Wall clock time and date at job start Sat Apr 11 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76200 * 103.00002 * 2 1 4 4 C 1.39097 * 120.00679 * 0.29602 * 3 2 1 5 5 C 1.38182 * 120.22665 * 180.25866 * 4 3 2 6 6 C 1.38030 * 120.23825 * 359.44244 * 5 4 3 7 7 N 1.48024 * 119.99784 * 180.25715 * 6 5 4 8 8 O 1.21804 * 119.99581 * 353.44489 * 7 6 5 9 9 O 1.21793 * 120.00599 * 173.44049 * 7 6 5 10 10 C 1.39640 * 120.01147 * 0.27951 * 6 5 4 11 11 C 1.47747 * 120.11353 * 180.02562 * 10 6 5 12 12 O 1.21466 * 120.00206 * 304.69218 * 11 10 6 13 13 O 1.34712 * 119.99856 * 124.69034 * 11 10 6 14 14 C 1.45195 * 116.99814 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47006 * 179.97438 * 14 13 11 16 16 O 1.21294 * 120.00368 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00079 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00140 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99595 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00186 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99879 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00134 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46973 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47639 * 119.99787 * 22 20 18 25 25 H 1.48500 * 109.46985 * 240.00001 * 22 20 18 26 26 C 1.38689 * 120.00931 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47225 * 60.00492 * 1 2 3 28 28 H 1.09010 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47655 * 299.99883 * 1 2 3 30 30 H 1.07998 * 119.88396 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.88102 * 179.72329 * 5 4 3 32 32 H 1.08995 * 109.47775 * 300.00171 * 14 13 11 33 33 H 1.09005 * 109.46906 * 60.00430 * 14 13 11 34 34 H 0.96997 * 120.00109 * 0.02562 * 17 15 14 35 35 H 0.96996 * 119.99732 * 179.97438 * 21 20 18 36 36 H 1.08003 * 120.12203 * 0.04320 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1931 2.6656 0.0062 5 6 1.4988 4.0132 0.0009 6 6 2.8155 4.4273 0.0009 7 7 3.1368 5.8723 0.0009 8 8 2.2460 6.6942 -0.1196 9 8 4.2919 6.2394 0.1214 10 6 3.8445 3.4834 0.0005 11 6 5.2547 3.9242 0.0011 12 8 5.6560 4.6774 -0.8632 13 8 6.0955 3.4907 0.9602 14 6 7.4664 3.9651 0.8987 15 6 8.2522 3.3801 2.0438 16 8 7.7103 2.6361 2.8338 17 7 9.5575 3.6827 2.1896 18 6 10.2725 3.1501 3.2310 19 1 9.7899 2.4877 3.9344 20 6 11.6180 3.4625 3.3816 21 7 12.2050 4.2689 2.5260 22 14 12.5924 2.7362 4.8002 23 1 11.7066 1.8664 5.6151 24 1 13.7206 1.9322 4.2655 25 1 13.1245 3.8331 5.6481 26 6 3.5365 2.1225 0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1610 2.3479 0.0106 31 1 0.7046 4.7450 0.0012 32 1 7.9155 3.6571 -0.0455 33 1 7.4779 5.0528 0.9688 34 1 9.9910 4.2773 1.5576 35 1 13.1442 4.4873 2.6314 36 1 4.3281 1.3878 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:29 Heat of formation + Delta-G solvation = -83.235235 kcal Electronic energy + Delta-G solvation = -26150.134040 eV Core-core repulsion = 21922.982924 eV Total energy + Delta-G solvation = -4227.151116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.39301 -40.58649 -39.39749 -38.09857 -36.67880 -36.09780 -33.99849 -32.82518 -32.41051 -31.37024 -29.73691 -28.50766 -27.06057 -25.04932 -24.25821 -23.10293 -21.60378 -19.60026 -19.53681 -18.75908 -18.68208 -18.08020 -17.67516 -17.34760 -16.66143 -16.44542 -15.84737 -15.66942 -15.56215 -14.96041 -14.62685 -14.53865 -14.06420 -13.97866 -13.73411 -13.61791 -13.33451 -12.91361 -12.61472 -12.35828 -12.05860 -11.61981 -11.60801 -11.29328 -11.19083 -11.13346 -11.00208 -10.89698 -10.66461 -10.42345 -10.38160 -10.29374 -10.00314 -9.60992 -8.52753 -8.25241 -8.07551 -6.48954 -3.91016 -0.68962 0.16834 0.61609 0.97167 1.15942 1.58452 2.02796 2.30420 2.72830 3.12653 3.24739 3.31890 3.73700 3.75421 3.93896 4.09149 4.22311 4.23151 4.36150 4.37850 4.47652 4.87905 4.90947 4.97512 5.03710 5.10330 5.16197 5.17899 5.51986 5.58081 5.71519 6.03894 6.17705 6.44278 7.49020 7.49584 7.62752 7.95002 8.48954 9.07887 9.40032 9.89579 10.68292 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.002667 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.907058 B =10495.727237 C =12128.947141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 S -0.058 6.058 3 C -0.049 4.049 4 C -0.121 4.121 5 C -0.032 4.032 6 C -0.018 4.018 7 N 0.023 4.977 8 O -0.161 6.161 9 O -0.126 6.126 10 C -0.014 4.014 11 C 0.500 3.500 12 O -0.465 6.465 13 O -0.313 6.313 14 C 0.060 3.940 15 C 0.439 3.561 16 O -0.577 6.577 17 N -0.551 5.551 18 C -0.302 4.302 19 H 0.107 0.893 20 C 0.025 3.975 21 N -0.896 5.896 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.055 4.055 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.165 0.835 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.396 0.604 35 H 0.274 0.726 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.938 -5.989 -8.416 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 S 0.188 5.812 3 C -0.163 4.163 4 C -0.146 4.146 5 C -0.053 4.053 6 C -0.104 4.104 7 N 0.545 4.455 8 O -0.374 6.374 9 O -0.347 6.347 10 C -0.019 4.019 11 C 0.340 3.660 12 O -0.351 6.351 13 O -0.228 6.228 14 C -0.017 4.017 15 C 0.224 3.776 16 O -0.461 6.461 17 N -0.188 5.188 18 C -0.431 4.431 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.536 5.536 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.079 4.079 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.110 0.890 30 H 0.170 0.830 31 H 0.183 0.817 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -24.497 -8.022 -8.139 27.032 hybrid contribution 0.153 1.697 0.151 1.710 sum -24.344 -6.326 -7.989 26.391 Atomic orbital electron populations 1.23890 0.94411 1.08172 1.06310 1.86051 1.06506 0.99021 1.89580 1.22231 0.96099 0.99200 0.98743 1.21328 0.99662 0.91215 1.02399 1.20851 0.93890 0.97102 0.93433 1.21008 0.94952 0.80548 1.13901 1.43429 1.00994 1.02707 0.98397 1.94508 1.41551 1.48051 1.53277 1.94697 1.04245 1.84412 1.51382 1.18840 0.90689 0.93064 0.99302 1.20549 0.85960 0.78631 0.80891 1.90926 1.76874 1.30772 1.36524 1.86621 1.21997 1.66227 1.47929 1.22889 0.77642 1.00574 1.00562 1.19266 0.83429 0.87108 0.87831 1.90563 1.69600 1.39972 1.45970 1.41698 1.06979 1.43015 1.27147 1.19769 0.91716 1.26415 1.05179 0.87563 1.25318 0.96939 0.96757 0.98761 1.69624 1.12860 1.34843 1.36297 0.85744 0.79227 0.78723 0.80320 1.19097 1.20625 1.20602 1.20991 0.95918 0.93404 0.97570 0.89070 0.86465 0.88971 0.82968 0.81730 0.89183 0.88686 0.77066 0.91649 0.81758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.38 9.15 101.05 0.92 0.54 16 2 S -0.06 -0.37 22.56 -107.50 -2.43 -2.80 16 3 C -0.05 -0.40 6.11 -39.10 -0.24 -0.63 16 4 C -0.12 -0.77 9.36 -39.28 -0.37 -1.14 16 5 C -0.03 -0.27 9.54 -39.68 -0.38 -0.64 16 6 C -0.02 -0.22 6.86 -79.50 -0.55 -0.77 16 7 N 0.02 0.36 4.45 34.18 0.15 0.51 16 8 O -0.16 -2.36 18.46 -29.46 -0.54 -2.90 16 9 O -0.13 -2.30 14.98 -37.09 -0.56 -2.86 16 10 C -0.01 -0.19 5.75 -105.01 -0.60 -0.80 16 11 C 0.50 8.52 5.98 34.62 0.21 8.73 16 12 O -0.46 -8.70 14.55 -27.26 -0.40 -9.09 16 13 O -0.31 -6.00 9.77 -47.20 -0.46 -6.46 16 14 C 0.06 1.17 5.95 36.01 0.21 1.39 16 15 C 0.44 10.63 7.86 -10.98 -0.09 10.55 16 16 O -0.58 -16.03 16.08 -14.11 -0.23 -16.25 16 17 N -0.55 -13.99 5.29 -10.96 -0.06 -14.05 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 19 H 0.11 3.07 7.16 -52.48 -0.38 2.69 16 20 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 22 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.05 -0.59 9.53 -38.93 -0.37 -0.96 16 27 H 0.09 0.12 7.76 -51.93 -0.40 -0.29 16 28 H 0.12 0.15 8.14 -51.92 -0.42 -0.28 16 29 H 0.09 0.15 7.73 -51.92 -0.40 -0.25 16 30 H 0.15 0.42 5.86 -52.49 -0.31 0.11 16 31 H 0.17 0.98 7.61 -52.49 -0.40 0.58 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -34.83 346.11 -8.12 -42.95 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -3.03 Total: 5.07 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -1.49 Total: 8.35 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.82 Total: -36.93 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -2.18 Total: -37.57 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.43 Total: -2.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.83 -8.12 -42.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.287 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds