Wall clock time and date at job start Sat Apr 11 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48510 * 109.47164 * 239.99975 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46969 * 120.00218 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.34777 * 119.99511 * 65.28308 * 14 11 10 16 16 O 1.21653 * 120.00225 * 359.71876 * 15 14 11 17 17 C 1.46985 * 119.99531 * 179.72197 * 15 14 11 18 18 C 1.33679 * 124.63646 * 179.97438 * 17 15 14 19 19 C 1.40320 * 115.50487 * 179.97438 * 18 17 15 20 20 C 1.41636 * 129.14727 * 180.02562 * 19 18 17 21 21 C 1.36532 * 118.85592 * 180.02562 * 20 19 18 22 22 C 1.38765 * 119.72246 * 359.91794 * 21 20 19 23 23 N 1.31281 * 121.07752 * 0.05949 * 22 21 20 24 24 C 1.33430 * 121.98211 * 359.97438 * 23 22 21 25 25 S 1.75467 * 124.64392 * 359.69388 * 17 15 14 26 26 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47065 * 60.00657 * 9 7 2 28 28 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 29 29 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 30 30 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 31 31 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 32 32 H 1.07996 * 122.24660 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.57096 * 359.96533 * 20 19 18 34 34 H 1.08003 * 120.13743 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.45877 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.3447 -6.5166 1.0558 16 8 3.2237 -5.7731 2.0111 17 6 4.3901 -7.5499 1.0564 18 6 5.2560 -7.7540 2.0541 19 6 6.1750 -8.7952 1.8530 20 6 7.2054 -9.2560 2.7086 21 6 7.9868 -10.2973 2.2974 22 6 7.7585 -10.8820 1.0598 23 7 6.8011 -10.4498 0.2724 24 6 6.0054 -9.4360 0.6181 25 16 4.6676 -8.6887 -0.2493 26 1 -0.4850 0.8402 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8725 -3.6047 0.8878 30 1 2.8712 -3.6040 -0.8922 31 1 2.6168 -6.9855 -0.7650 32 1 5.2487 -7.1577 2.9545 33 1 7.3708 -8.7910 3.6692 34 1 8.7787 -10.6651 2.9330 35 1 8.3789 -11.7058 0.7389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835274051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:49 Heat of formation + Delta-G solvation = -55.060780 kcal Electronic energy + Delta-G solvation = -23559.279689 eV Core-core repulsion = 19776.103179 eV Total energy + Delta-G solvation = -3783.176509 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98022 -40.15917 -36.80605 -36.27126 -35.69014 -34.65115 -33.92120 -32.91900 -31.21130 -30.37891 -25.88884 -25.58963 -24.73271 -22.83615 -21.69525 -21.00152 -19.51367 -19.29700 -17.93174 -17.72568 -16.74244 -16.59022 -16.11012 -15.96863 -15.65934 -15.27728 -15.12053 -14.92089 -14.76595 -14.55447 -13.70168 -13.49461 -13.47665 -12.90573 -12.56202 -12.41006 -12.24949 -11.83995 -11.78224 -11.68524 -11.59389 -11.10835 -11.04847 -10.98962 -10.91842 -10.69798 -10.43389 -10.37336 -10.03665 -9.74256 -9.29234 -9.21531 -8.57248 -8.50423 -6.12953 -4.18637 -0.38647 0.39894 0.52862 0.62516 1.26119 1.33347 2.42968 2.59779 3.14164 3.28021 3.32573 3.34604 3.70926 3.93441 4.02764 4.11125 4.33089 4.36634 4.38091 4.53419 4.69584 4.71355 4.96852 5.12648 5.22284 5.28677 5.50967 5.54834 5.62459 5.67839 5.94574 6.38580 6.45578 7.15716 7.17409 7.26590 7.32880 7.79761 8.15120 8.83992 9.45928 10.98076 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.002624 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.308999 B =10667.758769 C =11461.112038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.573 4.573 11 S 2.563 3.437 12 O -0.948 6.948 13 O -0.933 6.933 14 N -1.055 6.055 15 C 0.613 3.387 16 O -0.470 6.470 17 C -0.234 4.234 18 C -0.024 4.024 19 C -0.138 4.138 20 C -0.017 4.017 21 C -0.179 4.179 22 C 0.149 3.851 23 N -0.459 5.459 24 C 0.064 3.936 25 S 0.188 5.812 26 H 0.266 0.734 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.426 0.574 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.126 -22.800 2.678 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.708 4.708 11 S 2.664 3.336 12 O -0.939 6.939 13 O -0.923 6.923 14 N -0.814 5.814 15 C 0.398 3.602 16 O -0.342 6.342 17 C -0.355 4.355 18 C -0.057 4.057 19 C -0.149 4.149 20 C -0.044 4.044 21 C -0.202 4.202 22 C -0.022 4.022 23 N -0.170 5.170 24 C -0.180 4.180 25 S 0.453 5.547 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.151 0.849 30 H 0.142 0.858 31 H 0.261 0.739 32 H 0.183 0.817 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 14.952 -22.917 1.126 27.386 hybrid contribution 1.940 1.356 1.654 2.887 sum 16.892 -21.561 2.780 27.530 Atomic orbital electron populations 1.69948 1.06105 1.27369 1.49386 1.25061 0.95004 0.99544 0.94837 0.86498 0.79471 0.82386 0.78733 1.20062 1.21055 1.20032 1.20931 0.93082 0.89533 1.52415 0.91974 1.19003 0.92600 0.90213 0.99120 1.30345 1.13757 1.15758 1.10984 1.06892 0.74853 0.77216 0.74651 1.93604 1.70056 1.85211 1.44980 1.93607 1.70019 1.84296 1.44391 1.55451 1.49261 1.50640 1.26085 1.16807 0.79436 0.82378 0.81588 1.91048 1.68873 1.42035 1.32219 1.23709 1.04887 1.05165 1.01731 1.20200 0.91107 0.95071 0.99316 1.19030 1.00237 0.99289 0.96393 1.21340 0.90762 0.93920 0.98414 1.21776 1.01803 0.98039 0.98562 1.22984 0.92333 0.97092 0.89834 1.67279 1.04648 1.10689 1.34345 1.23845 1.00652 0.97881 0.95642 1.84274 1.26862 1.26585 1.16942 0.92426 0.94666 0.94488 0.84938 0.85797 0.73926 0.81739 0.83616 0.83596 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 10 C -0.57 -11.28 5.83 37.16 0.22 -11.07 16 11 S 2.56 46.75 5.11 -107.50 -0.55 46.20 16 12 O -0.95 -18.72 18.08 -57.54 -1.04 -19.76 16 13 O -0.93 -20.24 17.03 -64.81 -1.10 -21.35 16 14 N -1.05 -14.35 5.60 30.33 0.17 -14.18 16 15 C 0.61 8.64 7.53 -12.72 -0.10 8.55 16 16 O -0.47 -8.08 14.83 -11.96 -0.18 -8.26 16 17 C -0.23 -2.64 6.32 -37.64 -0.24 -2.88 16 18 C -0.02 -0.24 9.80 -40.40 -0.40 -0.64 16 19 C -0.14 -1.25 5.88 -107.10 -0.63 -1.88 16 20 C -0.02 -0.10 10.16 -38.90 -0.40 -0.50 16 21 C -0.18 -0.85 10.01 -40.00 -0.40 -1.25 16 22 C 0.15 0.91 11.18 -17.59 -0.20 0.71 16 23 N -0.46 -4.39 10.39 -11.65 -0.12 -4.51 16 24 C 0.06 0.64 7.66 -16.13 -0.12 0.52 16 25 S 0.19 1.82 22.25 -107.50 -2.39 -0.57 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.13 2.53 7.20 -51.92 -0.37 2.16 16 30 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 31 H 0.43 4.35 7.83 -34.47 -0.27 4.08 16 32 H 0.17 1.43 7.96 -52.49 -0.42 1.01 16 33 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 34 H 0.15 0.22 8.06 -52.48 -0.42 -0.20 16 35 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -37.37 338.98 -10.34 -47.71 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.14 Total: 0.07 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -2.81 Total: -21.00 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.79 Total: -44.44 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -2.32 Total: -49.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 48.57 SS G_CDS: -2.94 Total: 45.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.37 -10.34 -47.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835274051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.352 kcal (2) G-P(sol) polarization free energy of solvation -37.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds