Wall clock time and date at job start Sat Apr 11 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28432 * 125.18879 * 2 1 4 4 C 1.30848 * 110.96855 * 179.75434 * 3 2 1 5 5 C 1.39774 * 107.87043 * 0.41800 * 4 3 2 6 6 Br 1.89100 * 127.33196 * 179.86071 * 5 4 3 7 7 C 1.36714 * 125.18696 * 180.02562 * 2 1 3 8 8 C 1.47063 * 126.89581 * 359.97438 * 7 2 1 9 9 O 1.21647 * 119.99889 * 258.97557 * 8 7 2 10 10 N 1.34770 * 120.00161 * 78.98565 * 8 7 2 11 11 C 1.46503 * 120.00272 * 185.37283 * 10 8 7 12 12 C 1.50702 * 109.46788 * 89.99460 * 11 10 8 13 13 H 1.07994 * 120.00093 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99453 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00290 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99580 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47303 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47366 * 120.00099 * 16 14 12 19 19 H 1.48506 * 109.46992 * 240.00331 * 16 14 12 20 20 C 1.46497 * 120.00144 * 5.37366 * 10 8 7 21 21 C 1.52999 * 109.47267 * 86.75301 * 20 10 8 22 22 C 1.47201 * 109.46989 * 184.90315 * 21 20 10 23 23 N 5.54018 * 107.49311 * 257.72332 * 2 1 3 24 24 H 1.09003 * 109.47631 * 274.86311 * 1 2 3 25 25 H 1.09004 * 109.47046 * 34.86838 * 1 2 3 26 26 H 1.09001 * 109.47355 * 154.86529 * 1 2 3 27 27 H 1.08006 * 126.06306 * 180.28052 * 4 3 2 28 28 H 1.08994 * 109.47602 * 209.99998 * 11 10 8 29 29 H 1.09004 * 109.46901 * 330.00452 * 11 10 8 30 30 H 0.97001 * 119.99694 * 179.97438 * 15 14 12 31 31 H 1.08997 * 109.47226 * 206.75714 * 20 10 8 32 32 H 1.09006 * 109.46858 * 326.75779 * 20 10 8 33 33 H 1.08997 * 109.47115 * 304.90138 * 21 20 10 34 34 H 1.09000 * 109.47001 * 64.90216 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2050 1.0496 0.0000 4 6 3.4734 0.7282 0.0052 5 6 3.5624 -0.6667 -0.0007 6 35 5.1360 -1.7154 -0.0009 7 6 2.2527 -1.1173 -0.0005 8 6 1.8003 -2.5166 -0.0006 9 8 1.8053 -3.1575 1.0333 10 7 1.3804 -3.0890 -1.1462 11 6 0.8197 -4.4424 -1.1263 12 6 -0.6703 -4.3657 -0.9138 13 1 -1.1514 -3.4050 -0.8049 14 6 -1.4191 -5.5221 -0.8584 15 7 -0.8330 -6.6920 -0.9905 16 14 -3.2661 -5.4270 -0.5957 17 1 -3.6768 -4.0048 -0.4780 18 1 -3.9629 -6.0490 -1.7501 19 1 -3.6269 -6.1516 0.6493 20 6 1.4846 -2.3579 -2.4114 21 6 2.8691 -2.5879 -3.0208 22 6 3.0163 -1.7614 -4.2300 23 7 3.1303 -1.1235 -5.1631 24 1 -0.3634 0.0871 1.0240 25 1 -0.3633 0.8432 -0.5875 26 1 -0.3634 -0.9304 -0.4365 27 1 4.3042 1.4183 0.0107 28 1 1.0264 -4.9353 -2.0761 29 1 1.2735 -5.0117 -0.3151 30 1 -1.3598 -7.5055 -0.9512 31 1 0.7201 -2.7150 -3.1014 32 1 1.3404 -1.2930 -2.2286 33 1 3.6353 -2.3116 -2.2964 34 1 2.9801 -3.6398 -3.2838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822116305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:35 Heat of formation + Delta-G solvation = 60.522731 kcal Electronic energy + Delta-G solvation = -21713.909998 eV Core-core repulsion = 18308.814054 eV Total energy + Delta-G solvation = -3405.095944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.72427 -40.64614 -38.11422 -36.85512 -34.89582 -34.74024 -32.95068 -32.31868 -31.06930 -29.12340 -27.97704 -25.64149 -25.47040 -22.97366 -22.54502 -20.28082 -19.12307 -18.53048 -18.34626 -17.90070 -16.96301 -16.84305 -16.25519 -15.95865 -15.86544 -15.23182 -14.91289 -14.74435 -14.36706 -14.11392 -14.00005 -13.72697 -13.70216 -13.53039 -13.27751 -13.03722 -12.79434 -12.57725 -12.35649 -12.31229 -12.16496 -11.90852 -11.67286 -11.19164 -11.10389 -10.58785 -10.33960 -9.81809 -9.68922 -8.17763 -6.30077 0.31841 0.44663 1.10106 1.40183 1.43278 1.46275 1.53941 1.56565 1.74073 1.82808 2.08334 2.44475 2.89447 3.15923 3.36324 3.47615 3.83762 3.91995 4.01956 4.20530 4.26047 4.33058 4.37942 4.53492 4.65491 4.85312 5.00341 5.12723 5.31136 5.48511 5.53704 5.80431 6.08147 6.40499 6.50481 6.76757 6.81618 7.04378 7.40497 8.89996 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.004673 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.217829 B = 5990.065835 C = 6173.671789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.264 5.264 3 N -0.283 5.283 4 C 0.044 3.956 5 C -0.185 4.185 6 Br 0.005 6.995 7 C 0.009 3.991 8 C 0.584 3.416 9 O -0.552 6.552 10 N -0.576 5.576 11 C 0.258 3.742 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.015 3.985 15 N -0.924 5.924 16 Si 0.957 3.043 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.288 1.288 20 C 0.116 3.884 21 C -0.044 4.044 22 C 0.243 3.757 23 N -0.474 5.474 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.092 0.908 27 H 0.224 0.776 28 H 0.044 0.956 29 H 0.013 0.987 30 H 0.266 0.734 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 13.268 -0.463 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.051 5.051 3 N -0.113 5.113 4 C -0.135 4.135 5 C -0.276 4.276 6 Br 0.089 6.911 7 C -0.124 4.124 8 C 0.368 3.632 9 O -0.429 6.429 10 N -0.306 5.306 11 C 0.138 3.862 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.782 3.218 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.214 1.214 20 C -0.008 4.008 21 C -0.085 4.085 22 C -0.075 4.075 23 N -0.152 5.152 24 H 0.118 0.882 25 H 0.148 0.852 26 H 0.111 0.889 27 H 0.241 0.759 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.242 14.214 -1.333 16.485 hybrid contribution -0.754 -1.199 0.705 1.582 sum 7.488 13.015 -0.628 15.029 Atomic orbital electron populations 1.22609 0.70842 1.06740 1.06391 1.45929 1.08590 1.01023 1.49607 1.73238 1.03911 1.13108 1.21061 1.24005 0.94316 0.92295 1.02889 1.22468 0.90951 0.95903 1.18291 1.96662 1.27668 1.68940 1.97853 1.21477 0.91562 0.89427 1.09956 1.17144 0.77590 0.84340 0.84102 1.90840 1.54539 1.64250 1.33225 1.48049 1.58673 1.18063 1.05830 1.19049 0.92453 0.77024 0.97666 1.21716 0.93091 0.93057 1.50060 0.91859 1.25691 1.03038 0.94949 0.94785 1.70030 1.37552 0.98154 1.50589 0.85521 0.80071 0.78645 0.77517 1.18478 1.20281 1.21438 1.21493 0.96530 0.97059 0.85745 1.19840 0.99769 1.00090 0.88784 1.28905 0.92151 0.92700 0.93709 1.81232 1.09715 1.11415 1.12795 0.88209 0.85212 0.88922 0.75910 0.93807 0.96918 0.92531 0.87329 0.90241 0.87274 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.51 11.22 127.77 1.43 2.95 16 2 N -0.26 -6.90 3.47 -355.95 -1.24 -8.14 16 3 N -0.28 -6.99 11.90 -57.08 -0.68 -7.67 16 4 C 0.04 0.98 12.03 85.21 1.03 2.00 16 5 C -0.19 -4.91 6.45 22.71 0.15 -4.77 16 6 Br 0.01 0.13 32.91 -20.37 -0.67 -0.54 16 7 C 0.01 0.28 4.95 40.76 0.20 0.48 16 8 C 0.58 21.76 6.71 86.56 0.58 22.34 16 9 O -0.55 -25.95 16.66 -4.18 -0.07 -26.02 16 10 N -0.58 -20.35 2.46 -830.45 -2.04 -22.40 16 11 C 0.26 11.66 5.19 85.63 0.44 12.10 16 12 C -0.54 -26.67 9.39 25.60 0.24 -26.43 16 13 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 14 C 0.02 0.78 5.46 84.66 0.46 1.24 16 15 N -0.92 -50.83 13.29 21.45 0.28 -50.55 16 16 Si 0.96 40.58 29.54 68.60 2.03 42.60 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 20 C 0.12 3.06 5.20 86.38 0.45 3.51 16 21 C -0.04 -0.97 6.01 28.79 0.17 -0.80 16 22 C 0.24 5.93 15.43 89.44 1.38 7.31 16 23 N -0.47 -13.77 18.54 20.01 0.37 -13.40 16 24 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.09 2.17 7.66 -2.39 -0.02 2.15 16 27 H 0.22 3.30 8.06 -2.91 -0.02 3.27 16 28 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 29 H 0.01 0.68 7.35 -2.38 -0.02 0.66 16 30 H 0.27 13.90 8.31 -92.71 -0.77 13.12 16 31 H 0.11 2.77 8.05 -2.39 -0.02 2.75 16 32 H 0.08 1.92 6.69 -2.38 -0.02 1.91 16 33 H 0.11 2.48 6.71 -2.39 -0.02 2.46 16 34 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -66.39 331.24 5.66 -60.73 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.14 Total: 5.44 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 6.54 Total: 19.93 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -3.30 Total: -102.15 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.07 Total: -26.02 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 35 Polarization: 0.13 SS G_CDS: -0.67 Total: -0.54 kcal Total: -66.39 5.66 -60.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822116305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.256 kcal (2) G-P(sol) polarization free energy of solvation -66.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds