Wall clock time and date at job start Sat Apr 11 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86808 * 120.00066 * 2 1 4 4 H 1.48497 * 109.46725 * 270.00133 * 3 2 1 5 5 H 1.48497 * 109.46836 * 29.99773 * 3 2 1 6 6 H 1.48495 * 109.47024 * 150.00005 * 3 2 1 7 7 C 1.38644 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00334 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00377 * 0.02562 * 7 2 1 10 10 C 1.35759 * 117.00748 * 174.92509 * 9 7 2 11 11 C 1.38898 * 120.05076 * 5.69262 * 10 9 7 12 12 C 1.38072 * 119.94421 * 180.02562 * 11 10 9 13 13 C 1.38430 * 120.05374 * 0.02562 * 12 11 10 14 14 Cl 1.73598 * 119.94550 * 179.97438 * 13 12 11 15 15 C 1.38395 * 120.11228 * 359.71379 * 13 12 11 16 16 C 1.38111 * 120.05350 * 0.55765 * 15 13 12 17 17 C 1.50701 * 120.02706 * 179.71886 * 16 15 13 18 18 O 1.45193 * 109.47050 * 359.72736 * 17 16 15 19 19 C 1.34229 * 117.00055 * 180.02562 * 18 17 16 20 20 O 1.20826 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.50696 * 120.00441 * 180.02562 * 19 18 17 22 22 H 1.09006 * 115.55058 * 29.41753 * 21 19 18 23 23 C 1.53003 * 117.50057 * 243.75425 * 21 19 18 24 24 C 1.53000 * 60.02909 * 252.47141 * 23 21 19 25 25 H 1.09000 * 117.49631 * 252.51794 * 24 23 21 26 26 C 1.50702 * 117.50190 * 107.49950 * 24 23 21 27 27 O 1.20828 * 119.99593 * 5.43182 * 26 24 23 28 28 O 1.34227 * 119.99959 * 185.42783 * 26 24 23 29 29 H 0.97004 * 119.99870 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03318 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.97647 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.97117 * 180.29884 * 15 13 12 33 33 H 1.08998 * 109.46981 * 239.72789 * 17 16 15 34 34 H 1.09001 * 109.47075 * 119.73003 * 17 16 15 35 35 H 1.09000 * 117.49293 * 359.96885 * 23 21 19 36 36 H 1.08995 * 117.50410 * 144.97247 * 23 21 19 37 37 H 0.96703 * 116.99762 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 -0.1059 11 6 3.4573 -3.4395 -0.0895 12 6 4.2030 -4.5964 -0.1984 13 6 3.5690 -5.8205 -0.3245 14 17 4.5092 -7.2733 -0.4620 15 6 2.1867 -5.8886 -0.3357 16 6 1.4364 -4.7337 -0.2327 17 6 -0.0686 -4.8079 -0.2513 18 8 -0.4831 -6.1924 -0.3916 19 6 -1.8033 -6.4327 -0.4258 20 8 -2.5866 -5.5167 -0.3410 21 6 -2.3086 -7.8452 -0.5690 22 1 -1.6631 -8.6197 -0.1547 23 6 -3.1012 -8.1874 -1.8322 24 6 -3.8209 -8.0674 -0.4873 25 1 -4.1697 -8.9880 -0.0194 26 6 -4.6917 -6.8569 -0.2696 27 8 -4.8792 -6.0772 -1.1734 28 8 -5.2589 -6.6449 0.9283 29 1 -0.4850 0.8401 -0.0004 30 1 3.9525 -2.4847 0.0084 31 1 5.2817 -4.5464 -0.1853 32 1 1.6944 -6.8454 -0.4293 33 1 -0.4506 -4.2275 -1.0911 34 1 -0.4640 -4.4028 0.6802 35 1 -3.2575 -7.3906 -2.5594 36 1 -2.9770 -9.1868 -2.2491 37 1 -5.8088 -5.8547 1.0200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:03 Heat of formation + Delta-G solvation = -154.644924 kcal Electronic energy + Delta-G solvation = -26338.397507 eV Core-core repulsion = 22073.813377 eV Total energy + Delta-G solvation = -4264.584130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.064 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04504 -39.88219 -39.28359 -37.38420 -36.87658 -36.09728 -35.72790 -35.50175 -32.49855 -31.60168 -29.03957 -27.05241 -25.73326 -25.50577 -24.45671 -21.97272 -21.13567 -20.89500 -20.12435 -18.63829 -18.20457 -17.61928 -17.25861 -16.78051 -16.27954 -15.79066 -15.66560 -15.03562 -14.89010 -14.66721 -14.57121 -14.11546 -13.81984 -13.61676 -13.04264 -12.98444 -12.92461 -12.41867 -12.37588 -12.08534 -11.88649 -11.59086 -11.23602 -11.21220 -11.17421 -11.11240 -11.05250 -10.73658 -10.57043 -10.55968 -10.47484 -10.33566 -10.26517 -9.57679 -8.95944 -8.33802 -7.35978 -6.61458 -4.21370 1.83063 1.85350 1.98252 2.31793 2.56246 2.75653 2.91795 3.04653 3.05637 3.10801 3.46421 3.82841 4.17758 4.21876 4.24303 4.53557 4.82361 4.89392 5.01497 5.03592 5.21436 5.27046 5.44086 5.53517 5.62142 5.67363 5.84676 5.87501 6.05278 6.30641 6.51195 6.51783 6.57854 6.76693 6.90205 7.01394 7.13915 7.42090 7.79888 7.82921 7.95449 8.82249 9.43635 10.54733 Molecular weight = 340.06amu Principal moments of inertia in cm(-1) A = 0.007931 B = 0.003781 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.457733 B = 7403.271371 C =10683.176341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.397 4.397 8 H 0.096 0.904 9 O -0.164 6.164 10 C 0.163 3.837 11 C -0.221 4.221 12 C -0.057 4.057 13 C -0.126 4.126 14 Cl -0.104 7.104 15 C -0.042 4.042 16 C -0.164 4.164 17 C 0.138 3.862 18 O -0.348 6.348 19 C 0.481 3.519 20 O -0.489 6.489 21 C -0.137 4.137 22 H 0.152 0.848 23 C -0.113 4.113 24 C -0.136 4.136 25 H 0.150 0.850 26 C 0.513 3.487 27 O -0.494 6.494 28 O -0.516 6.516 29 H 0.274 0.726 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -15.861 -0.316 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.473 4.473 8 H 0.114 0.886 9 O -0.066 6.066 10 C 0.107 3.893 11 C -0.240 4.240 12 C -0.075 4.075 13 C -0.153 4.153 14 Cl -0.076 7.076 15 C -0.061 4.061 16 C -0.166 4.166 17 C 0.065 3.935 18 O -0.264 6.264 19 C 0.322 3.678 20 O -0.376 6.376 21 C -0.156 4.156 22 H 0.170 0.830 23 C -0.150 4.150 24 C -0.154 4.154 25 H 0.167 0.833 26 C 0.354 3.646 27 O -0.380 6.380 28 O -0.328 6.328 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.280 -15.544 -0.567 15.896 hybrid contribution 0.322 1.378 0.203 1.429 sum -2.958 -14.166 -0.364 14.476 Atomic orbital electron populations 1.70035 1.06034 1.28221 1.44157 1.25352 0.95882 0.99024 0.96027 0.85669 0.78960 0.79700 0.78905 1.19676 1.20098 1.19002 1.21381 0.91964 0.80408 1.53523 0.88646 1.83968 1.34434 1.11525 1.76719 1.18970 0.90289 0.87123 0.92870 1.21030 0.93085 0.98800 1.11104 1.20681 0.99288 0.90456 0.97125 1.20281 0.91264 0.86458 1.17314 1.98279 1.73534 1.38460 1.97289 1.20327 0.91000 0.97760 0.97018 1.18444 0.92772 0.91272 1.14074 1.21474 0.91606 0.76924 1.03504 1.86314 1.24197 1.33082 1.82852 1.22281 0.81434 0.90393 0.73656 1.90780 1.56550 1.45856 1.44369 1.21864 0.92746 0.94690 1.06309 0.83043 1.23266 0.96611 1.05381 0.89735 1.21801 0.91062 0.97921 1.04665 0.83277 1.21713 0.77651 0.85282 0.79992 1.90727 1.58198 1.45119 1.43929 1.84402 1.62701 1.49910 1.35803 0.91613 0.84299 0.86203 0.84986 0.89727 0.89887 0.86305 0.85441 0.72786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.11 13.67 55.48 0.76 -23.35 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 3 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.40 -10.45 9.49 30.88 0.29 -10.16 16 8 H 0.10 2.29 5.20 -52.48 -0.27 2.02 16 9 O -0.16 -4.38 9.19 0.04 0.00 -4.38 16 10 C 0.16 3.69 6.62 -39.11 -0.26 3.43 16 11 C -0.22 -4.46 9.17 -39.40 -0.36 -4.82 16 12 C -0.06 -1.00 9.82 -39.57 -0.39 -1.39 16 13 C -0.13 -2.18 6.32 -39.45 -0.25 -2.43 16 14 Cl -0.10 -1.54 28.95 -51.86 -1.50 -3.04 16 15 C -0.04 -0.75 9.16 -39.57 -0.36 -1.12 16 16 C -0.16 -3.31 5.90 -104.44 -0.62 -3.93 16 17 C 0.14 2.71 5.33 36.01 0.19 2.91 16 18 O -0.35 -5.77 8.69 -39.26 -0.34 -6.11 16 19 C 0.48 7.51 7.71 36.00 0.28 7.78 16 20 O -0.49 -9.44 13.03 -26.04 -0.34 -9.78 16 21 C -0.14 -1.38 6.30 -91.74 -0.58 -1.96 16 22 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 23 C -0.11 -0.94 9.74 -26.73 -0.26 -1.20 16 24 C -0.14 -1.25 6.30 -91.73 -0.58 -1.83 16 25 H 0.15 0.83 8.14 -51.93 -0.42 0.40 16 26 C 0.51 6.76 5.99 36.01 0.22 6.98 16 27 O -0.49 -8.37 15.73 -26.04 -0.41 -8.78 16 28 O -0.52 -5.80 13.42 -39.25 -0.53 -6.33 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 30 H 0.14 2.75 5.64 -52.49 -0.30 2.45 16 31 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.13 2.11 6.99 -52.48 -0.37 1.74 16 33 H 0.08 1.81 8.13 -51.93 -0.42 1.39 16 34 H 0.08 1.74 8.13 -51.93 -0.42 1.31 16 35 H 0.12 1.27 7.68 -51.93 -0.40 0.87 16 36 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.41 3.27 9.10 45.56 0.41 3.68 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -33.58 348.57 -7.49 -41.07 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -2.59 Total: 7.53 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.77 Total: -6.69 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.76 Total: -23.35 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.62 Total: -35.39 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.50 Total: -3.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.58 -7.49 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.578 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds