Wall clock time and date at job start Sat Apr 11 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48510 * 109.47164 * 239.99975 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46969 * 120.00218 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.34777 * 119.99511 * 65.28308 * 14 11 10 16 16 O 1.21653 * 120.00225 * 359.71876 * 15 14 11 17 17 C 1.46985 * 119.99531 * 179.72197 * 15 14 11 18 18 C 1.33679 * 124.63646 * 179.97438 * 17 15 14 19 19 C 1.40320 * 115.50487 * 179.97438 * 18 17 15 20 20 C 1.41636 * 129.14727 * 180.02562 * 19 18 17 21 21 C 1.36532 * 118.85592 * 180.02562 * 20 19 18 22 22 C 1.38765 * 119.72246 * 359.91794 * 21 20 19 23 23 N 1.31281 * 121.07752 * 0.05949 * 22 21 20 24 24 C 1.33430 * 121.98211 * 359.97438 * 23 22 21 25 25 S 1.75467 * 124.64392 * 359.69388 * 17 15 14 26 26 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47065 * 60.00657 * 9 7 2 28 28 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 29 29 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 30 30 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 31 31 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 32 32 H 1.07996 * 122.24660 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.57096 * 359.96533 * 20 19 18 34 34 H 1.08003 * 120.13743 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.45877 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.3447 -6.5166 1.0558 16 8 3.2237 -5.7731 2.0111 17 6 4.3901 -7.5499 1.0564 18 6 5.2560 -7.7540 2.0541 19 6 6.1750 -8.7952 1.8530 20 6 7.2054 -9.2560 2.7086 21 6 7.9868 -10.2973 2.2974 22 6 7.7585 -10.8820 1.0598 23 7 6.8011 -10.4498 0.2724 24 6 6.0054 -9.4360 0.6181 25 16 4.6676 -8.6887 -0.2493 26 1 -0.4850 0.8402 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8725 -3.6047 0.8878 30 1 2.8712 -3.6040 -0.8922 31 1 2.6168 -6.9855 -0.7650 32 1 5.2487 -7.1577 2.9545 33 1 7.3708 -8.7910 3.6692 34 1 8.7787 -10.6651 2.9330 35 1 8.3789 -11.7058 0.7389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835274051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:49 Heat of formation + Delta-G solvation = -83.362267 kcal Electronic energy + Delta-G solvation = -23560.506933 eV Core-core repulsion = 19776.103179 eV Total energy + Delta-G solvation = -3784.403754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.70665 -41.14887 -38.39272 -37.32194 -36.97845 -36.01015 -35.81820 -33.41606 -33.20190 -31.06636 -27.68168 -26.61167 -25.31831 -23.81862 -23.45021 -21.86891 -20.82880 -20.20128 -19.35056 -18.59899 -18.44857 -17.49630 -17.41807 -16.91990 -16.61886 -16.53056 -16.48123 -16.23622 -15.86870 -15.57690 -15.23626 -14.49795 -14.16520 -14.15537 -13.96564 -13.79863 -13.45225 -13.34091 -13.25427 -12.97250 -12.93302 -12.86779 -12.42305 -12.36632 -12.26844 -12.13088 -11.87927 -11.73019 -11.43203 -11.13687 -10.64965 -10.57968 -9.94624 -9.24177 -8.27417 -6.41529 -1.14870 -1.06434 -0.07076 0.02268 0.54477 0.57621 1.20221 1.40428 1.44251 1.52234 1.53064 2.35930 2.47408 2.62189 2.77568 3.05721 3.07583 3.41691 3.52099 3.59553 3.75173 3.94391 3.98434 3.99259 4.26428 4.47324 4.49068 4.66457 4.73875 4.96630 5.13592 5.21006 5.21560 5.37446 5.54125 5.65901 6.02350 6.07957 6.63628 6.70627 7.28289 8.84764 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.002624 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.308999 B =10667.758769 C =11461.112038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.023 3.977 10 C -0.575 4.575 11 S 2.598 3.402 12 O -0.963 6.963 13 O -0.969 6.969 14 N -1.039 6.039 15 C 0.616 3.384 16 O -0.506 6.506 17 C -0.261 4.261 18 C -0.007 4.007 19 C -0.158 4.158 20 C -0.017 4.017 21 C -0.167 4.167 22 C 0.152 3.848 23 N -0.494 5.494 24 C 0.048 3.952 25 S 0.189 5.811 26 H 0.268 0.732 27 H 0.017 0.983 28 H 0.008 0.992 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.442 0.558 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.187 0.813 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.722 -24.186 3.215 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.093 0.907 9 C -0.016 4.016 10 C -0.708 4.708 11 S 2.697 3.303 12 O -0.954 6.954 13 O -0.959 6.959 14 N -0.803 5.803 15 C 0.404 3.596 16 O -0.381 6.381 17 C -0.382 4.382 18 C -0.040 4.040 19 C -0.168 4.168 20 C -0.044 4.044 21 C -0.189 4.189 22 C -0.018 4.018 23 N -0.205 5.205 24 C -0.195 4.195 25 S 0.454 5.546 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.026 0.974 29 H 0.157 0.843 30 H 0.172 0.828 31 H 0.281 0.719 32 H 0.191 0.809 33 H 0.192 0.808 34 H 0.205 0.795 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 18.559 -24.320 1.634 30.636 hybrid contribution 1.010 1.540 1.535 2.397 sum 19.569 -22.779 3.168 30.197 Atomic orbital electron populations 1.70093 1.07995 1.28487 1.50570 1.26110 0.95912 1.03839 0.94252 0.85346 0.78149 0.77207 0.79444 1.18579 1.20776 1.19016 1.21436 0.93962 0.90632 1.51988 0.90709 1.18845 0.93415 0.92490 0.96867 1.30231 1.12922 1.14860 1.12837 1.05568 0.74494 0.76806 0.73384 1.93577 1.70921 1.85460 1.45433 1.93558 1.71444 1.84847 1.46099 1.54903 1.48465 1.49881 1.27082 1.17160 0.79417 0.82398 0.80664 1.91026 1.69954 1.43713 1.33397 1.23338 1.05359 1.05914 1.03564 1.20423 0.90159 0.94601 0.98836 1.19194 1.01349 0.99399 0.96905 1.21793 0.89572 0.94049 0.98999 1.22247 1.01792 0.96669 0.98198 1.23739 0.91061 0.97128 0.89900 1.67313 1.06029 1.11269 1.35888 1.23960 1.00930 0.98557 0.96085 1.84096 1.27626 1.26407 1.16511 0.92278 0.96507 0.97383 0.84310 0.82831 0.71879 0.80940 0.80816 0.79544 0.78038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.98 43.73 29.54 68.60 2.03 45.75 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.07 3.91 7.74 -2.91 -0.02 3.88 16 9 C 0.02 1.22 4.98 29.85 0.15 1.37 16 10 C -0.57 -22.98 5.83 71.98 0.42 -22.56 16 11 S 2.60 96.96 5.11 -56.49 -0.29 96.67 16 12 O -0.96 -38.59 18.08 -127.65 -2.31 -40.90 16 13 O -0.97 -43.57 17.03 -120.70 -2.06 -45.62 16 14 N -1.04 -28.40 5.60 -176.19 -0.99 -29.39 16 15 C 0.62 17.50 7.53 86.54 0.65 18.15 16 16 O -0.51 -17.76 14.83 12.24 0.18 -17.57 16 17 C -0.26 -5.82 6.32 23.53 0.15 -5.67 16 18 C -0.01 -0.13 9.80 21.74 0.21 0.08 16 19 C -0.16 -2.55 5.88 -21.47 -0.13 -2.68 16 20 C -0.02 -0.15 10.16 22.71 0.23 0.08 16 21 C -0.17 -0.84 10.01 22.00 0.22 -0.62 16 22 C 0.15 1.32 11.18 84.90 0.95 2.27 16 23 N -0.49 -8.48 10.39 -190.77 -1.98 -10.46 16 24 C 0.05 0.92 7.66 84.92 0.65 1.57 16 25 S 0.19 3.59 22.25 -56.49 -1.26 2.33 16 26 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.14 5.38 7.20 -2.39 -0.02 5.37 16 30 H 0.15 5.11 8.14 -2.39 -0.02 5.09 16 31 H 0.44 8.94 7.83 -96.74 -0.76 8.19 16 32 H 0.17 2.82 7.96 -2.91 -0.02 2.80 16 33 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 34 H 0.19 -0.56 8.06 -2.91 -0.02 -0.58 16 35 H 0.20 0.19 8.06 -2.91 -0.02 0.17 16 Total: -1.00 -83.58 338.98 -1.78 -85.36 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.40 Total: 8.52 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 4.20 Total: -37.96 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -2.68 Total: -96.58 kcal Atomic # 8 Polarization: -99.92 SS G_CDS: -4.18 Total: -104.10 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 100.55 SS G_CDS: -1.55 Total: 99.00 kcal Total: -83.58 -1.78 -85.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835274051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.002 kcal (2) G-P(sol) polarization free energy of solvation -83.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds