Wall clock time and date at job start Sat Apr 11 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99765 * 2 1 4 4 H 1.48498 * 109.46836 * 269.99880 * 3 2 1 5 5 H 1.48506 * 109.47295 * 29.99574 * 3 2 1 6 6 H 1.48492 * 109.47081 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99679 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00058 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46981 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.46883 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54279 * 68.38071 * 11 10 9 13 13 O 1.42100 * 110.54453 * 291.62509 * 11 10 9 14 14 N 1.65603 * 104.44574 * 180.02562 * 11 10 9 15 15 C 1.34774 * 120.00128 * 65.00313 * 14 11 10 16 16 O 1.21591 * 120.00248 * 0.02562 * 15 14 11 17 17 C 1.47520 * 119.99863 * 179.97438 * 15 14 11 18 18 C 1.40093 * 119.93330 * 0.02562 * 17 15 14 19 19 C 1.36295 * 120.38565 * 179.74169 * 18 17 15 20 20 C 1.39858 * 120.03847 * 0.23385 * 19 18 17 21 21 N 1.35812 * 133.51007 * 180.02562 * 20 19 18 22 22 C 1.30777 * 108.79664 * 180.02562 * 21 20 19 23 23 O 1.35106 * 124.92254 * 180.02562 * 22 21 20 24 24 O 1.34318 * 110.15660 * 359.97438 * 22 21 20 25 25 C 1.35313 * 108.12895 * 0.02562 * 24 22 21 26 26 C 1.38103 * 133.76963 * 179.97438 * 25 24 22 27 27 H 0.96995 * 120.00217 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47063 * 60.00080 * 9 7 2 29 29 H 1.08998 * 109.47216 * 300.00084 * 9 7 2 30 30 H 1.09006 * 109.47101 * 60.00242 * 10 9 7 31 31 H 1.08998 * 109.47356 * 300.00171 * 10 9 7 32 32 H 0.97003 * 119.99856 * 245.00178 * 14 11 10 33 33 H 1.08002 * 119.81069 * 0.02562 * 18 17 15 34 34 H 1.07996 * 119.98061 * 180.25695 * 19 18 17 35 35 H 0.96693 * 113.99948 * 359.97438 * 23 22 21 36 36 H 1.08005 * 120.18281 * 0.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 16 5.8356 -2.6364 0.0022 12 8 6.3343 -2.1451 1.2388 13 8 6.3343 -2.1470 -1.2352 14 7 6.2488 -4.2400 0.0028 15 6 5.9393 -5.0160 -1.0547 16 8 5.3571 -4.5387 -2.0095 17 6 6.3079 -6.4444 -1.0544 18 6 6.9792 -6.9929 0.0462 19 6 7.3195 -8.3126 0.0585 20 6 7.0034 -9.1274 -1.0335 21 7 7.2045 -10.4421 -1.3084 22 6 6.7075 -10.7066 -2.4888 23 8 6.7297 -11.9197 -3.0832 24 8 6.1709 -9.5977 -3.0241 25 6 6.3351 -8.5833 -2.1438 26 6 5.9925 -7.2455 -2.1531 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8753 -0.6803 -0.8888 30 1 3.6586 -3.1509 -0.8876 31 1 3.6579 -3.1497 0.8924 32 1 6.7137 -4.6208 0.7643 33 1 7.2244 -6.3674 0.8918 34 1 7.8332 -8.7296 0.9121 35 1 7.1561 -12.6085 -2.5553 36 1 5.4787 -6.8224 -3.0037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776119311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:18 Heat of formation + Delta-G solvation = -96.183342 kcal Electronic energy + Delta-G solvation = -26111.982391 eV Core-core repulsion = 21884.269802 eV Total energy + Delta-G solvation = -4227.712588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.89627 -40.60372 -38.99114 -37.96567 -36.86890 -35.81023 -35.15978 -34.70474 -33.97480 -31.51385 -31.38162 -30.15963 -26.04527 -25.10511 -24.30934 -22.69015 -22.04139 -21.34087 -19.80107 -19.45822 -19.27233 -18.41714 -17.88967 -17.81525 -17.03753 -16.60803 -15.98008 -15.68744 -15.35767 -15.15989 -15.06322 -14.55475 -14.39721 -14.33715 -14.27021 -13.70484 -13.43263 -13.04205 -12.83977 -12.52628 -12.16539 -11.96340 -11.90554 -11.79958 -11.64145 -11.31433 -11.25698 -11.16043 -11.01685 -10.62598 -10.44139 -10.13458 -9.66126 -9.49445 -9.36999 -8.88145 -8.66050 -6.16159 -4.17745 -0.18611 0.30247 0.58489 0.95939 1.54228 2.25473 2.49090 2.88075 3.15409 3.27452 3.34444 3.37609 3.72298 3.81939 3.95189 4.13825 4.32177 4.35936 4.44672 4.51593 4.65379 4.74280 4.98308 5.15049 5.32532 5.39423 5.44979 5.50700 5.57295 5.58614 5.83926 6.23706 6.24765 6.44515 6.78568 6.91340 6.96252 7.24123 7.53322 8.36296 8.84918 9.42811 10.96134 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.022228 B = 0.002448 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.344751 B =11432.864628 C =12130.844748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.568 4.568 11 S 2.564 3.436 12 O -0.950 6.950 13 O -0.935 6.935 14 N -1.053 6.053 15 C 0.586 3.414 16 O -0.479 6.479 17 C -0.127 4.127 18 C -0.071 4.071 19 C -0.077 4.077 20 C 0.082 3.918 21 N -0.528 5.528 22 C 0.464 3.536 23 O -0.410 6.410 24 O -0.194 6.194 25 C -0.011 4.011 26 C -0.004 4.004 27 H 0.267 0.733 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.428 0.572 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.444 0.556 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.955 -23.538 -0.144 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.703 4.703 11 S 2.664 3.336 12 O -0.941 6.941 13 O -0.925 6.925 14 N -0.815 5.815 15 C 0.373 3.627 16 O -0.351 6.351 17 C -0.132 4.132 18 C -0.091 4.091 19 C -0.096 4.096 20 C -0.030 4.030 21 N -0.279 5.279 22 C 0.215 3.785 23 O -0.212 6.212 24 O -0.087 6.087 25 C -0.060 4.060 26 C -0.024 4.024 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.265 0.735 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.304 0.696 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 17.006 -22.644 -1.080 28.340 hybrid contribution -0.046 0.098 0.209 0.236 sum 16.960 -22.546 -0.871 28.226 Atomic orbital electron populations 1.69878 1.06196 1.27277 1.49887 1.24979 0.94836 0.99157 0.94123 0.86919 0.80634 0.83669 0.79182 1.19611 1.20752 1.18630 1.20808 0.87575 0.95008 1.52377 0.90305 1.19439 1.00066 0.86962 0.98048 1.30184 1.18318 1.09994 1.11782 1.06760 0.80230 0.71963 0.74603 1.93606 1.79575 1.75922 1.44995 1.93613 1.78476 1.75971 1.44407 1.55310 1.66745 1.32737 1.26665 1.17784 0.77388 0.86194 0.81305 1.91024 1.37684 1.74165 1.32231 1.19448 1.04782 0.93167 0.95806 1.20940 0.95813 0.94954 0.97408 1.19901 1.01022 0.91814 0.96832 1.19708 0.98395 0.89286 0.95660 1.71206 1.28645 1.15303 1.12702 1.22356 0.88184 0.83722 0.84190 1.84678 1.77714 1.13343 1.45489 1.84416 1.66028 1.15873 1.42429 1.19712 1.06445 0.89917 0.89912 1.19909 0.96546 0.86958 0.98956 0.92346 0.94811 0.95064 0.84392 0.85255 0.73538 0.83614 0.83452 0.69560 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 8 H 0.08 2.31 7.99 -52.48 -0.42 1.90 16 9 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 10 C -0.57 -10.43 5.82 37.16 0.22 -10.21 16 11 S 2.56 42.02 5.11 -107.50 -0.55 41.47 16 12 O -0.95 -16.79 18.08 -57.54 -1.04 -17.83 16 13 O -0.93 -18.65 17.03 -64.80 -1.10 -19.75 16 14 N -1.05 -11.92 5.55 30.45 0.17 -11.75 16 15 C 0.59 7.31 7.50 -12.48 -0.09 7.22 16 16 O -0.48 -7.77 14.42 -11.87 -0.17 -7.94 16 17 C -0.13 -1.22 5.88 -104.92 -0.62 -1.84 16 18 C -0.07 -0.48 9.46 -39.59 -0.37 -0.86 16 19 C -0.08 -0.53 10.03 -39.68 -0.40 -0.93 16 20 C 0.08 0.76 7.23 -84.63 -0.61 0.15 16 21 N -0.53 -4.60 11.36 -12.73 -0.14 -4.75 16 22 C 0.46 3.70 9.54 52.31 0.50 4.20 16 23 O -0.41 -1.80 13.62 -40.32 -0.55 -2.35 16 24 O -0.19 -1.95 10.79 -20.50 -0.22 -2.17 16 25 C -0.01 -0.11 7.40 -38.76 -0.29 -0.40 16 26 C 0.00 -0.04 9.60 -39.13 -0.38 -0.42 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 29 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 30 H 0.14 2.52 7.19 -51.92 -0.37 2.14 16 31 H 0.13 2.04 8.14 -51.93 -0.42 1.61 16 32 H 0.43 2.96 6.79 -34.47 -0.23 2.72 16 33 H 0.15 0.50 6.36 -52.49 -0.33 0.17 16 34 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.44 -0.52 9.06 45.56 0.41 -0.11 16 36 H 0.16 1.55 7.64 -52.48 -0.40 1.15 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -39.13 334.09 -7.18 -46.31 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -2.13 Total: -0.59 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.59 Total: -16.16 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.80 Total: -42.76 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -3.09 Total: -50.04 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 42.02 SS G_CDS: -0.55 Total: 41.47 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -39.13 -7.18 -46.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.871 kcal (2) G-P(sol) polarization free energy of solvation -39.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds