Wall clock time and date at job start Sat Apr 11 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76192 * 103.00088 * 2 1 4 4 C 1.39091 * 120.00695 * 359.97438 * 3 2 1 5 5 C 1.38193 * 120.22120 * 180.02562 * 4 3 2 6 6 C 1.38026 * 120.24296 * 359.69431 * 5 4 3 7 7 C 1.39639 * 120.00970 * 0.55533 * 6 5 4 8 8 C 1.47746 * 120.11589 * 179.74377 * 7 6 5 9 9 O 1.21462 * 120.00102 * 179.72533 * 8 7 6 10 10 O 1.34705 * 119.99597 * 359.72365 * 8 7 6 11 11 C 1.45198 * 117.00016 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47256 * 180.02562 * 11 10 8 13 13 O 1.21287 * 120.00401 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99770 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99796 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00295 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00162 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00448 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99661 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46987 * 90.00538 * 19 17 15 21 21 H 1.48501 * 109.46776 * 210.00328 * 19 17 15 22 22 H 1.48494 * 109.47163 * 330.00035 * 19 17 15 23 23 C 1.38688 * 120.00858 * 180.02562 * 3 2 1 24 24 N 1.48026 * 120.11618 * 359.95365 * 23 3 2 25 25 O 1.21807 * 119.99854 * 270.02343 * 24 23 3 26 26 O 1.21800 * 119.99895 * 90.02399 * 24 23 3 27 27 H 1.09002 * 109.47094 * 300.00526 * 1 2 3 28 28 H 1.08997 * 109.47221 * 59.99956 * 1 2 3 29 29 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.88996 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.87859 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.99574 * 180.27679 * 6 5 4 33 33 H 1.08998 * 109.47176 * 300.00225 * 11 10 8 34 34 H 1.08997 * 109.47371 * 60.00225 * 11 10 8 35 35 H 0.96998 * 120.00652 * 0.02562 * 14 12 11 36 36 H 0.96994 * 120.00705 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1933 2.6655 -0.0005 5 6 1.4991 4.0131 -0.0011 6 6 2.8158 4.4272 0.0053 7 6 3.8448 3.4832 0.0006 8 6 5.2550 3.9239 0.0016 9 8 6.1484 3.1010 0.0026 10 8 5.5499 5.2383 0.0015 11 6 6.9565 5.5983 0.0032 12 6 7.0909 7.0993 0.0035 13 8 6.0989 7.7971 0.0019 14 7 8.3136 7.6663 0.0055 15 6 8.4358 9.0319 0.0052 16 1 7.5525 9.6531 0.0029 17 6 9.6964 9.6166 0.0067 18 7 9.8136 10.9254 0.0069 19 14 11.2244 8.5419 0.0098 20 1 11.6315 8.2563 -1.3894 21 1 12.3256 9.2495 0.7112 22 1 10.9307 7.2660 0.7103 23 6 3.5366 2.1224 -0.0005 24 7 4.6214 1.1152 -0.0001 25 8 5.0676 0.7012 1.0550 26 8 5.0678 0.7005 -1.0547 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.1610 2.3479 -0.0005 31 1 0.7050 4.7451 -0.0019 32 1 3.0503 5.4814 0.0094 33 1 7.4348 5.1909 0.8939 34 1 7.4371 5.1903 -0.8860 35 1 9.1070 7.1084 0.0064 36 1 10.6935 11.3336 0.0076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777074035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:39 Heat of formation + Delta-G solvation = -95.539854 kcal Electronic energy + Delta-G solvation = -26248.407548 eV Core-core repulsion = 22020.722863 eV Total energy + Delta-G solvation = -4227.684685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.42371 -42.04285 -40.53897 -40.02223 -37.90740 -37.65790 -36.14160 -33.92231 -33.60631 -33.28569 -30.55968 -29.88288 -27.96768 -26.68196 -25.56826 -24.09566 -22.68506 -21.63023 -20.73008 -20.52676 -19.96269 -19.73620 -18.76762 -18.38989 -18.07025 -17.87156 -17.35590 -16.84996 -16.57820 -16.36382 -16.08036 -15.60518 -15.36382 -15.12193 -14.85006 -14.40648 -14.33202 -14.22695 -14.03691 -13.78857 -13.60167 -13.20247 -13.04850 -12.86907 -12.49591 -12.47131 -12.31802 -12.20892 -12.15108 -12.02935 -11.63387 -11.54678 -11.43125 -10.88027 -10.69498 -10.38336 -8.94458 -8.49455 -6.12568 -1.16477 -0.70601 -0.64343 -0.19225 0.24770 0.89331 0.89446 1.09903 1.27858 1.31020 1.41466 1.68200 1.97768 2.16792 2.52803 3.04465 3.08003 3.18025 3.36161 3.63336 3.70573 3.79238 3.90189 3.97822 3.98255 4.20939 4.21162 4.35974 4.67232 4.74216 4.79666 4.85969 5.00548 5.21033 5.42115 5.80626 6.05686 6.29117 6.43942 6.71855 7.20262 7.69266 8.66589 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.002440 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.280574 B =11471.667647 C =12448.249349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.145 6.145 3 C -0.060 4.060 4 C -0.073 4.073 5 C -0.048 4.048 6 C -0.050 4.050 7 C -0.085 4.085 8 C 0.499 3.501 9 O -0.522 6.522 10 O -0.320 6.320 11 C 0.066 3.934 12 C 0.452 3.548 13 O -0.602 6.602 14 N -0.574 5.574 15 C -0.332 4.332 16 H 0.066 0.934 17 C -0.004 4.004 18 N -0.921 5.921 19 Si 0.957 3.043 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.235 1.235 23 C 0.009 3.991 24 N 0.034 4.966 25 O -0.151 6.151 26 O -0.151 6.151 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.201 0.799 31 H 0.207 0.793 32 H 0.171 0.829 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.392 0.608 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.480 -22.047 0.007 31.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.099 5.901 3 C -0.175 4.175 4 C -0.097 4.097 5 C -0.067 4.067 6 C -0.071 4.071 7 C -0.088 4.088 8 C 0.343 3.657 9 O -0.412 6.412 10 O -0.234 6.234 11 C -0.011 4.011 12 C 0.239 3.761 13 O -0.487 6.487 14 N -0.215 5.215 15 C -0.461 4.461 16 H 0.084 0.916 17 C -0.205 4.205 18 N -0.560 5.560 19 Si 0.777 3.223 20 H -0.180 1.180 21 H -0.195 1.195 22 H -0.158 1.158 23 C -0.079 4.079 24 N 0.562 4.438 25 O -0.373 6.373 26 O -0.373 6.373 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.152 0.848 30 H 0.217 0.783 31 H 0.223 0.777 32 H 0.188 0.812 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.228 0.772 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.666 -22.174 0.010 31.708 hybrid contribution 1.383 0.706 0.003 1.553 sum -21.282 -21.468 0.012 30.229 Atomic orbital electron populations 1.24059 0.87415 1.10004 1.08471 1.86622 1.14322 0.98567 1.90568 1.21666 0.91760 1.01431 1.02623 1.22117 0.99546 0.91865 0.96165 1.22023 0.96356 0.96584 0.91753 1.21998 0.91793 1.00347 0.93002 1.18712 0.91473 0.90596 1.08058 1.21394 0.90110 0.81229 0.72943 1.90947 1.49503 1.54344 1.46428 1.86531 1.29629 1.24164 1.83060 1.22755 0.78938 0.92850 1.06551 1.19867 0.83736 0.89143 0.83402 1.90568 1.38011 1.64887 1.55212 1.41810 1.06537 1.06670 1.66510 1.19005 0.95054 0.80859 1.51170 0.91619 1.26034 1.01536 0.97376 0.95561 1.69757 1.26392 1.11147 1.48732 0.85477 0.77407 0.79282 0.80177 1.17960 1.19513 1.15829 1.20430 0.86828 0.86797 1.13853 1.43468 1.00389 0.99858 1.00092 1.94519 1.61420 1.60579 1.20828 1.94516 1.61406 1.60525 1.20883 0.86690 0.86682 0.84800 0.78262 0.77652 0.81162 0.86539 0.86434 0.77156 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.21 9.15 113.37 1.04 0.83 16 2 S -0.15 -2.28 21.97 -56.49 -1.24 -3.52 16 3 C -0.06 -1.06 6.11 22.58 0.14 -0.92 16 4 C -0.07 -0.54 9.36 22.46 0.21 -0.33 16 5 C -0.05 -0.35 10.02 22.21 0.22 -0.13 16 6 C -0.05 -0.85 9.61 22.56 0.22 -0.64 16 7 C -0.08 -2.21 5.87 -20.11 -0.12 -2.33 16 8 C 0.50 16.53 7.90 70.34 0.56 17.08 16 9 O -0.52 -19.94 14.24 26.28 0.37 -19.56 16 10 O -0.32 -11.13 9.00 -49.76 -0.45 -11.58 16 11 C 0.07 2.29 5.95 71.24 0.42 2.71 16 12 C 0.45 20.57 7.86 87.66 0.69 21.25 16 13 O -0.60 -32.81 16.08 15.74 0.25 -32.56 16 14 N -0.57 -26.83 5.09 -306.99 -1.56 -28.39 16 15 C -0.33 -18.94 10.16 84.04 0.85 -18.08 16 16 H 0.07 4.41 7.39 -2.91 -0.02 4.39 16 17 C 0.00 -0.24 5.50 84.93 0.47 0.23 16 18 N -0.92 -53.78 13.96 21.66 0.30 -53.47 16 19 Si 0.96 38.12 27.74 68.60 1.90 40.02 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 23 C 0.01 0.23 6.16 36.79 0.23 0.46 16 24 N 0.03 1.13 1.82 -45.46 -0.08 1.05 16 25 O -0.15 -5.48 18.92 22.51 0.43 -5.05 16 26 O -0.15 -5.47 18.93 22.47 0.43 -5.04 16 27 H 0.11 -0.25 7.74 -2.39 -0.02 -0.27 16 28 H 0.11 -0.25 7.74 -2.39 -0.02 -0.27 16 29 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.20 -0.44 5.86 -2.91 -0.02 -0.46 16 31 H 0.21 -0.40 8.06 -2.91 -0.02 -0.43 16 32 H 0.17 2.93 7.60 -2.91 -0.02 2.91 16 33 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 34 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.39 15.31 5.76 -92.71 -0.53 14.78 16 36 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -88.25 345.00 5.85 -82.40 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.58 Total: 15.58 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 4.92 Total: 20.14 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -1.34 Total: -80.81 kcal Atomic # 8 Polarization: -74.83 SS G_CDS: 1.03 Total: -73.80 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -1.24 Total: -3.52 kcal Total: -88.25 5.85 -82.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777074035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.140 kcal (2) G-P(sol) polarization free energy of solvation -88.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds