Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29384 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48497 * 109.46935 * 239.99838 * 3 2 1 5 5 H 1.48505 * 109.46859 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47384 * 119.99838 * 3 2 1 7 7 C 1.46588 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99723 * 179.72547 * 7 2 1 9 9 O 1.22523 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.35078 * 116.99970 * 179.72068 * 9 7 2 11 11 O 1.21470 * 119.99786 * 359.97438 * 10 9 7 12 12 C 1.47312 * 119.99896 * 179.97438 * 10 9 7 13 13 C 1.40253 * 120.15029 * 269.99997 * 12 10 9 14 14 C 1.38947 * 119.66730 * 179.97438 * 13 12 10 15 15 C 1.38635 * 119.90911 * 0.10410 * 14 13 12 16 16 C 1.38477 * 120.43963 * 359.90689 * 15 14 13 17 17 N 1.48014 * 119.82728 * 180.02562 * 16 15 14 18 18 O 1.31700 * 120.00066 * 0.02562 * 17 16 15 19 19 O 1.31702 * 120.00658 * 179.97438 * 17 16 15 20 20 C 1.37738 * 120.34934 * 359.75876 * 16 15 14 21 21 N 1.48023 * 120.03550 * 180.30631 * 20 16 15 22 22 O 1.21797 * 119.99884 * 270.25493 * 21 20 16 23 23 O 1.21802 * 120.00067 * 90.25269 * 21 20 16 24 24 O 1.36147 * 120.72509 * 180.19997 * 14 13 12 25 25 C 1.43178 * 116.68287 * 342.75442 * 24 14 13 26 26 C 1.53475 * 108.22953 * 46.19938 * 25 24 14 27 27 O 1.35785 * 119.44498 * 359.80406 * 13 12 10 28 28 H 0.97000 * 119.99444 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.77884 * 179.97438 * 15 14 13 30 30 H 1.09005 * 109.71639 * 286.51915 * 25 24 14 31 31 H 1.08997 * 109.71563 * 165.88616 * 25 24 14 32 32 H 1.08998 * 109.71503 * 180.62248 * 26 25 24 33 33 H 1.08998 * 109.70727 * 59.99516 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2279 1.6177 0.0000 4 1 3.0817 1.6963 -1.2125 5 1 1.2629 2.7464 -0.0006 6 1 3.0816 1.6964 1.2125 7 6 2.0268 -1.2695 0.0006 8 1 3.1067 -1.2695 -0.0039 9 8 1.4141 -2.3306 0.0006 10 6 2.1498 -3.4634 -0.0048 11 8 3.3628 -3.3998 -0.0097 12 6 1.4809 -4.7760 -0.0045 13 6 1.1662 -5.4060 1.2083 14 6 0.5348 -6.6437 1.1969 15 6 0.2220 -7.2489 -0.0105 16 6 0.5328 -6.6273 -1.2083 17 7 0.1920 -7.2854 -2.4895 18 8 -0.4056 -8.4590 -2.4884 19 8 0.4856 -6.6971 -3.6307 20 6 1.1524 -5.3971 -1.2136 21 7 1.4754 -4.7358 -2.4979 22 8 2.5484 -4.9419 -3.0361 23 8 0.6681 -3.9856 -3.0166 24 8 0.2158 -7.2727 2.3614 25 6 0.8786 -6.8115 3.5437 26 6 0.8266 -5.2776 3.5560 27 8 1.4867 -4.7979 2.3793 28 1 -0.4849 0.8401 -0.0004 29 1 -0.2684 -8.2112 -0.0170 30 1 1.9167 -7.1440 3.5368 31 1 0.3724 -7.2035 4.4258 32 1 1.3354 -4.8996 4.4427 33 1 -0.2114 -4.9451 3.5572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751731072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -40.254014 kcal Electronic energy + Delta-G solvation = -30524.441412 eV Core-core repulsion = 25720.568136 eV Total energy + Delta-G solvation = -4803.873276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.060 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.44006 -41.68265 -40.31751 -39.67123 -38.06871 -37.92301 -36.13157 -35.77954 -34.71164 -32.87661 -32.46730 -32.16031 -29.90073 -27.80106 -26.56049 -25.74087 -24.72517 -23.96379 -21.65393 -21.20956 -19.78106 -19.20979 -19.04115 -18.49197 -18.43931 -18.34278 -17.82965 -17.29450 -16.75012 -16.46029 -16.26791 -15.65624 -15.61176 -15.12885 -15.08530 -14.93298 -14.72607 -14.39534 -13.91658 -13.56613 -12.97934 -12.31865 -12.20698 -11.71416 -11.64729 -11.54177 -11.45177 -11.38212 -11.23173 -10.94561 -10.90708 -10.84435 -10.71614 -10.65049 -10.17238 -9.61376 -9.28300 -9.11234 -9.09997 -7.04370 -4.08994 -1.14152 -0.00739 0.50793 0.53788 0.83716 1.22837 2.08473 2.40036 2.52909 2.64032 2.94253 2.97341 3.09967 3.22920 3.50724 3.76643 3.82430 3.98304 4.18734 4.27544 4.37960 4.50172 4.54969 4.69153 4.85689 4.90327 4.98730 5.13402 5.40596 6.00658 6.13994 6.40661 6.48000 6.52582 6.85486 7.58577 7.87833 8.36980 8.57000 9.72970 10.15182 Molecular weight = 340.06amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.005325 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.553464 B = 5256.756237 C = 7168.354400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.053 3.947 3 Si 0.953 3.047 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.387 4.387 8 H 0.099 0.901 9 O -0.117 6.117 10 C 0.309 3.691 11 O -0.541 6.541 12 C 0.012 3.988 13 C 0.151 3.849 14 C 0.079 3.921 15 C -0.036 4.036 16 C 0.028 3.972 17 N -0.022 5.022 18 O -0.136 6.136 19 O -0.156 6.156 20 C 0.059 3.941 21 N 0.024 4.976 22 O -0.108 6.108 23 O -0.097 6.097 24 O -0.286 6.286 25 C 0.016 3.984 26 C 0.011 3.989 27 O -0.264 6.264 28 H 0.291 0.709 29 H 0.188 0.812 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 -11.363 10.159 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.164 4.164 3 Si 0.775 3.225 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.117 0.883 9 O -0.017 6.017 10 C 0.163 3.837 11 O -0.446 6.446 12 C 0.008 3.992 13 C 0.101 3.899 14 C 0.031 3.969 15 C -0.056 4.056 16 C -0.059 4.059 17 N 0.460 4.540 18 O -0.336 6.336 19 O -0.347 6.347 20 C -0.024 4.024 21 N 0.560 4.440 22 O -0.333 6.333 23 O -0.324 6.324 24 O -0.199 6.199 25 C -0.059 4.059 26 C -0.063 4.063 27 O -0.175 6.175 28 H 0.103 0.897 29 H 0.205 0.795 30 H 0.109 0.891 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.914 -11.219 11.504 16.331 hybrid contribution 0.298 0.619 -0.330 0.762 sum -2.615 -10.600 11.175 15.623 Atomic orbital electron populations 1.68923 1.08106 1.30630 1.34904 1.27118 0.95217 0.99199 0.94892 0.85573 0.79173 0.77234 0.80522 1.18283 1.19684 1.18611 1.20814 0.94113 0.81395 1.50217 0.88323 1.80527 1.41133 1.13313 1.66701 1.19144 0.85957 0.83400 0.95170 1.90674 1.12851 1.84831 1.56266 1.18014 0.97925 0.95981 0.87278 1.18880 0.94495 0.89235 0.87265 1.18279 1.00750 0.90078 0.87748 1.19997 0.98480 1.01326 0.85786 1.19088 1.09728 0.93225 0.83895 1.50117 0.98474 1.02084 1.03335 1.96256 1.39888 1.01522 1.95934 1.96431 1.58062 1.65486 1.14693 1.20420 1.02582 0.92427 0.86982 1.42726 1.00996 0.99948 1.00295 1.94577 1.10435 1.65884 1.62377 1.94625 1.44570 1.29592 1.63651 1.86400 1.63340 1.57057 1.13151 1.23951 1.00184 0.94890 0.86872 1.24046 1.00662 0.94256 0.87364 1.86554 1.61475 1.56810 1.12641 0.89723 0.79484 0.89115 0.84359 0.84248 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 56. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.90 13.66 55.99 0.76 -20.14 16 2 C 0.05 1.37 5.69 -15.22 -0.09 1.28 16 3 Si 0.95 19.32 29.64 -169.99 -5.04 14.28 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.39 -11.02 9.62 34.10 0.33 -10.69 16 8 H 0.10 2.89 6.70 -52.49 -0.35 2.53 16 9 O -0.12 -3.35 9.30 -1.89 -0.02 -3.37 16 10 C 0.31 8.12 6.23 34.42 0.21 8.34 16 11 O -0.54 -15.55 16.23 -19.22 -0.31 -15.86 16 12 C 0.01 0.25 5.76 -104.85 -0.60 -0.35 16 13 C 0.15 2.49 6.51 -38.56 -0.25 2.24 16 14 C 0.08 1.00 6.49 -39.17 -0.25 0.75 16 15 C -0.04 -0.46 9.48 -39.35 -0.37 -0.83 16 16 C 0.03 0.48 6.87 -80.04 -0.55 -0.07 16 17 N -0.02 -0.39 4.98 33.92 0.17 -0.22 16 18 O -0.14 -2.18 19.13 -31.57 -0.60 -2.78 16 19 O -0.16 -3.17 16.91 -39.77 -0.67 -3.84 16 20 C 0.06 1.20 6.14 -79.53 -0.49 0.71 16 21 N 0.02 0.56 1.87 34.17 0.06 0.63 16 22 O -0.11 -2.52 18.76 -34.28 -0.64 -3.17 16 23 O -0.10 -2.32 18.80 -34.09 -0.64 -2.96 16 24 O -0.29 -2.72 10.42 -33.04 -0.34 -3.07 16 25 C 0.02 0.10 7.26 37.40 0.27 0.37 16 26 C 0.01 0.10 7.26 37.40 0.27 0.37 16 27 O -0.26 -4.08 9.83 -31.90 -0.31 -4.39 16 28 H 0.29 6.77 8.26 -40.82 -0.34 6.43 16 29 H 0.19 1.76 7.56 -52.48 -0.40 1.37 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.14 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -35.45 323.26 -5.81 -41.26 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: -1.57 Total: -3.36 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.52 Total: 2.12 kcal Atomic # 7 Polarization: -20.73 SS G_CDS: 1.00 Total: -19.73 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -3.55 Total: -39.43 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.04 Total: 14.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.45 -5.81 -41.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751731072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.008 kcal (2) G-P(sol) polarization free energy of solvation -35.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds