Wall clock time and date at job start Sat Apr 11 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76192 * 103.00088 * 2 1 4 4 C 1.39091 * 120.00695 * 359.97438 * 3 2 1 5 5 C 1.38193 * 120.22120 * 180.02562 * 4 3 2 6 6 C 1.38026 * 120.24296 * 359.69431 * 5 4 3 7 7 C 1.39639 * 120.00970 * 0.55533 * 6 5 4 8 8 C 1.47746 * 120.11589 * 179.74377 * 7 6 5 9 9 O 1.21462 * 120.00102 * 179.72533 * 8 7 6 10 10 O 1.34705 * 119.99597 * 359.72365 * 8 7 6 11 11 C 1.45198 * 117.00016 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47256 * 180.02562 * 11 10 8 13 13 O 1.21287 * 120.00401 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99770 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99796 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00295 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00162 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00448 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99661 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46987 * 90.00538 * 19 17 15 21 21 H 1.48501 * 109.46776 * 210.00328 * 19 17 15 22 22 H 1.48494 * 109.47163 * 330.00035 * 19 17 15 23 23 C 1.38688 * 120.00858 * 180.02562 * 3 2 1 24 24 N 1.48026 * 120.11618 * 359.95365 * 23 3 2 25 25 O 1.21807 * 119.99854 * 270.02343 * 24 23 3 26 26 O 1.21800 * 119.99895 * 90.02399 * 24 23 3 27 27 H 1.09002 * 109.47094 * 300.00526 * 1 2 3 28 28 H 1.08997 * 109.47221 * 59.99956 * 1 2 3 29 29 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.88996 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.87859 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.99574 * 180.27679 * 6 5 4 33 33 H 1.08998 * 109.47176 * 300.00225 * 11 10 8 34 34 H 1.08997 * 109.47371 * 60.00225 * 11 10 8 35 35 H 0.96998 * 120.00652 * 0.02562 * 14 12 11 36 36 H 0.96994 * 120.00705 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1933 2.6655 -0.0005 5 6 1.4991 4.0131 -0.0011 6 6 2.8158 4.4272 0.0053 7 6 3.8448 3.4832 0.0006 8 6 5.2550 3.9239 0.0016 9 8 6.1484 3.1010 0.0026 10 8 5.5499 5.2383 0.0015 11 6 6.9565 5.5983 0.0032 12 6 7.0909 7.0993 0.0035 13 8 6.0989 7.7971 0.0019 14 7 8.3136 7.6663 0.0055 15 6 8.4358 9.0319 0.0052 16 1 7.5525 9.6531 0.0029 17 6 9.6964 9.6166 0.0067 18 7 9.8136 10.9254 0.0069 19 14 11.2244 8.5419 0.0098 20 1 11.6315 8.2563 -1.3894 21 1 12.3256 9.2495 0.7112 22 1 10.9307 7.2660 0.7103 23 6 3.5366 2.1224 -0.0005 24 7 4.6214 1.1152 -0.0001 25 8 5.0676 0.7012 1.0550 26 8 5.0678 0.7005 -1.0547 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.1610 2.3479 -0.0005 31 1 0.7050 4.7451 -0.0019 32 1 3.0503 5.4814 0.0094 33 1 7.4348 5.1909 0.8939 34 1 7.4371 5.1903 -0.8860 35 1 9.1070 7.1084 0.0064 36 1 10.6935 11.3336 0.0076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777074035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:39 Heat of formation + Delta-G solvation = -72.150639 kcal Electronic energy + Delta-G solvation = -26247.393316 eV Core-core repulsion = 22020.722863 eV Total energy + Delta-G solvation = -4226.670452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31634 -40.79422 -39.48217 -38.38926 -36.52063 -36.44961 -34.14278 -32.83492 -32.51359 -31.86291 -29.84139 -28.77983 -26.93325 -25.14703 -24.35349 -23.12220 -21.61999 -19.80468 -19.60337 -18.77336 -18.77187 -18.68911 -17.67811 -17.28267 -16.72081 -16.63471 -16.13787 -15.65929 -15.50720 -14.99898 -14.84116 -14.77331 -14.40099 -14.04545 -13.67610 -13.49769 -13.24793 -12.98096 -12.63896 -12.58020 -12.40187 -12.27537 -11.62200 -11.38317 -11.30787 -11.04436 -11.00633 -10.94286 -10.76926 -10.72340 -10.67870 -10.16706 -10.10093 -9.73595 -8.77271 -8.35484 -8.30459 -6.44530 -3.97933 -0.32005 0.05282 0.47220 0.52839 1.15196 1.50145 1.91206 2.11880 2.76461 2.96514 3.01507 3.10292 3.46597 3.75318 3.93450 4.00036 4.10134 4.27244 4.30243 4.31476 4.37687 4.48511 4.71916 4.91639 4.96745 5.04970 5.21566 5.26604 5.42965 5.43261 5.57362 5.71385 6.10205 6.23619 7.28185 7.42546 7.55534 7.93566 8.40623 8.77109 9.23447 9.56968 10.67348 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.002440 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.280574 B =11471.667647 C =12448.249349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.079 6.079 3 C -0.063 4.063 4 C -0.097 4.097 5 C -0.073 4.073 6 C -0.051 4.051 7 C -0.056 4.056 8 C 0.497 3.503 9 O -0.490 6.490 10 O -0.310 6.310 11 C 0.058 3.942 12 C 0.447 3.553 13 O -0.559 6.559 14 N -0.575 5.575 15 C -0.310 4.310 16 H 0.123 0.877 17 C 0.046 3.954 18 N -0.872 5.872 19 Si 0.879 3.121 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.267 1.267 23 C 0.039 3.961 24 N 0.029 4.971 25 O -0.124 6.124 26 O -0.124 6.124 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.172 0.828 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.374 0.626 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.122 -20.330 -0.026 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.166 5.834 3 C -0.178 4.178 4 C -0.121 4.121 5 C -0.093 4.093 6 C -0.072 4.072 7 C -0.059 4.059 8 C 0.340 3.660 9 O -0.378 6.378 10 O -0.224 6.224 11 C -0.019 4.019 12 C 0.232 3.768 13 O -0.441 6.441 14 N -0.215 5.215 15 C -0.438 4.438 16 H 0.141 0.859 17 C -0.158 4.158 18 N -0.511 5.511 19 Si 0.704 3.296 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.193 1.193 23 C -0.049 4.049 24 N 0.561 4.439 25 O -0.348 6.348 26 O -0.348 6.348 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.137 0.863 30 H 0.169 0.831 31 H 0.175 0.825 32 H 0.189 0.811 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.207 0.793 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.298 -20.420 -0.024 28.792 hybrid contribution 0.968 0.136 0.017 0.978 sum -19.330 -20.284 -0.007 28.019 Atomic orbital electron populations 1.23844 0.93190 1.08311 1.06388 1.86261 1.07989 0.98321 1.90849 1.21372 0.92633 1.00335 1.03412 1.21464 0.98399 0.92685 0.99559 1.21470 0.97062 0.95581 0.95144 1.21819 0.90910 1.01115 0.93385 1.18769 0.92660 0.90021 1.04459 1.20817 0.88729 0.82289 0.74192 1.90972 1.48239 1.53981 1.44658 1.86541 1.30081 1.23064 1.82668 1.22922 0.77849 0.96916 1.04238 1.19046 0.84709 0.87119 0.85935 1.90593 1.36535 1.63044 1.53962 1.42020 1.05355 1.08027 1.66085 1.19414 0.96202 0.79241 1.48928 0.85948 1.25047 0.97855 0.95826 0.97076 1.69604 1.24899 1.08677 1.47915 0.86682 0.83308 0.80369 0.79210 1.19301 1.19839 1.19281 1.20293 0.86723 0.87839 1.10058 1.43061 1.00163 0.99832 1.00843 1.94561 1.60246 1.59411 1.20592 1.94559 1.60239 1.59364 1.20649 0.88877 0.88872 0.86268 0.83086 0.82525 0.81055 0.88867 0.88850 0.79268 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.15 101.05 0.92 0.47 16 2 S -0.08 -0.68 21.97 -107.50 -2.36 -3.04 16 3 C -0.06 -0.62 6.11 -39.10 -0.24 -0.86 16 4 C -0.10 -0.60 9.36 -39.28 -0.37 -0.96 16 5 C -0.07 -0.44 10.02 -39.68 -0.40 -0.84 16 6 C -0.05 -0.49 9.61 -39.14 -0.38 -0.86 16 7 C -0.06 -0.73 5.87 -105.01 -0.62 -1.35 16 8 C 0.50 8.11 7.90 34.62 0.27 8.38 16 9 O -0.49 -9.11 14.24 -25.85 -0.37 -9.48 16 10 O -0.31 -5.37 9.00 -47.18 -0.42 -5.80 16 11 C 0.06 1.03 5.95 36.01 0.21 1.24 16 12 C 0.45 10.06 7.86 -10.98 -0.09 9.98 16 13 O -0.56 -14.72 16.08 -14.11 -0.23 -14.94 16 14 N -0.58 -13.42 5.09 -10.96 -0.06 -13.47 16 15 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 16 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 17 C 0.05 1.24 5.50 -17.47 -0.10 1.14 16 18 N -0.87 -24.72 13.96 55.50 0.77 -23.94 16 19 Si 0.88 18.91 27.74 -169.99 -4.71 14.19 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 23 C 0.04 0.51 6.16 -79.30 -0.49 0.03 16 24 N 0.03 0.46 1.82 34.28 0.06 0.52 16 25 O -0.12 -2.12 18.92 -33.26 -0.63 -2.75 16 26 O -0.12 -2.12 18.93 -33.21 -0.63 -2.74 16 27 H 0.09 0.17 7.74 -51.92 -0.40 -0.23 16 28 H 0.09 0.17 7.74 -51.93 -0.40 -0.23 16 29 H 0.12 0.21 8.14 -51.92 -0.42 -0.21 16 30 H 0.15 0.39 5.86 -52.49 -0.31 0.08 16 31 H 0.16 0.41 8.06 -52.49 -0.42 -0.02 16 32 H 0.17 1.60 7.60 -52.49 -0.40 1.20 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 36 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -36.02 345.00 -7.77 -43.80 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -2.99 Total: 4.76 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.41 Total: 7.70 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.78 Total: -36.89 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -2.28 Total: -35.71 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.19 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -2.36 Total: -3.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.02 -7.77 -43.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777074035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.354 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds