Wall clock time and date at job start Sat Apr 11 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99747 * 2 1 4 4 H 1.48502 * 109.46982 * 239.99752 * 3 2 1 5 5 H 1.48498 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47123 * 119.99631 * 3 2 1 7 7 C 1.38800 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00208 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99836 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47141 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46992 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47097 * 180.02562 * 12 11 10 14 14 C 1.34950 * 117.00339 * 180.02562 * 13 12 11 15 15 O 1.21669 * 119.99580 * 359.97438 * 14 13 12 16 16 C 1.41752 * 120.00206 * 179.97438 * 14 13 12 17 17 S 1.75811 * 125.47901 * 6.33070 * 16 14 13 18 18 C 1.70569 * 91.67155 * 180.02562 * 17 16 14 19 19 C 1.33626 * 111.17689 * 359.76561 * 18 17 16 20 20 C 1.37426 * 125.47958 * 186.35707 * 16 14 13 21 21 N 1.39958 * 123.48887 * 359.93766 * 20 16 14 22 22 C 1.35115 * 127.38868 * 173.71328 * 21 20 16 23 23 N 1.30735 * 107.26641 * 180.28043 * 22 21 20 24 24 N 1.28424 * 110.64375 * 359.59348 * 23 22 21 25 25 N 1.28940 * 110.21699 * 0.42042 * 24 23 22 26 26 H 0.96997 * 120.00309 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46569 * 60.00028 * 10 9 7 28 28 H 1.08999 * 109.47011 * 300.00486 * 10 9 7 29 29 H 1.09003 * 109.46689 * 60.00114 * 11 10 9 30 30 H 1.08996 * 109.47211 * 300.00321 * 11 10 9 31 31 H 1.08997 * 109.47100 * 60.00587 * 12 11 10 32 32 H 1.08996 * 109.47240 * 300.00101 * 12 11 10 33 33 H 1.08005 * 124.41407 * 180.02562 * 18 17 16 34 34 H 1.08002 * 122.45525 * 180.21733 * 19 18 17 35 35 H 1.07999 * 126.37108 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5161 -3.8914 0.0005 11 6 1.9796 -5.3242 0.0012 12 6 3.1517 -6.3076 0.0018 13 8 2.6507 -7.6458 0.0018 14 6 3.5619 -8.6412 0.0029 15 8 4.7498 -8.3784 0.0033 16 6 3.1350 -9.9930 0.0035 17 16 1.4709 -10.5376 -0.1549 18 6 1.9434 -12.1730 -0.0482 19 6 3.2677 -12.2848 0.0915 20 6 3.9553 -11.0884 0.1285 21 7 5.3447 -11.0004 0.2726 22 6 6.2097 -12.0091 0.5175 23 7 7.4064 -11.4868 0.5826 24 7 7.3581 -10.2184 0.3872 25 7 6.1396 -9.8434 0.1944 26 1 -0.4850 0.8400 -0.0004 27 1 3.1246 -3.7312 0.8905 28 1 3.1247 -3.7312 -0.8894 29 1 1.3707 -5.4845 -0.8886 30 1 1.3712 -5.4840 0.8913 31 1 3.7601 -6.1471 0.8918 32 1 3.7604 -6.1479 -0.8881 33 1 1.2616 -13.0095 -0.0924 34 1 3.7633 -13.2409 0.1728 35 1 5.9587 -13.0522 0.6412 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805397930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:03 Heat of formation + Delta-G solvation = 93.588633 kcal Electronic energy + Delta-G solvation = -23098.760192 eV Core-core repulsion = 19354.322357 eV Total energy + Delta-G solvation = -3744.437836 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.45553 -40.78743 -39.14487 -36.73108 -34.47302 -33.53015 -32.52975 -32.44323 -30.91258 -27.35905 -26.20927 -25.42411 -24.26729 -23.34711 -22.22503 -21.35931 -20.55837 -19.26745 -17.93753 -17.45309 -17.15030 -16.71140 -16.61616 -16.38250 -15.83572 -15.16253 -14.86431 -14.81748 -14.50107 -14.05709 -13.80224 -13.39008 -13.02249 -12.77544 -12.74584 -12.58567 -12.10945 -11.99192 -11.84927 -11.44625 -11.34833 -11.14582 -10.98711 -10.90399 -10.71243 -10.67646 -10.26920 -10.12041 -9.69127 -9.63953 -9.09654 -9.06787 -8.36985 -6.56884 -6.24750 -3.95889 -0.61437 0.51012 0.57614 1.02244 1.56309 1.63054 2.04004 2.45807 2.58689 3.22217 3.23632 3.27839 3.53387 3.63627 3.69560 4.13383 4.20315 4.40422 4.52891 4.75577 4.86536 5.01577 5.08590 5.10237 5.12815 5.20402 5.30030 5.39408 5.49209 5.77321 5.84774 5.93827 6.15175 6.42232 6.44092 6.66486 7.59098 7.59740 8.17503 8.34911 9.21680 10.83339 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.002112 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.189519 B =13257.234798 C =14673.735852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.096 4.096 12 C 0.074 3.926 13 O -0.351 6.351 14 C 0.511 3.489 15 O -0.445 6.445 16 C -0.261 4.261 17 S 0.344 5.656 18 C -0.218 4.218 19 C -0.159 4.159 20 C 0.198 3.802 21 N -0.331 5.331 22 C 0.218 3.782 23 N -0.329 5.329 24 N -0.060 5.060 25 N 0.018 4.982 26 H 0.268 0.732 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.188 0.812 34 H 0.160 0.840 35 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 -31.754 0.056 31.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.666 4.666 8 H 0.091 0.909 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.135 4.135 12 C -0.001 4.001 13 O -0.268 6.268 14 C 0.354 3.646 15 O -0.329 6.329 16 C -0.384 4.384 17 S 0.613 5.387 18 C -0.357 4.357 19 C -0.191 4.191 20 C 0.087 3.913 21 N -0.122 5.122 22 C -0.080 4.080 23 N -0.175 5.175 24 N -0.056 5.056 25 N 0.031 4.969 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.205 0.795 34 H 0.177 0.823 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.722 -29.868 -0.158 29.877 hybrid contribution 2.556 -0.176 0.205 2.570 sum 3.278 -30.043 0.046 30.222 Atomic orbital electron populations 1.70005 1.05917 1.27516 1.47109 1.25016 0.95101 0.99115 0.94507 0.86206 0.79228 0.81087 0.78925 1.19890 1.20800 1.19888 1.22656 0.94575 0.90655 1.58748 0.90870 1.84612 1.08829 0.99264 1.96898 1.23180 1.03423 0.96266 1.03430 1.21288 0.96325 0.91610 1.04235 1.22911 0.97968 0.76431 1.02777 1.86106 1.39548 1.16881 1.84309 1.18297 0.85223 0.85108 0.76003 1.91186 1.15554 1.83602 1.42522 1.22572 0.99997 0.95006 1.20790 1.83796 1.00155 0.93581 1.61151 1.25446 0.99648 1.05006 1.05573 1.19443 0.93809 0.97192 1.08668 1.16721 0.79219 0.93192 1.02179 1.48983 1.06345 1.07853 1.49030 1.27547 0.85341 0.97830 0.97244 1.74468 1.19778 1.02407 1.20845 1.78242 1.13188 1.04279 1.09929 1.84022 0.94990 1.01073 1.16832 0.92204 0.91700 0.91677 0.90350 0.90374 0.91197 0.91150 0.79462 0.82251 0.74665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.84 9.50 30.94 0.29 -14.54 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.12 -3.21 21.44 -107.50 -2.30 -5.52 16 10 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 11 C -0.10 -1.55 5.59 -26.73 -0.15 -1.70 16 12 C 0.07 1.08 5.38 37.16 0.20 1.28 16 13 O -0.35 -4.75 9.88 -41.18 -0.41 -5.15 16 14 C 0.51 6.86 7.72 32.07 0.25 7.11 16 15 O -0.44 -7.23 12.00 -19.40 -0.23 -7.46 16 16 C -0.26 -2.55 6.29 -38.54 -0.24 -2.79 16 17 S 0.34 1.88 22.83 -107.50 -2.45 -0.57 16 18 C -0.22 -0.58 10.90 29.12 0.32 -0.27 16 19 C -0.16 -0.61 9.63 -41.27 -0.40 -1.00 16 20 C 0.20 1.64 6.74 -84.52 -0.57 1.07 16 21 N -0.33 -3.48 3.84 -12.32 -0.05 -3.53 16 22 C 0.22 1.69 12.32 -90.11 -1.11 0.58 16 23 N -0.33 -3.93 12.15 29.65 0.36 -3.57 16 24 N -0.06 -0.91 13.39 60.35 0.81 -0.10 16 25 N 0.02 0.27 9.24 60.35 0.56 0.82 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 28 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 33 H 0.19 -0.12 8.06 -52.48 -0.42 -0.54 16 34 H 0.16 0.05 7.50 -52.49 -0.39 -0.34 16 35 H 0.24 0.29 7.61 -52.49 -0.40 -0.11 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -37.02 342.19 -7.44 -44.47 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -3.29 Total: -5.60 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.30 Total: -10.39 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 2.41 Total: -31.51 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.64 Total: -12.61 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -4.76 Total: -6.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.02 -7.44 -44.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805397930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.058 kcal (2) G-P(sol) polarization free energy of solvation -37.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds