Wall clock time and date at job start Sat Apr 11 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29384 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48497 * 109.46935 * 239.99838 * 3 2 1 5 5 H 1.48505 * 109.46859 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47384 * 119.99838 * 3 2 1 7 7 C 1.46588 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99723 * 179.72547 * 7 2 1 9 9 O 1.22523 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.35078 * 116.99970 * 179.72068 * 9 7 2 11 11 O 1.21470 * 119.99786 * 359.97438 * 10 9 7 12 12 C 1.47312 * 119.99896 * 179.97438 * 10 9 7 13 13 C 1.40253 * 120.15029 * 269.99997 * 12 10 9 14 14 C 1.38947 * 119.66730 * 179.97438 * 13 12 10 15 15 C 1.38635 * 119.90911 * 0.10410 * 14 13 12 16 16 C 1.38477 * 120.43963 * 359.90689 * 15 14 13 17 17 N 1.48014 * 119.82728 * 180.02562 * 16 15 14 18 18 O 1.31700 * 120.00066 * 0.02562 * 17 16 15 19 19 O 1.31702 * 120.00658 * 179.97438 * 17 16 15 20 20 C 1.37738 * 120.34934 * 359.75876 * 16 15 14 21 21 N 1.48023 * 120.03550 * 180.30631 * 20 16 15 22 22 O 1.21797 * 119.99884 * 270.25493 * 21 20 16 23 23 O 1.21802 * 120.00067 * 90.25269 * 21 20 16 24 24 O 1.36147 * 120.72509 * 180.19997 * 14 13 12 25 25 C 1.43178 * 116.68287 * 342.75442 * 24 14 13 26 26 C 1.53475 * 108.22953 * 46.19938 * 25 24 14 27 27 O 1.35785 * 119.44498 * 359.80406 * 13 12 10 28 28 H 0.97000 * 119.99444 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.77884 * 179.97438 * 15 14 13 30 30 H 1.09005 * 109.71639 * 286.51915 * 25 24 14 31 31 H 1.08997 * 109.71563 * 165.88616 * 25 24 14 32 32 H 1.08998 * 109.71503 * 180.62248 * 26 25 24 33 33 H 1.08998 * 109.70727 * 59.99516 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2279 1.6177 0.0000 4 1 3.0817 1.6963 -1.2125 5 1 1.2629 2.7464 -0.0006 6 1 3.0816 1.6964 1.2125 7 6 2.0268 -1.2695 0.0006 8 1 3.1067 -1.2695 -0.0039 9 8 1.4141 -2.3306 0.0006 10 6 2.1498 -3.4634 -0.0048 11 8 3.3628 -3.3998 -0.0097 12 6 1.4809 -4.7760 -0.0045 13 6 1.1662 -5.4060 1.2083 14 6 0.5348 -6.6437 1.1969 15 6 0.2220 -7.2489 -0.0105 16 6 0.5328 -6.6273 -1.2083 17 7 0.1920 -7.2854 -2.4895 18 8 -0.4056 -8.4590 -2.4884 19 8 0.4856 -6.6971 -3.6307 20 6 1.1524 -5.3971 -1.2136 21 7 1.4754 -4.7358 -2.4979 22 8 2.5484 -4.9419 -3.0361 23 8 0.6681 -3.9856 -3.0166 24 8 0.2158 -7.2727 2.3614 25 6 0.8786 -6.8115 3.5437 26 6 0.8266 -5.2776 3.5560 27 8 1.4867 -4.7979 2.3793 28 1 -0.4849 0.8401 -0.0004 29 1 -0.2684 -8.2112 -0.0170 30 1 1.9167 -7.1440 3.5368 31 1 0.3724 -7.2035 4.4258 32 1 1.3354 -4.8996 4.4427 33 1 -0.2114 -4.9451 3.5572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751731072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:10 Heat of formation + Delta-G solvation = -64.119624 kcal Electronic energy + Delta-G solvation = -30525.476303 eV Core-core repulsion = 25720.568136 eV Total energy + Delta-G solvation = -4804.908167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.060 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.90566 -43.05503 -42.31821 -41.02752 -39.31292 -39.05414 -37.94965 -37.81697 -36.09342 -34.91536 -33.60597 -33.57005 -30.80682 -29.29454 -28.28143 -27.25901 -25.92853 -25.49341 -23.06598 -22.76771 -21.27454 -20.60744 -20.49388 -20.30720 -20.22922 -19.58287 -19.17511 -19.05738 -17.97740 -17.84823 -17.61707 -17.20757 -16.95137 -16.60487 -16.51530 -16.36750 -15.89725 -15.75583 -15.20478 -14.72020 -14.50411 -14.05299 -13.52111 -13.38723 -13.09594 -13.05790 -12.82687 -12.73282 -12.68533 -12.54451 -12.47383 -12.29400 -12.22258 -12.21676 -12.13300 -11.47129 -11.05475 -10.86935 -10.27435 -9.01472 -6.25665 -2.46518 -1.34382 -0.99148 -0.83880 -0.78465 -0.30005 0.69412 1.00729 1.23662 1.32131 1.39841 1.44781 1.53067 1.71091 2.11382 2.28587 2.60057 2.65691 2.83043 3.11060 3.17943 3.23066 3.68795 3.81189 3.86478 4.01177 4.14719 4.19761 4.43215 4.49073 4.72562 4.78398 5.04615 5.18397 5.48621 5.51099 6.00928 6.32406 6.47022 7.68854 8.16968 Molecular weight = 340.06amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.005325 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.553464 B = 5256.756237 C = 7168.354400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.020 3.980 3 Si 1.023 2.977 4 H -0.262 1.262 5 H -0.240 1.240 6 H -0.251 1.251 7 C -0.443 4.443 8 H 0.076 0.924 9 O -0.139 6.139 10 C 0.316 3.684 11 O -0.579 6.579 12 C -0.031 4.031 13 C 0.157 3.843 14 C 0.115 3.885 15 C 0.001 3.999 16 C 0.025 3.975 17 N -0.026 5.026 18 O -0.032 6.032 19 O -0.266 6.266 20 C 0.038 3.962 21 N 0.025 4.975 22 O -0.126 6.126 23 O -0.135 6.135 24 O -0.266 6.266 25 C 0.015 3.985 26 C -0.005 4.005 27 O -0.298 6.298 28 H 0.307 0.693 29 H 0.241 0.759 30 H 0.104 0.896 31 H 0.192 0.808 32 H 0.170 0.830 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 -14.145 13.819 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.195 4.195 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.163 1.163 6 H -0.175 1.175 7 C -0.520 4.520 8 H 0.093 0.907 9 O -0.039 6.039 10 C 0.171 3.829 11 O -0.486 6.486 12 C -0.035 4.035 13 C 0.106 3.894 14 C 0.066 3.934 15 C -0.019 4.019 16 C -0.063 4.063 17 N 0.458 4.542 18 O -0.264 6.264 19 O -0.427 6.427 20 C -0.045 4.045 21 N 0.557 4.443 22 O -0.351 6.351 23 O -0.357 6.357 24 O -0.179 6.179 25 C -0.058 4.058 26 C -0.078 4.078 27 O -0.210 6.210 28 H 0.119 0.881 29 H 0.257 0.743 30 H 0.122 0.878 31 H 0.209 0.791 32 H 0.187 0.813 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.674 -13.739 15.018 20.884 hybrid contribution 0.704 1.038 -1.049 1.635 sum -3.970 -12.702 13.969 19.293 Atomic orbital electron populations 1.68923 1.09493 1.32755 1.34370 1.28340 0.96296 1.01828 0.93010 0.84663 0.78359 0.72638 0.80545 1.18683 1.16288 1.17496 1.20977 0.93607 0.82879 1.54583 0.90676 1.80576 1.41645 1.14021 1.67658 1.20027 0.85921 0.84647 0.92332 1.90603 1.14792 1.86061 1.57123 1.17772 1.01750 0.94282 0.89715 1.18795 0.94137 0.90278 0.86172 1.18134 0.97778 0.88038 0.89402 1.20555 0.95756 1.01957 0.83613 1.19213 1.10072 0.92259 0.84775 1.50142 0.98424 1.02003 1.03600 1.96176 1.34251 1.00090 1.95847 1.96502 1.64019 1.67139 1.15057 1.20308 1.05569 0.94185 0.84429 1.43102 1.00366 0.99449 1.01396 1.94519 1.10887 1.65959 1.63745 1.94581 1.44722 1.31076 1.65314 1.86476 1.62849 1.55896 1.12661 1.24457 1.01713 0.92905 0.86720 1.24658 1.01168 0.96388 0.85567 1.86529 1.62412 1.58207 1.13864 0.88082 0.74282 0.87833 0.79090 0.81292 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.68 13.66 23.21 0.32 -44.36 16 2 C 0.02 1.06 5.69 87.23 0.50 1.56 16 3 Si 1.02 40.16 29.64 68.60 2.03 42.20 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.24 -8.14 7.11 99.48 0.71 -7.44 16 6 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.44 -27.16 9.62 70.00 0.67 -26.49 16 8 H 0.08 4.81 6.70 -2.91 -0.02 4.79 16 9 O -0.14 -8.57 9.30 81.94 0.76 -7.81 16 10 C 0.32 17.88 6.23 70.21 0.44 18.32 16 11 O -0.58 -36.04 16.23 19.91 0.32 -35.72 16 12 C -0.03 -1.39 5.76 -20.01 -0.12 -1.50 16 13 C 0.16 5.03 6.51 22.93 0.15 5.18 16 14 C 0.12 2.44 6.49 22.53 0.15 2.59 16 15 C 0.00 0.01 9.48 22.42 0.21 0.23 16 16 C 0.02 0.80 6.87 36.31 0.25 1.05 16 17 N -0.03 -0.89 4.98 -46.61 -0.23 -1.13 16 18 O -0.03 -0.86 19.13 3.51 0.07 -0.80 16 19 O -0.27 -11.52 16.91 11.35 0.19 -11.33 16 20 C 0.04 1.62 6.14 36.65 0.23 1.85 16 21 N 0.03 1.29 1.87 -45.81 -0.09 1.20 16 22 O -0.13 -6.50 18.76 23.50 0.44 -6.06 16 23 O -0.13 -7.17 18.80 23.31 0.44 -6.73 16 24 O -0.27 -3.33 10.42 -82.95 -0.86 -4.20 16 25 C 0.02 0.10 7.26 72.14 0.52 0.62 16 26 C -0.01 -0.07 7.26 72.14 0.52 0.46 16 27 O -0.30 -8.96 9.83 -78.86 -0.78 -9.74 16 28 H 0.31 14.37 8.26 -92.71 -0.77 13.60 16 29 H 0.24 2.49 7.56 -2.91 -0.02 2.47 16 30 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.19 -0.62 8.14 -2.39 -0.02 -0.63 16 32 H 0.17 1.18 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -90.65 323.26 7.37 -83.27 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: 1.24 Total: -2.66 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 3.52 Total: 3.85 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.00 Total: -44.29 kcal Atomic # 8 Polarization: -82.95 SS G_CDS: 0.58 Total: -82.37 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.20 kcal Total: -90.65 7.37 -83.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751731072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.153 kcal (2) G-P(sol) polarization free energy of solvation -90.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds