4 C -0.134 4.134 5 C 0.024 3.976 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.522 6.522 9 O -0.329 6.329 10 C 0.071 3.929 11 C 0.439 3.561 12 O -0.614 6.614 13 N -0.559 5.559 14 C -0.335 4.335 15 H 0.087 0.913 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 0.997 3.003 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.030 3.970 23 C -0.067 4.067 24 N 0.035 4.965 25 O -0.201 6.201 26 O -0.136 6.136 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.194 0.806 31 H 0.175 0.825 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.400 0.600 35 H 0.280 0.720 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 -24.033 -0.008 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.362 4.362 2 S 0.262 5.738 3 C -0.132 4.132 4 C -0.159 4.159 5 C 0.002 3.998 6 C -0.148 4.148 7 C 0.359 3.641 8 O -0.413 6.413 9 O -0.244 6.244 10 C -0.006 4.006 11 C 0.226 3.774 12 O -0.501 6.501 13 N -0.196 5.196 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.820 3.180 19 H -0.193 1.193 20 H -0.196 1.196 21 H -0.196 1.196 22 C 0.009 3.991 23 C -0.159 4.159 24 N 0.546 4.454 25 O -0.405 6.405 26 O -0.354 6.354 27 H 0.125 0.875 28 H 0.152 0.848 29 H 0.125 0.875 30 H 0.211 0.789 31 H 0.192 0.808 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.010 -24.709 -0.011 24.791 hybrid contribution -0.051 2.025 -0.001 2.025 sum -2.062 -22.685 -0.012 22.778 Atomic orbital electron populations 1.24413 0.94256 1.09674 1.07827 1.87261 1.07241 0.95046 1.84234 1.22597 0.93015 1.03021 0.94561 1.21371 1.00036 0.90842 1.03667 1.21857 0.95350 0.97560 0.85016 1.18741 0.94688 0.88384 1.12965 1.21024 0.83160 0.87313 0.72642 1.90877 1.21248 1.82364 1.46799 1.86542 1.37646 1.16707 1.83482 1.22616 0.95390 0.76765 1.05800 1.19997 0.90148 0.83130 0.84170 1.90517 1.28648 1.74171 1.56721 1.41756 1.09884 1.03973 1.63989 1.19751 0.87877 0.88341 1.50408 0.89525 1.26130 1.01254 0.97940 0.95752 1.69679 1.23513 1.13121 1.49288 0.84804 0.77271 0.77561 0.78321 1.19340 1.19633 1.19641 1.20605 1.02066 0.88861 0.87523 1.19997 0.86162 0.88402 1.21333 1.43609 1.02129 1.01821 0.97883 1.94580 1.03622 1.86238 1.56049 1.94428 1.87995 1.00537 1.52401 0.87538 0.84792 0.87544 0.78895 0.80799 0.87243 0.87229 0.76577 0.91018 0.81876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.62 9.14 113.37 1.04 0.42 16 2 S 0.01 0.15 19.37 -56.49 -1.09 -0.95 16 3 C -0.01 -0.23 6.13 22.79 0.14 -0.09 16 4 C -0.13 -1.58 9.30 22.15 0.21 -1.38 16 5 C 0.02 0.39 9.56 22.29 0.21 0.60 16 6 C -0.14 -3.15 5.88 -20.08 -0.12 -3.27 16 7 C 0.51 14.70 7.88 70.22 0.55 15.25 16 8 O -0.52 -17.02 16.13 19.74 0.32 -16.70 16 9 O -0.33 -10.69 8.99 -50.39 -0.45 -11.14 16 10 C 0.07 2.45 5.95 71.24 0.42 2.88 16 11 C 0.44 19.94 7.86 87.66 0.69 20.63 16 12 O -0.61 -32.20 16.08 15.75 0.25 -31.94 16 13 N -0.56 -27.27 5.29 -306.99 -1.62 -28.90 16 14 C -0.33 -18.02 9.68 84.04 0.81 -17.21 16 15 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 16 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 17 N -0.92 -47.46 13.05 21.67 0.28 -47.18 16 18 Si 1.00 40.69 29.55 68.60 2.03 42.72 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 22 C 0.03 0.67 9.05 22.29 0.20 0.87 16 23 C -0.07 -1.44 6.83 36.25 0.25 -1.19 16 24 N 0.04 0.89 4.45 -46.76 -0.21 0.69 16 25 O -0.20 -5.72 18.42 18.89 0.35 -5.38 16 26 O -0.14 -3.38 15.79 18.89 0.30 -3.08 16 27 H 0.11 0.11 7.74 -2.39 -0.02 0.09 16 28 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.11 0.11 7.74 -2.39 -0.02 0.10 16 30 H 0.19 0.80 5.86 -2.91 -0.02 0.78 16 31 H 0.17 2.73 7.60 -2.91 -0.02 2.71 16 32 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.40 18.49 7.90 -92.70 -0.73 17.75 16 35 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 36 H 0.16 3.84 7.16 -2.91 -0.02 3.82 16 Total: -1.00 -70.32 345.10 5.47 -64.85 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.44 Total: 19.56 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 4.87 Total: 17.46 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -1.55 Total: -75.39 kcal Atomic # 8 Polarization: -69.01 SS G_CDS: 0.76 Total: -68.25 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.09 Total: -0.95 kcal Total: -70.32 5.47 -64.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731233562.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.448 kcal (2) G-P(sol) polarization free energy of solvation -70.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds