Wall clock time and date at job start Sat Apr 11 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48503 * 109.47450 * 239.99959 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46855 * 120.00436 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.34777 * 119.99511 * 65.28308 * 14 11 10 16 16 O 1.21593 * 120.00264 * 359.71858 * 15 14 11 17 17 C 1.47563 * 119.99792 * 179.72162 * 15 14 11 18 18 C 1.40123 * 120.58888 * 359.97438 * 17 15 14 19 19 N 1.30610 * 121.17028 * 179.97438 * 18 17 15 20 20 C 1.34904 * 122.44944 * 359.97438 * 19 18 17 21 21 C 1.40618 * 128.46125 * 179.97438 * 20 19 18 22 22 C 1.32278 * 115.91011 * 180.02562 * 21 20 19 23 23 S 1.75499 * 110.84000 * 359.97438 * 22 21 20 24 24 C 1.40095 * 119.27332 * 0.02562 * 20 19 18 25 25 C 1.39371 * 119.74947 * 359.74685 * 24 20 19 26 26 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46912 * 60.00244 * 9 7 2 28 28 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 29 29 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 30 30 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 31 31 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 32 32 H 1.08001 * 119.41507 * 359.95130 * 18 17 15 33 33 H 1.07998 * 122.04109 * 359.97438 * 21 20 19 34 34 H 1.08005 * 124.57805 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.73405 * 180.26185 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.3447 -6.5166 1.0558 16 8 3.2237 -5.7735 2.0106 17 6 4.3942 -7.5539 1.0565 18 6 4.5443 -8.4171 -0.0371 19 7 5.4695 -9.3389 -0.0487 20 6 6.3279 -9.5158 0.9769 21 6 7.3630 -10.4599 1.0982 22 6 8.0593 -10.4130 2.2219 23 16 7.4656 -9.1380 3.2715 24 6 6.2320 -8.6859 2.1014 25 6 5.2590 -7.6890 2.1443 26 1 -0.4850 0.8402 -0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8725 -3.6047 0.8878 30 1 2.8712 -3.6040 -0.8922 31 1 2.6168 -6.9855 -0.7650 32 1 3.8829 -8.3187 -0.8852 33 1 7.5758 -11.1797 0.3217 34 1 8.8820 -11.0706 2.4610 35 1 5.1735 -7.0375 3.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776115627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:16 Heat of formation + Delta-G solvation = -51.378236 kcal Electronic energy + Delta-G solvation = -23702.818343 eV Core-core repulsion = 19919.801520 eV Total energy + Delta-G solvation = -3783.016822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23775 -39.75492 -36.78711 -36.18726 -35.68050 -34.65200 -33.91890 -33.04337 -31.20505 -30.42193 -25.84393 -25.60116 -24.37914 -22.74949 -21.73254 -21.27572 -19.58718 -19.23891 -17.92935 -17.36939 -17.12947 -16.62563 -16.44488 -15.95114 -15.39167 -15.24143 -15.04345 -14.64496 -14.57451 -14.55709 -13.78291 -13.47445 -13.41634 -13.12858 -12.56942 -12.43811 -12.26505 -11.83668 -11.77171 -11.67325 -11.61864 -11.09858 -11.05245 -11.01741 -10.93107 -10.75170 -10.42977 -10.37569 -9.94423 -9.73318 -9.31929 -9.21137 -8.54759 -8.50367 -6.12942 -4.18585 -0.39942 0.41723 0.52409 0.83593 1.30984 1.32465 2.29714 2.60576 3.26522 3.27962 3.32592 3.34585 3.46478 3.84650 4.03692 4.09971 4.23438 4.36678 4.45415 4.52771 4.59585 4.72988 4.90272 5.17281 5.22340 5.28422 5.40232 5.54929 5.57144 5.68560 5.85809 6.41465 6.49423 7.19658 7.26398 7.28637 7.33330 7.79812 8.15382 8.84105 9.46019 10.98084 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.002589 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.205627 B =10811.260775 C =11772.786275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.574 4.574 11 S 2.565 3.435 12 O -0.950 6.950 13 O -0.935 6.935 14 N -1.054 6.054 15 C 0.590 3.410 16 O -0.480 6.480 17 C -0.187 4.187 18 C 0.165 3.835 19 N -0.459 5.459 20 C 0.150 3.850 21 C -0.121 4.121 22 C -0.163 4.163 23 S 0.136 5.864 24 C -0.216 4.216 25 C 0.041 3.959 26 H 0.266 0.734 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.427 0.573 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.796 -22.622 2.479 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.709 4.709 11 S 2.665 3.335 12 O -0.940 6.940 13 O -0.925 6.925 14 N -0.815 5.815 15 C 0.376 3.624 16 O -0.352 6.352 17 C -0.197 4.197 18 C -0.008 4.008 19 N -0.167 5.167 20 C 0.016 3.984 21 C -0.152 4.152 22 C -0.300 4.300 23 S 0.400 5.600 24 C -0.333 4.333 25 C 0.011 3.989 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.263 0.737 32 H 0.188 0.812 33 H 0.174 0.826 34 H 0.197 0.803 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 16.236 -22.330 3.965 27.892 hybrid contribution 0.583 0.856 -1.166 1.559 sum 16.819 -21.475 2.799 27.420 Atomic orbital electron populations 1.69948 1.06104 1.27363 1.49405 1.25060 0.94999 0.99539 0.94842 0.86504 0.79477 0.82409 0.78731 1.20069 1.21057 1.20033 1.20935 0.93073 0.89570 1.52392 0.91999 1.18995 0.92609 0.90249 0.99088 1.30344 1.13741 1.15934 1.10905 1.06810 0.74863 0.77207 0.74582 1.93603 1.70147 1.85242 1.45034 1.93605 1.70111 1.84296 1.44456 1.55415 1.49183 1.50561 1.26342 1.17693 0.80163 0.83131 0.81423 1.91016 1.69209 1.42635 1.32306 1.20746 1.00073 1.00946 0.97944 1.22892 0.93453 0.88344 0.96107 1.67606 1.03621 1.19370 1.26065 1.19307 0.95149 0.94441 0.89460 1.19662 0.95390 1.00544 0.99586 1.25514 1.04425 1.02626 0.97449 1.84480 1.26832 1.30295 1.18404 1.23585 1.04503 1.03904 1.01341 1.21087 0.88196 0.92339 0.97276 0.92432 0.94689 0.94523 0.85007 0.85868 0.73686 0.81246 0.82580 0.80258 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 10 C -0.57 -11.10 5.83 37.16 0.22 -10.89 16 11 S 2.57 45.10 5.11 -107.50 -0.55 44.55 16 12 O -0.95 -18.13 18.08 -57.54 -1.04 -19.17 16 13 O -0.93 -19.92 17.03 -64.81 -1.10 -21.02 16 14 N -1.05 -12.95 5.56 30.46 0.17 -12.78 16 15 C 0.59 7.81 7.51 -12.46 -0.09 7.71 16 16 O -0.48 -8.05 14.52 -11.91 -0.17 -8.22 16 17 C -0.19 -2.00 5.89 -104.87 -0.62 -2.61 16 18 C 0.16 1.51 10.69 -17.36 -0.19 1.32 16 19 N -0.46 -4.69 10.39 -11.01 -0.11 -4.81 16 20 C 0.15 1.45 6.97 -84.92 -0.59 0.85 16 21 C -0.12 -0.84 10.16 -40.61 -0.41 -1.25 16 22 C -0.16 -0.85 11.08 28.81 0.32 -0.53 16 23 S 0.14 0.92 23.29 -107.50 -2.50 -1.59 16 24 C -0.22 -2.03 6.49 -38.46 -0.25 -2.28 16 25 C 0.04 0.42 9.73 -38.64 -0.38 0.04 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.13 2.49 7.20 -51.92 -0.37 2.11 16 30 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 31 H 0.43 3.40 6.84 -34.47 -0.24 3.16 16 32 H 0.17 0.97 6.41 -52.49 -0.34 0.63 16 33 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.18 0.35 8.06 -52.48 -0.42 -0.07 16 35 H 0.16 1.51 7.72 -52.49 -0.41 1.10 16 LS Contribution 336.77 15.07 5.08 5.08 Total: -1.00 -37.36 336.77 -10.07 -47.44 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.01 Total: 0.15 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.54 Total: -20.17 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.79 Total: -43.29 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.32 Total: -48.41 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 46.02 SS G_CDS: -3.05 Total: 42.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.36 -10.07 -47.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.943 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds