Wall clock time and date at job start Sat Apr 11 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 119.99392 * 2 1 4 4 H 1.48506 * 109.46633 * 239.99408 * 3 2 1 5 5 H 1.48494 * 109.47346 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46974 * 120.00023 * 3 2 1 7 7 C 1.38651 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99631 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.35756 * 117.00028 * 185.05157 * 9 7 2 11 11 C 1.38931 * 120.03869 * 354.48657 * 10 9 7 12 12 C 1.38113 * 120.03952 * 179.97438 * 11 10 9 13 13 C 1.38226 * 120.12395 * 359.78747 * 12 11 10 14 14 C 1.38788 * 120.08309 * 0.46293 * 13 12 11 15 15 O 1.35893 * 120.02250 * 179.79185 * 14 13 12 16 16 S 1.52200 * 113.99933 * 269.72413 * 15 14 13 17 17 O 1.42098 * 104.27923 * 318.93153 * 16 15 14 18 18 O 1.42104 * 104.27437 * 191.07345 * 16 15 14 19 19 C 1.81392 * 104.44944 * 75.00367 * 16 15 14 20 20 C 1.53005 * 109.47467 * 180.02562 * 19 16 15 21 21 C 1.52999 * 109.47258 * 179.97438 * 20 19 16 22 22 F 1.39903 * 109.47173 * 59.99945 * 21 20 19 23 23 F 1.39899 * 109.46682 * 179.97438 * 21 20 19 24 24 F 1.39894 * 109.47128 * 299.99464 * 21 20 19 25 25 C 1.38613 * 119.95434 * 359.51538 * 14 13 12 26 26 H 0.96997 * 120.00716 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.98118 * 359.97049 * 11 10 9 28 28 H 1.07998 * 119.93771 * 180.02562 * 12 11 10 29 29 H 1.08007 * 119.96358 * 180.25769 * 13 12 11 30 30 H 1.09007 * 109.47055 * 299.99753 * 19 16 15 31 31 H 1.08996 * 109.47548 * 59.99460 * 19 16 15 32 32 H 1.09007 * 109.46697 * 299.99868 * 20 19 16 33 33 H 1.08995 * 109.47077 * 59.99699 * 20 19 16 34 34 H 1.07996 * 120.06209 * 180.22916 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1031 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0702 -3.5045 0.1076 11 6 3.4579 -3.4385 0.0954 12 6 4.2060 -4.5943 0.2049 13 6 3.5768 -5.8186 0.3311 14 6 2.1908 -5.8910 0.3386 15 8 1.5735 -7.0957 0.4586 16 16 1.2861 -7.7790 -0.8707 17 8 0.8428 -6.7270 -1.7169 18 8 0.4259 -8.8580 -0.5312 19 6 2.8999 -8.3998 -1.4188 20 6 2.7418 -9.1154 -2.7619 21 6 4.1031 -9.6384 -3.2246 22 9 4.6056 -10.5346 -2.2750 23 9 3.9583 -10.2932 -4.4523 24 9 4.9900 -8.5662 -3.3691 25 6 1.4367 -4.7331 0.2295 26 1 -0.4851 0.8400 -0.0004 27 1 3.9519 -2.4829 0.0003 28 1 5.2846 -4.5411 0.1956 29 1 4.1644 -6.7204 0.4207 30 1 3.5912 -7.5646 -1.5318 31 1 3.2913 -9.0977 -0.6787 32 1 2.0503 -9.9506 -2.6494 33 1 2.3507 -8.4171 -3.5018 34 1 0.3581 -4.7871 0.2389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841566624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:58 Heat of formation + Delta-G solvation = -259.476122 kcal Electronic energy + Delta-G solvation = -27409.728029 eV Core-core repulsion = 22600.785043 eV Total energy + Delta-G solvation = -4808.942986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.047 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.44382 -47.94666 -47.90356 -40.77976 -38.78922 -37.26451 -36.22949 -36.08319 -34.62868 -32.51741 -30.20153 -29.08097 -27.25890 -25.61724 -23.33530 -22.94752 -21.96597 -20.38783 -19.14950 -18.92473 -18.55606 -18.24027 -17.66017 -17.32415 -16.96614 -16.53037 -15.68463 -15.48244 -15.06134 -14.82228 -14.80819 -14.42056 -14.36063 -14.25305 -14.05810 -14.03440 -13.91116 -13.61482 -13.32200 -13.16462 -12.84732 -12.59606 -12.36966 -12.28030 -12.22023 -12.08987 -11.85867 -11.46684 -11.45771 -11.08084 -10.95415 -10.92462 -10.61520 -9.65305 -9.05759 -8.51961 -7.63164 -6.64652 -4.24087 -0.07027 1.56457 1.92045 2.14704 2.39231 3.03047 3.03711 3.07791 3.27133 3.36800 3.61493 3.68493 3.78515 3.90267 4.09773 4.21130 4.37814 4.68938 4.77802 4.90064 4.96613 5.17119 5.18143 5.36368 5.50642 5.73330 5.93402 6.26390 6.46011 6.58531 6.70765 6.98241 7.11659 7.37105 7.77166 8.78452 9.42017 10.51684 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.002947 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.442354 B = 9498.340776 C =10136.615569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.397 4.397 8 H 0.097 0.903 9 O -0.160 6.160 10 C 0.163 3.837 11 C -0.219 4.219 12 C -0.053 4.053 13 C -0.232 4.232 14 C 0.093 3.907 15 O -0.655 6.655 16 S 2.606 3.394 17 O -0.932 6.932 18 O -0.931 6.931 19 C -0.674 4.674 20 C -0.157 4.157 21 C 0.463 3.537 22 F -0.181 7.181 23 F -0.181 7.181 24 F -0.177 7.177 25 C -0.154 4.154 26 H 0.275 0.725 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 -15.333 -4.034 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.472 4.472 8 H 0.114 0.886 9 O -0.062 6.062 10 C 0.107 3.893 11 C -0.239 4.239 12 C -0.072 4.072 13 C -0.254 4.254 14 C 0.052 3.948 15 O -0.614 6.614 16 S 2.698 3.302 17 O -0.930 6.930 18 O -0.929 6.929 19 C -0.797 4.797 20 C -0.196 4.196 21 C 0.408 3.592 22 F -0.162 7.162 23 F -0.162 7.162 24 F -0.158 7.158 25 C -0.176 4.176 26 H 0.085 0.915 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.172 0.828 31 H 0.167 0.833 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.708 -15.100 -3.881 17.392 hybrid contribution 1.354 0.306 -0.129 1.394 sum 9.061 -14.793 -4.011 17.805 Atomic orbital electron populations 1.70028 1.06114 1.28423 1.43733 1.25388 0.95917 0.99110 0.95964 0.85704 0.78739 0.79212 0.79372 1.19243 1.20094 1.19271 1.21384 0.92006 0.80412 1.53394 0.88559 1.83989 1.34369 1.11405 1.76453 1.18925 0.90079 0.87601 0.92712 1.21372 0.93581 0.99605 1.09356 1.20583 0.99127 0.91036 0.96413 1.20636 0.91259 0.99274 1.14196 1.17543 0.90353 0.79216 1.07668 1.85632 1.79192 1.39450 1.57173 1.05352 0.75926 0.74975 0.73958 1.93720 1.78439 1.52380 1.68510 1.93630 1.61014 1.56705 1.81525 1.31051 1.29426 1.13393 1.05798 1.22523 0.94844 1.04488 0.97752 1.20175 0.88112 0.75762 0.75117 1.93194 1.89258 1.69239 1.64531 1.93208 1.95912 1.82027 1.45080 1.93216 1.71441 1.55602 1.95584 1.20157 1.00641 0.89208 1.07597 0.91484 0.84398 0.85704 0.85925 0.82784 0.83313 0.85621 0.85330 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.70 13.67 55.48 0.76 -22.94 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.95 19.11 29.55 -169.99 -5.02 14.08 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.40 -10.29 9.49 30.88 0.29 -10.00 16 8 H 0.10 2.23 5.20 -52.49 -0.27 1.96 16 9 O -0.16 -4.31 9.76 0.05 0.00 -4.31 16 10 C 0.16 3.66 6.64 -39.13 -0.26 3.40 16 11 C -0.22 -4.17 9.17 -39.37 -0.36 -4.54 16 12 C -0.05 -0.82 10.03 -39.63 -0.40 -1.21 16 13 C -0.23 -3.46 8.46 -39.38 -0.33 -3.79 16 14 C 0.09 1.63 4.79 -39.24 -0.19 1.44 16 15 O -0.65 -10.17 10.05 -51.73 -0.52 -10.69 16 16 S 2.61 35.33 5.17 -107.50 -0.56 34.78 16 17 O -0.93 -15.71 16.26 -67.04 -1.09 -16.80 16 18 O -0.93 -14.34 18.09 -67.04 -1.21 -15.56 16 19 C -0.67 -6.15 5.23 37.16 0.19 -5.96 16 20 C -0.16 -1.24 5.27 -26.73 -0.14 -1.38 16 21 C 0.46 4.16 3.16 37.16 0.12 4.27 16 22 F -0.18 -1.70 16.80 2.25 0.04 -1.67 16 23 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 24 F -0.18 -1.80 16.80 2.25 0.04 -1.76 16 25 C -0.15 -3.20 8.99 -39.25 -0.35 -3.56 16 26 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.14 2.55 5.63 -52.49 -0.30 2.25 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.12 1.36 7.52 -52.48 -0.39 0.96 16 30 H 0.15 1.34 6.28 -51.92 -0.33 1.02 16 31 H 0.15 1.03 7.80 -51.93 -0.41 0.62 16 32 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.14 2.82 8.06 -52.49 -0.42 2.39 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -32.32 324.65 -6.68 -39.00 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -2.52 Total: 2.93 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.53 Total: -20.31 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 0.76 Total: -22.94 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -2.82 Total: -47.36 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.11 Total: -5.07 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 35.33 SS G_CDS: -0.56 Total: 34.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.32 -6.68 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841566624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.477 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds