Wall clock time and date at job start Sat Apr 11 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48503 * 109.47450 * 239.99959 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46855 * 120.00436 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.34777 * 119.99511 * 65.28308 * 14 11 10 16 16 O 1.21593 * 120.00264 * 359.71858 * 15 14 11 17 17 C 1.47563 * 119.99792 * 179.72162 * 15 14 11 18 18 C 1.40123 * 120.58888 * 359.97438 * 17 15 14 19 19 N 1.30610 * 121.17028 * 179.97438 * 18 17 15 20 20 C 1.34904 * 122.44944 * 359.97438 * 19 18 17 21 21 C 1.40618 * 128.46125 * 179.97438 * 20 19 18 22 22 C 1.32278 * 115.91011 * 180.02562 * 21 20 19 23 23 S 1.75499 * 110.84000 * 359.97438 * 22 21 20 24 24 C 1.40095 * 119.27332 * 0.02562 * 20 19 18 25 25 C 1.39371 * 119.74947 * 359.74685 * 24 20 19 26 26 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46912 * 60.00244 * 9 7 2 28 28 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 29 29 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 30 30 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 31 31 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 32 32 H 1.08001 * 119.41507 * 359.95130 * 18 17 15 33 33 H 1.07998 * 122.04109 * 359.97438 * 21 20 19 34 34 H 1.08005 * 124.57805 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.73405 * 180.26185 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.3447 -6.5166 1.0558 16 8 3.2237 -5.7735 2.0106 17 6 4.3942 -7.5539 1.0565 18 6 4.5443 -8.4171 -0.0371 19 7 5.4695 -9.3389 -0.0487 20 6 6.3279 -9.5158 0.9769 21 6 7.3630 -10.4599 1.0982 22 6 8.0593 -10.4130 2.2219 23 16 7.4656 -9.1380 3.2715 24 6 6.2320 -8.6859 2.1014 25 6 5.2590 -7.6890 2.1443 26 1 -0.4850 0.8402 -0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8725 -3.6047 0.8878 30 1 2.8712 -3.6040 -0.8922 31 1 2.6168 -6.9855 -0.7650 32 1 3.8829 -8.3187 -0.8852 33 1 7.5758 -11.1797 0.3217 34 1 8.8820 -11.0706 2.4610 35 1 5.1735 -7.0375 3.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776115627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:16 Heat of formation + Delta-G solvation = -79.656519 kcal Electronic energy + Delta-G solvation = -23704.044581 eV Core-core repulsion = 19919.801520 eV Total energy + Delta-G solvation = -3784.243061 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.06863 -40.71238 -38.32488 -37.25662 -36.84543 -35.96336 -35.74155 -33.78405 -33.17654 -31.10842 -27.65572 -26.53859 -25.10098 -23.75745 -23.45582 -22.00571 -20.86601 -20.18269 -19.33766 -18.55235 -18.13505 -17.77989 -17.40096 -17.21553 -16.75002 -16.54896 -16.44096 -16.15702 -15.52976 -15.19157 -15.08562 -14.51325 -14.46780 -14.11909 -13.87176 -13.76457 -13.67728 -13.38876 -13.27843 -12.93459 -12.87334 -12.84623 -12.36794 -12.26508 -12.15310 -12.09119 -11.84774 -11.71597 -11.69638 -11.10623 -10.68600 -10.64376 -9.95779 -9.10864 -8.26958 -6.40845 -1.12755 -1.03596 -0.17434 0.26098 0.64291 0.79499 1.28111 1.40422 1.44087 1.46886 1.52236 2.36700 2.49043 2.57386 2.76173 3.01923 3.06539 3.14231 3.44787 3.53160 3.70806 3.81311 3.96165 3.99538 4.05854 4.34892 4.59091 4.68232 4.70077 4.88472 5.02308 5.20757 5.23403 5.24667 5.53665 5.66801 6.04084 6.21048 6.55593 6.71551 7.28965 8.85168 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.002589 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.205627 B =10811.260775 C =11772.786275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.023 3.977 10 C -0.578 4.578 11 S 2.603 3.397 12 O -0.963 6.963 13 O -0.974 6.974 14 N -1.033 6.033 15 C 0.595 3.405 16 O -0.519 6.519 17 C -0.201 4.201 18 C 0.170 3.830 19 N -0.476 5.476 20 C 0.142 3.858 21 C -0.143 4.143 22 C -0.135 4.135 23 S 0.149 5.851 24 C -0.240 4.240 25 C 0.038 3.962 26 H 0.268 0.732 27 H 0.017 0.983 28 H 0.006 0.994 29 H 0.136 0.864 30 H 0.154 0.846 31 H 0.448 0.552 32 H 0.201 0.799 33 H 0.174 0.826 34 H 0.219 0.781 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.774 -24.137 2.037 31.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.092 0.908 9 C -0.016 4.016 10 C -0.712 4.712 11 S 2.701 3.299 12 O -0.954 6.954 13 O -0.964 6.964 14 N -0.799 5.799 15 C 0.384 3.616 16 O -0.394 6.394 17 C -0.212 4.212 18 C -0.003 4.003 19 N -0.184 5.184 20 C 0.008 3.992 21 C -0.172 4.172 22 C -0.272 4.272 23 S 0.414 5.586 24 C -0.357 4.357 25 C 0.008 3.992 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.154 0.846 30 H 0.172 0.828 31 H 0.290 0.710 32 H 0.217 0.783 33 H 0.192 0.808 34 H 0.235 0.765 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 19.229 -23.858 3.496 30.841 hybrid contribution -0.210 1.146 -0.967 1.514 sum 19.019 -22.712 2.529 29.731 Atomic orbital electron populations 1.70090 1.07973 1.28454 1.50636 1.26098 0.95900 1.03803 0.94298 0.85365 0.78166 0.77308 0.79419 1.18543 1.20784 1.19121 1.21449 0.93938 0.90747 1.51884 0.90792 1.18833 0.93452 0.92573 0.96791 1.30247 1.12915 1.15320 1.12682 1.05387 0.74490 0.76707 0.73269 1.93579 1.70947 1.85430 1.45405 1.93557 1.71617 1.84837 1.46353 1.54795 1.48067 1.49709 1.27353 1.18054 0.80079 0.82976 0.80535 1.91002 1.70276 1.44357 1.33763 1.20490 1.00084 1.01283 0.99324 1.23323 0.93389 0.87317 0.96257 1.67684 1.04263 1.19854 1.26594 1.19835 0.95395 0.94740 0.89224 1.19881 0.95381 1.00997 1.00979 1.26009 1.04015 1.01342 0.95843 1.84500 1.25598 1.30637 1.17904 1.23768 1.05326 1.04021 1.02556 1.21197 0.88350 0.92513 0.97130 0.92300 0.96471 0.97549 0.84618 0.82820 0.71016 0.78288 0.80828 0.76476 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.02 1.19 4.98 29.85 0.15 1.34 16 10 C -0.58 -22.54 5.83 71.98 0.42 -22.12 16 11 S 2.60 91.96 5.11 -56.49 -0.29 91.67 16 12 O -0.96 -36.47 18.08 -127.65 -2.31 -38.78 16 13 O -0.97 -42.60 17.03 -120.70 -2.06 -44.65 16 14 N -1.03 -24.37 5.56 -175.79 -0.98 -25.35 16 15 C 0.60 15.53 7.51 86.70 0.65 16.18 16 16 O -0.52 -17.74 14.52 12.43 0.18 -17.56 16 17 C -0.20 -4.16 5.89 -20.03 -0.12 -4.28 16 18 C 0.17 2.84 10.69 85.33 0.91 3.76 16 19 N -0.48 -8.95 10.39 -188.74 -1.96 -10.91 16 20 C 0.14 2.49 6.97 39.70 0.28 2.77 16 21 C -0.14 -1.58 10.16 21.79 0.22 -1.36 16 22 C -0.14 -0.93 11.08 66.76 0.74 -0.20 16 23 S 0.15 1.71 23.29 -56.49 -1.32 0.39 16 24 C -0.24 -4.22 6.49 22.99 0.15 -4.07 16 25 C 0.04 0.76 9.73 22.88 0.22 0.98 16 26 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.14 5.19 7.20 -2.39 -0.02 5.17 16 30 H 0.15 4.92 8.14 -2.39 -0.02 4.90 16 31 H 0.45 6.25 6.84 -96.74 -0.66 5.59 16 32 H 0.20 1.78 6.41 -2.91 -0.02 1.76 16 33 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.22 -0.23 8.06 -2.91 -0.02 -0.26 16 35 H 0.16 3.07 7.72 -2.91 -0.02 3.05 16 Total: -1.00 -83.08 336.77 -1.59 -84.67 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.50 Total: 8.25 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 4.32 Total: -36.82 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -2.65 Total: -92.86 kcal Atomic # 8 Polarization: -96.81 SS G_CDS: -4.18 Total: -101.00 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 93.66 SS G_CDS: -1.60 Total: 92.06 kcal Total: -83.08 -1.59 -84.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.013 kcal (2) G-P(sol) polarization free energy of solvation -83.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds