Wall clock time and date at job start Sat Apr 11 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00202 * 2 1 4 4 H 1.48505 * 109.46907 * 269.99784 * 3 2 1 5 5 H 1.48497 * 109.47313 * 29.99784 * 3 2 1 6 6 H 1.48499 * 109.47306 * 149.99963 * 3 2 1 7 7 C 1.37879 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00248 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47391 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47265 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54741 * 68.37582 * 11 10 9 13 13 O 1.42100 * 110.54104 * 291.62314 * 11 10 9 14 14 N 1.65604 * 104.45038 * 179.97438 * 11 10 9 15 15 C 1.34772 * 119.99950 * 64.99515 * 14 11 10 16 16 O 1.21574 * 120.00313 * 0.02562 * 15 14 11 17 17 C 1.47714 * 120.00048 * 180.02562 * 15 14 11 18 18 C 1.39997 * 119.96267 * 359.97438 * 17 15 14 19 19 C 1.36605 * 120.45938 * 179.97438 * 18 17 15 20 20 C 1.38798 * 120.21385 * 0.02562 * 19 18 17 21 21 O 1.35180 * 133.65637 * 180.02562 * 20 19 18 22 22 C 1.34393 * 108.24459 * 179.97438 * 21 20 19 23 23 O 1.35184 * 124.90565 * 180.02562 * 22 21 20 24 24 N 1.30586 * 110.18644 * 359.97438 * 22 21 20 25 25 C 1.36217 * 108.67672 * 0.02562 * 24 22 21 26 26 C 1.39215 * 133.66329 * 180.02562 * 25 24 22 27 27 H 0.97004 * 119.99818 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47297 * 59.99911 * 9 7 2 29 29 H 1.09000 * 109.47080 * 300.00113 * 9 7 2 30 30 H 1.08997 * 109.47605 * 59.99641 * 10 9 7 31 31 H 1.09006 * 109.47066 * 299.99677 * 10 9 7 32 32 H 0.97001 * 119.99729 * 244.99990 * 14 11 10 33 33 H 1.08001 * 119.77252 * 0.02562 * 18 17 15 34 34 H 1.08004 * 119.89392 * 180.02562 * 19 18 17 35 35 H 0.96696 * 113.99815 * 359.96660 * 23 22 21 36 36 H 1.08002 * 120.26603 * 359.69353 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2330 -0.0002 12 8 0.6645 -5.4194 -1.2374 13 8 0.6637 -5.4200 1.2365 14 7 2.5203 -6.3928 -0.0009 15 6 3.3468 -6.5130 1.0568 16 8 3.2244 -5.7705 2.0116 17 6 4.4016 -7.5471 1.0560 18 6 4.5417 -8.4022 -0.0436 19 6 5.5140 -9.3617 -0.0553 20 6 6.3736 -9.4982 1.0258 21 8 7.4046 -10.3286 1.2992 22 6 7.8896 -10.0121 2.5119 23 8 8.9276 -10.6328 3.1161 24 7 7.2141 -9.0177 3.0219 25 6 6.2465 -8.6484 2.1371 26 6 5.2559 -7.6703 2.1489 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8719 -3.6044 0.8904 31 1 2.8718 -3.6044 -0.8895 32 1 2.6178 -6.9854 -0.7626 33 1 3.8770 -8.3020 -0.8889 34 1 5.6141 -10.0162 -0.9086 35 1 9.3137 -11.3504 2.5955 36 1 5.1480 -7.0151 3.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805909982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:06 Heat of formation + Delta-G solvation = -141.035468 kcal Electronic energy + Delta-G solvation = -26050.676444 eV Core-core repulsion = 21821.018922 eV Total energy + Delta-G solvation = -4229.657523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.50042 -41.56265 -39.50180 -38.51050 -38.18482 -37.22079 -36.12797 -35.91252 -35.58639 -33.15994 -32.10716 -30.68599 -27.63735 -26.16895 -24.56724 -23.68617 -23.23640 -22.90727 -21.03851 -20.73832 -19.72204 -19.13579 -18.84918 -18.41314 -18.34292 -17.35634 -17.18653 -16.62199 -16.54550 -16.38209 -16.27374 -15.97194 -15.20983 -15.18311 -15.09251 -14.82916 -14.48399 -14.23133 -13.82398 -13.74194 -13.64978 -13.35219 -13.24045 -12.93734 -12.83337 -12.79745 -12.32285 -12.28385 -12.23449 -12.05336 -11.78183 -11.68250 -11.55584 -11.07084 -10.63911 -10.09401 -9.52084 -8.26133 -6.39586 -1.01868 -0.61964 -0.38744 0.75406 1.11885 1.29711 1.40446 1.40956 1.43162 1.54313 1.96908 2.37535 2.45114 2.60010 2.92116 3.07410 3.18255 3.21873 3.70176 3.73094 3.78554 3.92214 4.01257 4.06338 4.09086 4.49531 4.72404 4.78069 4.91681 4.95882 4.98019 5.25074 5.25598 5.28353 5.65281 5.68460 5.77111 6.05771 6.31518 6.63638 6.73051 7.30099 8.86143 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.002466 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.206197 B =11352.967881 C =12356.100615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.003 4.003 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.022 3.978 10 C -0.580 4.580 11 S 2.605 3.395 12 O -0.963 6.963 13 O -0.976 6.976 14 N -1.030 6.030 15 C 0.586 3.414 16 O -0.523 6.523 17 C -0.135 4.135 18 C -0.054 4.054 19 C -0.068 4.068 20 C 0.028 3.972 21 O -0.230 6.230 22 C 0.455 3.545 23 O -0.383 6.383 24 N -0.520 5.520 25 C 0.016 3.984 26 C -0.014 4.014 27 H 0.268 0.732 28 H 0.018 0.982 29 H 0.005 0.995 30 H 0.133 0.867 31 H 0.155 0.845 32 H 0.450 0.550 33 H 0.190 0.810 34 H 0.189 0.811 35 H 0.453 0.547 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.621 -26.910 -3.923 32.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.578 4.578 8 H 0.091 0.909 9 C -0.017 4.017 10 C -0.713 4.713 11 S 2.703 3.297 12 O -0.953 6.953 13 O -0.966 6.966 14 N -0.797 5.797 15 C 0.376 3.624 16 O -0.397 6.397 17 C -0.142 4.142 18 C -0.073 4.073 19 C -0.086 4.086 20 C -0.022 4.022 21 O -0.126 6.126 22 C 0.206 3.794 23 O -0.188 6.188 24 N -0.268 5.268 25 C -0.094 4.094 26 C -0.034 4.034 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.023 0.977 30 H 0.152 0.848 31 H 0.173 0.827 32 H 0.292 0.708 33 H 0.207 0.793 34 H 0.207 0.793 35 H 0.317 0.683 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.583 -25.968 -2.193 31.437 hybrid contribution 0.825 0.302 -0.736 1.146 sum 18.408 -25.666 -2.929 31.720 Atomic orbital electron populations 1.70092 1.07937 1.28349 1.50764 1.26095 0.95907 1.03783 0.94367 0.85314 0.78499 0.77689 0.78770 1.19162 1.20828 1.18616 1.21478 0.93916 0.90786 1.51662 0.90864 1.18832 0.93472 0.92617 0.96774 1.30256 1.12924 1.15540 1.12626 1.05302 0.74493 0.76665 0.73225 1.93574 1.71011 1.85420 1.45284 1.93559 1.71642 1.84822 1.46552 1.54740 1.47846 1.49657 1.27481 1.18364 0.80405 0.83230 0.80440 1.91010 1.70399 1.44397 1.33934 1.19394 0.97756 0.99428 0.97579 1.21290 0.97184 0.91592 0.97196 1.19973 0.92085 1.00196 0.96336 1.20519 0.90960 0.92012 0.98715 1.84507 1.41448 1.52217 1.34418 1.23073 0.88830 0.88899 0.78642 1.85229 1.39262 1.51990 1.42289 1.70862 1.10569 1.14856 1.30472 1.19506 0.97870 1.00053 0.92010 1.20336 0.90293 0.94563 0.98201 0.92330 0.96368 0.97655 0.84843 0.82731 0.70777 0.79264 0.79347 0.68324 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.02 1.17 4.98 29.85 0.15 1.31 16 10 C -0.58 -22.56 5.82 71.98 0.42 -22.14 16 11 S 2.60 90.24 5.11 -56.49 -0.29 89.95 16 12 O -0.96 -35.31 18.08 -127.65 -2.31 -37.62 16 13 O -0.98 -42.60 17.04 -120.72 -2.06 -44.66 16 14 N -1.03 -22.74 5.55 -175.69 -0.98 -23.71 16 15 C 0.59 14.98 7.50 86.75 0.65 15.63 16 16 O -0.52 -18.42 14.43 12.41 0.18 -18.24 16 17 C -0.14 -2.55 5.87 -20.10 -0.12 -2.67 16 18 C -0.05 -0.51 9.47 22.31 0.21 -0.30 16 19 C -0.07 -0.54 9.99 22.02 0.22 -0.32 16 20 C 0.03 0.42 7.42 22.95 0.17 0.59 16 21 O -0.23 -2.84 10.78 10.05 0.11 -2.73 16 22 C 0.46 6.76 9.53 130.43 1.24 8.01 16 23 O -0.38 -2.64 13.62 -62.37 -0.85 -3.49 16 24 N -0.52 -12.03 11.38 -422.83 -4.81 -16.84 16 25 C 0.02 0.34 7.22 39.24 0.28 0.62 16 26 C -0.01 -0.31 9.64 22.75 0.22 -0.09 16 27 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 28 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.13 5.18 7.19 -2.39 -0.02 5.16 16 31 H 0.15 4.87 8.14 -2.39 -0.02 4.85 16 32 H 0.45 5.01 6.79 -96.74 -0.66 4.35 16 33 H 0.19 0.15 6.37 -2.91 -0.02 0.13 16 34 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 35 H 0.45 -3.39 9.06 -74.06 -0.67 -4.06 16 36 H 0.14 3.54 7.64 -2.91 -0.02 3.51 16 Total: -1.00 -92.27 337.75 -4.69 -96.96 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -0.14 Total: 0.31 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 4.14 Total: -29.23 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -5.50 Total: -97.25 kcal Atomic # 8 Polarization: -101.82 SS G_CDS: -4.93 Total: -106.74 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 90.24 SS G_CDS: -0.29 Total: 89.95 kcal Total: -92.27 -4.69 -96.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805909982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.078 kcal (2) G-P(sol) polarization free energy of solvation -92.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds