Wall clock time and date at job start Sat Apr 11 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76200 * 103.00002 * 2 1 4 4 C 1.39097 * 120.00679 * 0.29602 * 3 2 1 5 5 C 1.38182 * 120.22665 * 180.25866 * 4 3 2 6 6 C 1.38030 * 120.23825 * 359.44244 * 5 4 3 7 7 N 1.48024 * 119.99784 * 180.25715 * 6 5 4 8 8 O 1.21804 * 119.99581 * 353.44489 * 7 6 5 9 9 O 1.21793 * 120.00599 * 173.44049 * 7 6 5 10 10 C 1.39640 * 120.01147 * 0.27951 * 6 5 4 11 11 C 1.47747 * 120.11353 * 180.02562 * 10 6 5 12 12 O 1.21466 * 120.00206 * 304.69218 * 11 10 6 13 13 O 1.34712 * 119.99856 * 124.69034 * 11 10 6 14 14 C 1.45195 * 116.99814 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47006 * 179.97438 * 14 13 11 16 16 O 1.21294 * 120.00368 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00079 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00140 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99595 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00186 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99879 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00134 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46973 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47639 * 119.99787 * 22 20 18 25 25 H 1.48500 * 109.46985 * 240.00001 * 22 20 18 26 26 C 1.38689 * 120.00931 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47225 * 60.00492 * 1 2 3 28 28 H 1.09010 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47655 * 299.99883 * 1 2 3 30 30 H 1.07998 * 119.88396 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.88102 * 179.72329 * 5 4 3 32 32 H 1.08995 * 109.47775 * 300.00171 * 14 13 11 33 33 H 1.09005 * 109.46906 * 60.00430 * 14 13 11 34 34 H 0.96997 * 120.00109 * 0.02562 * 17 15 14 35 35 H 0.96996 * 119.99732 * 179.97438 * 21 20 18 36 36 H 1.08003 * 120.12203 * 0.04320 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1931 2.6656 0.0062 5 6 1.4988 4.0132 0.0009 6 6 2.8155 4.4273 0.0009 7 7 3.1368 5.8723 0.0009 8 8 2.2460 6.6942 -0.1196 9 8 4.2919 6.2394 0.1214 10 6 3.8445 3.4834 0.0005 11 6 5.2547 3.9242 0.0011 12 8 5.6560 4.6774 -0.8632 13 8 6.0955 3.4907 0.9602 14 6 7.4664 3.9651 0.8987 15 6 8.2522 3.3801 2.0438 16 8 7.7103 2.6361 2.8338 17 7 9.5575 3.6827 2.1896 18 6 10.2725 3.1501 3.2310 19 1 9.7899 2.4877 3.9344 20 6 11.6180 3.4625 3.3816 21 7 12.2050 4.2689 2.5260 22 14 12.5924 2.7362 4.8002 23 1 11.7066 1.8664 5.6151 24 1 13.7206 1.9322 4.2655 25 1 13.1245 3.8331 5.6481 26 6 3.5365 2.1225 0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1610 2.3479 0.0106 31 1 0.7046 4.7450 0.0012 32 1 7.9155 3.6571 -0.0455 33 1 7.4779 5.0528 0.9688 34 1 9.9910 4.2773 1.5576 35 1 13.1442 4.4873 2.6314 36 1 4.3281 1.3878 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:28 Heat of formation + Delta-G solvation = -104.829259 kcal Electronic energy + Delta-G solvation = -26151.070428 eV Core-core repulsion = 21922.982924 eV Total energy + Delta-G solvation = -4228.087504 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.47328 -41.87209 -40.46987 -39.89835 -37.90776 -37.50308 -36.06754 -33.64939 -33.44651 -33.20287 -30.29218 -29.81957 -28.11602 -26.74690 -25.45575 -24.03858 -22.72715 -21.50115 -20.57064 -20.11435 -19.88746 -19.64559 -18.77965 -18.49500 -17.99001 -17.85686 -17.22774 -16.77100 -16.51850 -16.27598 -15.86643 -15.65680 -15.60404 -15.01797 -14.82039 -14.24972 -14.10037 -13.99417 -13.89728 -13.58997 -13.49377 -13.21564 -12.96534 -12.80048 -12.49039 -12.43453 -12.39002 -12.11399 -12.00484 -11.90594 -11.61194 -11.60980 -11.42422 -10.78041 -10.56212 -10.14576 -8.77421 -8.54116 -6.05238 -1.64051 -0.58902 -0.02487 0.02971 0.25681 0.78382 1.12234 1.23692 1.33250 1.42617 1.57577 1.82536 1.87034 2.26579 2.78016 2.99233 3.11057 3.29402 3.43462 3.48262 3.69237 3.95580 4.07658 4.11128 4.17205 4.28301 4.30334 4.30983 4.37228 4.50614 4.84993 4.93661 4.99171 5.14640 5.35342 5.85797 6.25072 6.35234 6.45919 6.99983 7.35984 7.88867 8.63236 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.002667 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.907058 B =10495.727237 C =12128.947141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 S -0.082 6.082 3 C -0.040 4.040 4 C -0.097 4.097 5 C -0.013 4.013 6 C -0.042 4.042 7 N 0.025 4.975 8 O -0.120 6.120 9 O -0.221 6.221 10 C -0.042 4.042 11 C 0.501 3.499 12 O -0.489 6.489 13 O -0.332 6.332 14 C 0.071 3.929 15 C 0.438 3.562 16 O -0.617 6.617 17 N -0.555 5.555 18 C -0.338 4.338 19 H 0.085 0.915 20 C -0.009 4.009 21 N -0.915 5.915 22 Si 1.000 3.000 23 H -0.270 1.270 24 H -0.268 1.268 25 H -0.270 1.270 26 C -0.063 4.063 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.203 0.797 31 H 0.198 0.802 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.273 -7.374 -8.620 30.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.166 5.834 3 C -0.154 4.154 4 C -0.122 4.122 5 C -0.034 4.034 6 C -0.129 4.129 7 N 0.541 4.459 8 O -0.348 6.348 9 O -0.420 6.420 10 C -0.047 4.047 11 C 0.343 3.657 12 O -0.376 6.376 13 O -0.247 6.247 14 C -0.006 4.006 15 C 0.225 3.775 16 O -0.504 6.504 17 N -0.193 5.193 18 C -0.467 4.467 19 H 0.103 0.897 20 C -0.210 4.210 21 N -0.555 5.555 22 Si 0.823 3.177 23 H -0.195 1.195 24 H -0.193 1.193 25 H -0.195 1.195 26 C -0.087 4.087 27 H 0.130 0.870 28 H 0.150 0.850 29 H 0.128 0.872 30 H 0.220 0.780 31 H 0.215 0.785 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -27.639 -9.426 -8.353 30.374 hybrid contribution 0.831 1.966 0.153 2.140 sum -26.808 -7.460 -8.200 29.010 Atomic orbital electron populations 1.24127 0.89995 1.09827 1.08173 1.86334 1.11313 0.97444 1.88304 1.22460 0.95244 1.00884 0.96816 1.21894 1.01372 0.89654 0.99294 1.21352 0.92322 0.98727 0.90991 1.21213 0.96471 0.78164 1.17091 1.43812 1.00490 1.04064 0.97540 1.94427 1.40967 1.49283 1.50166 1.94718 1.05306 1.85404 1.56540 1.18712 0.88539 0.94556 1.02883 1.21172 0.87026 0.77797 0.79700 1.90884 1.77565 1.31832 1.37307 1.86608 1.21846 1.66866 1.49352 1.22639 0.78126 1.00643 0.99202 1.19945 0.83187 0.86116 0.88278 1.90520 1.70374 1.41701 1.47767 1.41734 1.07482 1.43078 1.26960 1.19770 0.92810 1.27827 1.06250 0.89670 1.26174 0.97166 0.96599 1.01085 1.69686 1.13530 1.34951 1.37310 0.84771 0.77657 0.78180 0.77111 1.19456 1.19279 1.19472 1.21031 0.97596 0.92042 0.98058 0.86958 0.84969 0.87230 0.78001 0.78503 0.86902 0.87708 0.76524 0.90893 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.09 9.15 113.37 1.04 1.13 16 2 S -0.08 -0.81 22.56 -56.49 -1.27 -2.08 16 3 C -0.04 -0.54 6.11 22.58 0.14 -0.40 16 4 C -0.10 -0.77 9.36 22.46 0.21 -0.56 16 5 C -0.01 -0.17 9.54 22.21 0.21 0.04 16 6 C -0.04 -1.05 6.86 36.66 0.25 -0.80 16 7 N 0.03 0.81 4.45 -45.77 -0.20 0.60 16 8 O -0.12 -3.39 18.46 18.88 0.35 -3.04 16 9 O -0.22 -8.71 14.98 26.19 0.39 -8.31 16 10 C -0.04 -1.19 5.75 -20.11 -0.12 -1.30 16 11 C 0.50 18.33 5.98 70.34 0.42 18.75 16 12 O -0.49 -19.69 14.55 27.61 0.40 -19.29 16 13 O -0.33 -13.56 9.77 -49.84 -0.49 -14.05 16 14 C 0.07 2.91 5.95 71.24 0.42 3.33 16 15 C 0.44 22.32 7.86 87.66 0.69 23.01 16 16 O -0.62 -36.05 16.08 15.72 0.25 -35.79 16 17 N -0.56 -29.41 5.29 -306.98 -1.62 -31.03 16 18 C -0.34 -19.31 9.68 84.04 0.81 -18.50 16 19 H 0.09 5.15 7.16 -2.91 -0.02 5.13 16 20 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 21 N -0.91 -49.48 13.05 21.66 0.28 -49.20 16 22 Si 1.00 42.59 29.55 68.60 2.03 44.62 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 C -0.06 -1.35 9.53 22.69 0.22 -1.14 16 27 H 0.11 -0.44 7.76 -2.39 -0.02 -0.46 16 28 H 0.13 -0.34 8.14 -2.38 -0.02 -0.36 16 29 H 0.11 -0.34 7.73 -2.39 -0.02 -0.36 16 30 H 0.20 -0.38 5.86 -2.91 -0.02 -0.39 16 31 H 0.20 1.31 7.61 -2.91 -0.02 1.29 16 32 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 33 H 0.10 4.07 8.14 -2.38 -0.02 4.05 16 34 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 35 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -81.62 346.11 5.32 -76.30 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.44 Total: 17.75 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 4.76 Total: 23.53 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -1.54 Total: -79.62 kcal Atomic # 8 Polarization: -81.39 SS G_CDS: 0.91 Total: -80.49 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.27 Total: -2.08 kcal Total: -81.62 5.32 -76.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.533 kcal (2) G-P(sol) polarization free energy of solvation -81.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds