Wall clock time and date at job start Sat Apr 11 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00050 * 2 1 4 4 H 1.48498 * 109.46852 * 269.99557 * 3 2 1 5 5 H 1.48493 * 109.47273 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.46935 * 149.99831 * 3 2 1 7 7 C 1.37880 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99891 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47223 * 179.97438 * 9 7 2 11 11 O 1.42100 * 110.54680 * 68.37148 * 10 9 7 12 12 O 1.42102 * 110.53817 * 291.62163 * 10 9 7 13 13 N 1.65601 * 104.45151 * 179.97438 * 10 9 7 14 14 C 1.34779 * 120.00106 * 64.99441 * 13 10 9 15 15 O 1.21282 * 119.99926 * 0.02562 * 14 13 10 16 16 C 1.50699 * 120.00033 * 180.02562 * 14 13 10 17 17 C 1.50706 * 109.46817 * 180.02562 * 16 14 13 18 18 N 1.28731 * 121.08367 * 269.71359 * 17 16 14 19 19 S 1.69387 * 108.98238 * 179.90325 * 18 17 16 20 20 C 1.76510 * 96.12180 * 0.31690 * 19 18 17 21 21 C 1.38783 * 133.55961 * 179.83069 * 20 19 18 22 22 C 1.36720 * 119.75896 * 179.97438 * 21 20 19 23 23 C 1.38969 * 120.15129 * 0.02562 * 22 21 20 24 24 C 1.36039 * 121.16233 * 0.02562 * 23 22 21 25 25 C 1.40807 * 105.51908 * 359.82391 * 20 19 18 26 26 H 0.96996 * 119.99460 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47482 * 59.99440 * 9 7 2 28 28 H 1.09010 * 109.47083 * 299.99718 * 9 7 2 29 29 H 0.96996 * 120.00044 * 245.00192 * 13 10 9 30 30 H 1.09000 * 109.46670 * 60.00406 * 16 14 13 31 31 H 1.09000 * 109.47247 * 300.00119 * 16 14 13 32 32 H 1.07999 * 120.12033 * 359.97438 * 21 20 19 33 33 H 1.08001 * 119.92056 * 179.97438 * 22 21 20 34 34 H 1.07995 * 119.41818 * 179.97438 * 23 22 21 35 35 H 1.07997 * 119.89977 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.1267 -3.9383 1.2375 12 8 3.1265 -3.9383 -1.2365 13 7 1.4795 -5.2341 0.0013 14 6 0.6883 -5.5032 -1.0562 15 8 0.6727 -4.7523 -2.0085 16 6 -0.1770 -6.7370 -1.0553 17 6 -0.9570 -6.8045 -2.3430 18 7 -2.1214 -6.2649 -2.4438 19 16 -2.7132 -6.5200 -4.0103 20 6 -1.3152 -7.4256 -4.5945 21 6 -0.9979 -8.0158 -5.8098 22 6 0.1966 -8.6642 -5.9579 23 6 1.0900 -8.7329 -4.8956 24 6 0.8008 -8.1631 -3.6946 25 6 -0.4231 -7.4844 -3.5067 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 1.4921 -5.8348 0.7627 30 1 -0.8679 -6.6955 -0.2133 31 1 0.4526 -7.6223 -0.9655 32 1 -1.6920 -7.9631 -6.6355 33 1 0.4461 -9.1248 -6.9024 34 1 2.0300 -9.2485 -5.0256 35 1 1.5099 -8.2292 -2.8827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821047070.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:32 Heat of formation + Delta-G solvation = -91.885722 kcal Electronic energy + Delta-G solvation = -24286.412718 eV Core-core repulsion = 20501.639359 eV Total energy + Delta-G solvation = -3784.773359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63788 -40.53266 -38.14824 -37.76687 -37.07723 -35.68031 -35.44508 -32.43193 -31.50613 -31.23963 -31.08568 -25.68681 -24.94917 -23.97891 -23.20566 -21.26735 -20.74401 -19.57794 -19.33561 -18.82617 -18.37915 -17.60278 -17.37840 -16.67279 -16.55022 -16.38528 -16.10462 -16.06769 -15.84896 -15.07326 -14.90897 -14.56649 -14.50786 -14.16478 -13.68060 -13.52494 -13.43221 -13.22265 -13.12416 -13.10684 -12.94099 -12.77584 -12.61052 -12.57291 -12.09997 -11.87090 -11.79770 -11.64229 -11.52122 -11.10791 -10.83770 -10.82485 -9.97485 -8.96875 -8.45670 -6.65722 -0.80156 -0.52489 0.19642 0.35379 0.68852 0.96689 1.00361 1.34721 1.37477 1.49258 1.63323 2.27246 2.62908 2.72694 2.88345 3.11332 3.13850 3.36335 3.47466 3.83267 4.01304 4.05187 4.17624 4.28309 4.37217 4.46436 4.61711 4.63354 4.71576 4.92748 5.02294 5.25330 5.25803 5.42127 5.50734 5.63972 5.71857 5.84275 6.40690 6.46064 7.06597 8.67296 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.003303 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.424287 B = 8476.233030 C = 9196.870035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.427 4.427 10 S 2.604 3.396 11 O -0.974 6.974 12 O -0.981 6.981 13 N -1.036 6.036 14 C 0.537 3.463 15 O -0.529 6.529 16 C -0.073 4.073 17 C 0.166 3.834 18 N -0.464 5.464 19 S 0.161 5.839 20 C -0.150 4.150 21 C -0.094 4.094 22 C -0.071 4.071 23 C -0.121 4.121 24 C -0.060 4.060 25 C -0.149 4.149 26 H 0.274 0.726 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.452 0.548 30 H 0.159 0.841 31 H 0.180 0.820 32 H 0.152 0.848 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -23.430 -6.962 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.181 4.181 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.608 4.608 8 H 0.089 0.911 9 C -0.561 4.561 10 S 2.703 3.297 11 O -0.965 6.965 12 O -0.971 6.971 13 N -0.803 5.803 14 C 0.323 3.677 15 O -0.403 6.403 16 C -0.119 4.119 17 C -0.024 4.024 18 N -0.276 5.276 19 S 0.317 5.683 20 C -0.270 4.270 21 C -0.117 4.117 22 C -0.094 4.094 23 C -0.141 4.141 24 C -0.082 4.082 25 C -0.160 4.160 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.293 0.707 30 H 0.177 0.823 31 H 0.198 0.802 32 H 0.170 0.830 33 H 0.190 0.810 34 H 0.184 0.816 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.076 -21.721 -7.458 23.171 hybrid contribution 0.758 0.501 0.408 0.996 sum -2.318 -21.221 -7.049 22.481 Atomic orbital electron populations 1.70058 1.07792 1.28962 1.47815 1.25935 0.95980 1.03479 0.92677 0.85392 0.79113 0.77239 0.79243 1.19255 1.19121 1.17888 1.20751 0.93180 0.90391 1.56432 0.91144 1.27704 1.10933 1.11346 1.06101 1.05306 0.75926 0.75458 0.73010 1.93509 1.71203 1.86265 1.45504 1.93492 1.71487 1.85819 1.46351 1.54842 1.55224 1.42608 1.27607 1.20987 0.78427 0.87958 0.80312 1.90960 1.64453 1.50277 1.34568 1.20863 0.98517 0.97363 0.95140 1.22291 0.90791 0.92948 0.96391 1.75678 1.15192 1.22532 1.14184 1.84693 1.22625 1.55903 1.05097 1.23741 0.99307 1.04233 0.99690 1.20392 0.99173 0.98007 0.94083 1.21563 0.91743 0.95562 1.00508 1.21268 1.01344 0.99438 0.92039 1.21102 0.92920 0.94188 0.99943 1.20347 0.98778 1.04781 0.92104 0.91708 0.90992 0.89699 0.70711 0.82321 0.80228 0.83028 0.81020 0.81579 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.38 13.29 21.45 0.28 -54.09 16 2 C 0.02 1.29 5.46 84.66 0.46 1.75 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.57 -33.01 9.13 25.60 0.23 -32.78 16 8 H 0.07 3.95 7.71 -2.91 -0.02 3.93 16 9 C -0.43 -22.20 5.64 71.24 0.40 -21.79 16 10 S 2.60 110.38 5.03 -56.49 -0.28 110.09 16 11 O -0.97 -42.41 18.08 -127.65 -2.31 -44.72 16 12 O -0.98 -48.11 17.04 -120.72 -2.06 -50.16 16 13 N -1.04 -29.38 5.60 -173.53 -0.97 -30.35 16 14 C 0.54 16.44 7.56 87.66 0.66 17.10 16 15 O -0.53 -22.70 14.14 13.33 0.19 -22.51 16 16 C -0.07 -1.41 5.98 29.10 0.17 -1.24 16 17 C 0.17 4.49 5.37 44.74 0.24 4.73 16 18 N -0.46 -14.86 11.84 -46.34 -0.55 -15.41 16 19 S 0.16 4.59 23.86 -56.49 -1.35 3.24 16 20 C -0.15 -3.69 6.71 23.03 0.15 -3.54 16 21 C -0.09 -1.64 10.02 22.04 0.22 -1.42 16 22 C -0.07 -0.89 10.01 22.09 0.22 -0.67 16 23 C -0.12 -1.59 9.92 21.93 0.22 -1.37 16 24 C -0.06 -1.05 9.72 22.49 0.22 -0.84 16 25 C -0.15 -3.66 6.04 -20.20 -0.12 -3.78 16 26 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.07 4.07 7.19 -2.39 -0.02 4.06 16 28 H 0.08 4.28 8.14 -2.38 -0.02 4.26 16 29 H 0.45 7.54 8.79 -96.75 -0.85 6.69 16 30 H 0.16 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.18 1.44 7.54 -2.39 -0.02 1.42 16 32 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 34 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.15 1.89 7.64 -2.91 -0.02 1.86 16 Total: -1.00 -89.77 338.92 -1.62 -91.39 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.31 Total: 10.37 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 3.09 Total: -43.83 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -1.24 Total: -99.86 kcal Atomic # 8 Polarization: -113.21 SS G_CDS: -4.18 Total: -117.39 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 114.97 SS G_CDS: -1.63 Total: 113.34 kcal Total: -89.77 -1.62 -91.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821047070.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.499 kcal (2) G-P(sol) polarization free energy of solvation -89.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds