Wall clock time and date at job start Sat Apr 11 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28432 * 125.18879 * 2 1 4 4 C 1.30848 * 110.96855 * 179.75434 * 3 2 1 5 5 C 1.39774 * 107.87043 * 0.41800 * 4 3 2 6 6 Br 1.89100 * 127.33196 * 179.86071 * 5 4 3 7 7 C 1.36714 * 125.18696 * 180.02562 * 2 1 3 8 8 C 1.47063 * 126.89581 * 359.97438 * 7 2 1 9 9 O 1.21647 * 119.99889 * 258.97557 * 8 7 2 10 10 N 1.34770 * 120.00161 * 78.98565 * 8 7 2 11 11 C 1.46503 * 120.00272 * 185.37283 * 10 8 7 12 12 C 1.50702 * 109.46788 * 89.99460 * 11 10 8 13 13 H 1.07994 * 120.00093 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99453 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00290 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99580 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47303 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47366 * 120.00099 * 16 14 12 19 19 H 1.48506 * 109.46992 * 240.00331 * 16 14 12 20 20 C 1.46497 * 120.00144 * 5.37366 * 10 8 7 21 21 C 1.52999 * 109.47267 * 86.75301 * 20 10 8 22 22 C 1.47201 * 109.46989 * 184.90315 * 21 20 10 23 23 N 5.54018 * 107.49311 * 257.72332 * 2 1 3 24 24 H 1.09003 * 109.47631 * 274.86311 * 1 2 3 25 25 H 1.09004 * 109.47046 * 34.86838 * 1 2 3 26 26 H 1.09001 * 109.47355 * 154.86529 * 1 2 3 27 27 H 1.08006 * 126.06306 * 180.28052 * 4 3 2 28 28 H 1.08994 * 109.47602 * 209.99998 * 11 10 8 29 29 H 1.09004 * 109.46901 * 330.00452 * 11 10 8 30 30 H 0.97001 * 119.99694 * 179.97438 * 15 14 12 31 31 H 1.08997 * 109.47226 * 206.75714 * 20 10 8 32 32 H 1.09006 * 109.46858 * 326.75779 * 20 10 8 33 33 H 1.08997 * 109.47115 * 304.90138 * 21 20 10 34 34 H 1.09000 * 109.47001 * 64.90216 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2050 1.0496 0.0000 4 6 3.4734 0.7282 0.0052 5 6 3.5624 -0.6667 -0.0007 6 35 5.1360 -1.7154 -0.0009 7 6 2.2527 -1.1173 -0.0005 8 6 1.8003 -2.5166 -0.0006 9 8 1.8053 -3.1575 1.0333 10 7 1.3804 -3.0890 -1.1462 11 6 0.8197 -4.4424 -1.1263 12 6 -0.6703 -4.3657 -0.9138 13 1 -1.1514 -3.4050 -0.8049 14 6 -1.4191 -5.5221 -0.8584 15 7 -0.8330 -6.6920 -0.9905 16 14 -3.2661 -5.4270 -0.5957 17 1 -3.6768 -4.0048 -0.4780 18 1 -3.9629 -6.0490 -1.7501 19 1 -3.6269 -6.1516 0.6493 20 6 1.4846 -2.3579 -2.4114 21 6 2.8691 -2.5879 -3.0208 22 6 3.0163 -1.7614 -4.2300 23 7 3.1303 -1.1235 -5.1631 24 1 -0.3634 0.0871 1.0240 25 1 -0.3633 0.8432 -0.5875 26 1 -0.3634 -0.9304 -0.4365 27 1 4.3042 1.4183 0.0107 28 1 1.0264 -4.9353 -2.0761 29 1 1.2735 -5.0117 -0.3151 30 1 -1.3598 -7.5055 -0.9512 31 1 0.7201 -2.7150 -3.1014 32 1 1.3404 -1.2930 -2.2286 33 1 3.6353 -2.3116 -2.2964 34 1 2.9801 -3.6398 -3.2838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822116305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:35 Heat of formation + Delta-G solvation = 78.947089 kcal Electronic energy + Delta-G solvation = -21713.111058 eV Core-core repulsion = 18308.814054 eV Total energy + Delta-G solvation = -3404.297004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.63684 -39.17539 -36.89609 -35.41879 -33.72932 -33.06503 -31.80385 -30.98554 -29.88918 -27.44889 -27.00097 -24.34065 -23.84153 -21.64754 -21.43159 -19.03903 -17.88967 -17.17229 -16.73470 -16.54208 -15.71314 -15.57572 -14.80310 -14.62734 -14.45016 -13.98386 -13.78008 -13.60113 -13.07377 -12.92049 -12.65575 -12.58360 -12.47140 -12.22984 -11.88130 -11.44902 -11.29141 -11.22865 -11.05649 -10.84071 -10.76871 -10.35907 -10.10448 -9.88360 -9.61055 -9.24883 -8.73765 -8.60319 -8.10028 -6.22477 -4.28945 1.48330 1.52351 2.31405 2.42231 2.69616 2.81746 3.06747 3.18803 3.26751 3.28149 3.43343 4.04110 4.28170 4.45910 4.60637 4.92896 4.97208 5.04199 5.08329 5.13386 5.27626 5.34865 5.38240 5.43488 5.72198 5.93422 6.11862 6.52147 6.74238 7.12829 7.23940 7.56779 7.71138 7.87269 7.93174 7.99276 8.47915 8.74954 9.37177 10.85630 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.004673 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.217829 B = 5990.065835 C = 6173.671789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.266 5.266 3 N -0.282 5.282 4 C 0.037 3.963 5 C -0.184 4.184 6 Br -0.002 7.002 7 C 0.031 3.969 8 C 0.578 3.422 9 O -0.500 6.500 10 N -0.581 5.581 11 C 0.243 3.757 12 C -0.536 4.536 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.118 3.882 21 C -0.054 4.054 22 C 0.218 3.782 23 N -0.441 5.441 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.192 0.808 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.265 0.735 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.650 11.389 0.074 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.053 5.053 3 N -0.112 5.112 4 C -0.142 4.142 5 C -0.275 4.275 6 Br 0.081 6.919 7 C -0.102 4.102 8 C 0.359 3.641 9 O -0.372 6.372 10 N -0.312 5.312 11 C 0.125 3.875 12 C -0.575 4.575 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.009 4.009 21 C -0.095 4.095 22 C -0.100 4.100 23 N -0.118 5.118 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.208 0.792 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.411 12.291 -0.757 14.912 hybrid contribution -0.862 -0.647 0.521 1.197 sum 7.549 11.644 -0.236 13.879 Atomic orbital electron populations 1.22389 0.72060 1.06183 1.05305 1.45701 1.07838 1.01635 1.50131 1.73210 1.03412 1.13486 1.21101 1.23459 0.93838 0.92597 1.04318 1.22252 0.91226 0.95015 1.18997 1.96649 1.28436 1.68860 1.97920 1.21937 0.90530 0.90533 1.07234 1.16889 0.78791 0.83407 0.84973 1.90873 1.52300 1.62613 1.31456 1.48228 1.59375 1.19281 1.04331 1.19525 0.93536 0.75113 0.99279 1.21363 0.91916 0.92965 1.51209 0.92354 1.24906 0.98918 0.95142 0.94770 1.69921 1.36031 0.97534 1.49113 0.86456 0.84866 0.78193 0.77977 1.19803 1.20849 1.20773 1.21333 0.95241 0.96847 0.87443 1.19922 1.00969 0.99337 0.89313 1.28979 0.93194 0.93586 0.94241 1.81196 1.08642 1.10284 1.11728 0.89068 0.88090 0.87622 0.79158 0.94010 0.92955 0.92483 0.87898 0.91526 0.87495 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 11.22 59.84 0.67 1.58 16 2 N -0.27 -3.73 3.47 -63.86 -0.22 -3.95 16 3 N -0.28 -3.86 11.90 30.61 0.36 -3.50 16 4 C 0.04 0.47 12.03 -17.40 -0.21 0.26 16 5 C -0.18 -2.61 6.45 -38.91 -0.25 -2.86 16 6 Br 0.00 -0.03 32.91 -68.01 -2.24 -2.27 16 7 C 0.03 0.49 4.95 -82.01 -0.41 0.08 16 8 C 0.58 10.74 6.71 -12.69 -0.09 10.66 16 9 O -0.50 -11.43 16.66 5.24 0.09 -11.34 16 10 N -0.58 -10.31 2.46 -176.46 -0.43 -10.75 16 11 C 0.24 5.41 5.19 -5.19 -0.03 5.38 16 12 C -0.54 -13.18 9.39 -34.44 -0.32 -13.51 16 13 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -24.06 13.29 55.43 0.74 -23.33 16 16 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.12 1.63 5.20 -4.04 -0.02 1.61 16 21 C -0.05 -0.65 6.01 -29.52 -0.18 -0.83 16 22 C 0.22 2.87 15.43 -20.76 -0.32 2.55 16 23 N -0.44 -6.78 18.54 42.16 0.78 -5.99 16 24 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.11 1.30 7.66 -51.93 -0.40 0.90 16 27 H 0.19 1.77 8.06 -52.48 -0.42 1.34 16 28 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.10 1.40 8.05 -51.93 -0.42 0.98 16 32 H 0.07 0.87 6.69 -51.93 -0.35 0.52 16 33 H 0.11 1.31 6.71 -51.93 -0.35 0.96 16 34 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -30.73 331.24 -5.75 -36.48 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -3.55 Total: -1.75 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.25 Total: 6.53 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 1.23 Total: -47.52 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.24 Total: -2.27 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.73 -5.75 -36.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822116305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.430 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds