Wall clock time and date at job start Sat Apr 11 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86810 * 120.00022 * 2 1 4 4 H 1.48501 * 109.47101 * 274.99931 * 3 2 1 5 5 H 1.48502 * 109.46687 * 34.99880 * 3 2 1 6 6 H 1.48498 * 109.46967 * 154.99562 * 3 2 1 7 7 C 1.37874 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00366 * 184.92257 * 7 2 1 9 9 C 1.50705 * 119.99908 * 4.91651 * 7 2 1 10 10 O 1.42894 * 110.88586 * 298.61650 * 9 7 2 11 11 C 1.55159 * 111.00356 * 174.72926 * 9 7 2 12 12 C 1.54328 * 102.94012 * 206.39199 * 11 9 7 13 13 N 1.47022 * 107.27415 * 22.19142 * 12 11 9 14 14 C 1.34774 * 125.64777 * 181.02379 * 13 12 11 15 15 O 1.21556 * 119.99709 * 184.88252 * 14 13 12 16 16 C 1.47848 * 119.99915 * 4.88303 * 14 13 12 17 17 C 1.39580 * 120.13721 * 304.06916 * 16 14 13 18 18 C 1.38059 * 119.83562 * 179.68515 * 17 16 14 19 19 Cl 1.73601 * 119.93909 * 180.29519 * 18 17 16 20 20 C 1.38490 * 120.11902 * 0.57173 * 18 17 16 21 21 C 1.38317 * 120.27933 * 359.44692 * 20 18 17 22 22 C 1.37983 * 120.15847 * 0.25369 * 21 20 18 23 23 N 1.48021 * 120.05941 * 180.02562 * 22 21 20 24 24 O 1.21800 * 120.00108 * 353.40593 * 23 22 21 25 25 O 1.21800 * 120.00096 * 173.40577 * 23 22 21 26 26 C 1.47426 * 108.69882 * 1.29226 * 13 12 11 27 27 H 0.97003 * 119.99848 * 359.97438 * 1 2 3 28 28 H 0.96699 * 114.00290 * 56.11862 * 10 9 7 29 29 H 1.08993 * 110.71854 * 88.02931 * 11 9 7 30 30 H 1.09003 * 110.72240 * 324.75291 * 11 9 7 31 31 H 1.09001 * 109.87678 * 262.77961 * 12 11 9 32 32 H 1.08996 * 110.01053 * 141.68557 * 12 11 9 33 33 H 1.07997 * 120.08084 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.86117 * 179.72719 * 20 18 17 35 35 H 1.08001 * 119.92352 * 180.27723 * 21 20 18 36 36 H 1.09000 * 110.37184 * 94.48456 * 26 13 12 37 37 H 1.09012 * 110.36470 * 216.80406 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1075 -1.3948 5 1 1.5033 2.6199 0.8031 6 1 3.5955 1.4120 0.5918 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0808 9 6 1.2552 -2.4968 -0.1107 10 8 0.3622 -2.6666 0.9918 11 6 2.2354 -3.6944 -0.2222 12 6 1.4056 -4.7505 -0.9824 13 7 0.3478 -4.0338 -1.7097 14 6 -0.6007 -4.6035 -2.4793 15 8 -1.3740 -3.9063 -3.1066 16 6 -0.7008 -6.0764 -2.5603 17 6 0.4050 -6.8334 -2.9508 18 6 0.3065 -8.2089 -3.0181 19 17 1.6823 -9.1536 -3.4960 20 6 -0.8894 -8.8359 -2.7105 21 6 -1.9883 -8.0904 -2.3234 22 6 -1.9010 -6.7155 -2.2463 23 7 -3.0782 -5.9199 -1.8312 24 8 -4.1563 -6.4643 -1.6737 25 8 -2.9687 -4.7209 -1.6472 26 6 0.5005 -2.5884 -1.4630 27 1 -0.4850 0.8401 0.0004 28 1 -0.2695 -1.9427 1.1015 29 1 2.5117 -4.0598 0.7667 30 1 3.1212 -3.4159 -0.7931 31 1 0.9604 -5.4509 -0.2758 32 1 2.0409 -5.2879 -1.6865 33 1 1.3365 -6.3448 -3.1952 34 1 -0.9630 -9.9118 -2.7687 35 1 -2.9168 -8.5856 -2.0805 36 1 1.0857 -2.1274 -2.2588 37 1 -0.4767 -2.1116 -1.3847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:12 Heat of formation + Delta-G solvation = -52.436048 kcal Electronic energy + Delta-G solvation = -27851.099415 eV Core-core repulsion = 23623.240145 eV Total energy + Delta-G solvation = -4227.859270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.16471 -40.28436 -38.96102 -37.38678 -37.02555 -36.28604 -34.40233 -32.22591 -32.18161 -32.09937 -30.16172 -27.97077 -26.74988 -25.47315 -24.27261 -22.79699 -22.39508 -20.17055 -19.70623 -18.90294 -18.44953 -17.57841 -17.34351 -17.16708 -16.43633 -16.16507 -15.55658 -15.22012 -14.80918 -14.66004 -14.31509 -14.17187 -13.56317 -13.37552 -13.10253 -12.91903 -12.56215 -12.25406 -12.11399 -11.71127 -11.63959 -11.56273 -11.35419 -11.10950 -10.98205 -10.91399 -10.78926 -10.69594 -10.52093 -10.23307 -9.95064 -9.74405 -9.61790 -9.43662 -8.72363 -8.43410 -7.93082 -6.31315 -4.41593 -0.48877 0.27088 1.15799 1.20998 1.45766 2.54113 2.89293 3.19062 3.27372 3.28810 3.30661 3.88742 4.08530 4.22967 4.28005 4.31646 4.60649 4.95077 4.99649 5.02667 5.21289 5.25007 5.28584 5.48422 5.63424 5.69823 5.91807 6.03617 6.39935 6.40395 6.61657 6.74925 6.82021 7.19092 7.29595 7.71095 7.73987 7.93404 7.97330 8.41202 8.62369 9.27516 9.41510 10.75847 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.003758 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.701163 B = 7448.281951 C = 8760.059812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.251 3.749 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.099 3.901 13 N -0.594 5.594 14 C 0.559 3.441 15 O -0.506 6.506 16 C -0.032 4.032 17 C -0.086 4.086 18 C 0.005 3.995 19 Cl -0.037 7.037 20 C -0.101 4.101 21 C -0.045 4.045 22 C -0.008 4.008 23 N 0.017 4.983 24 O -0.174 6.174 25 O -0.095 6.095 26 C 0.096 3.904 27 H 0.272 0.728 28 H 0.387 0.613 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.065 0.935 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.119 -18.838 -5.581 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.210 3.790 10 O -0.394 6.394 11 C -0.155 4.155 12 C -0.024 4.024 13 N -0.326 5.326 14 C 0.343 3.657 15 O -0.381 6.381 16 C -0.037 4.037 17 C -0.106 4.106 18 C -0.022 4.022 19 Cl -0.007 7.007 20 C -0.121 4.121 21 C -0.065 4.065 22 C -0.092 4.092 23 N 0.541 4.459 24 O -0.382 6.382 25 O -0.323 6.323 26 C -0.025 4.025 27 H 0.083 0.917 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.083 0.917 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.480 -19.450 -6.131 20.543 hybrid contribution -0.045 1.384 -0.095 1.388 sum 2.434 -18.066 -6.226 19.263 Atomic orbital electron populations 1.69633 1.05992 1.28158 1.48953 1.25085 0.95012 0.99783 0.93255 0.86396 0.79836 0.82525 0.78206 1.20409 1.20941 1.19684 1.21455 0.94018 0.90023 1.52594 0.91400 1.19630 0.85676 0.91503 0.82205 1.86069 1.51195 1.50959 1.51152 1.22633 0.97896 0.95322 0.99633 1.22161 0.89373 0.96094 0.94805 1.48619 1.27705 1.10719 1.45544 1.17278 0.81698 0.85119 0.81563 1.90863 1.41058 1.62108 1.44105 1.20114 0.91204 0.96629 0.95782 1.21280 0.98768 0.91487 0.99032 1.21177 0.90200 0.92035 0.98766 1.98430 1.41231 1.71545 1.89533 1.21175 0.89960 1.01622 0.99296 1.20965 1.00644 0.90204 0.94651 1.21209 0.86967 0.91987 1.08994 1.43434 1.01676 1.01741 0.99091 1.94490 1.13935 1.73928 1.55882 1.94788 1.91086 0.95575 1.50872 1.23454 1.03294 0.75964 0.99773 0.91742 0.76146 0.90514 0.90140 0.92336 0.92582 0.82054 0.82227 0.81541 0.91692 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.34 10.71 55.43 0.59 -22.74 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.75 16 3 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.54 -13.63 8.26 -34.44 -0.28 -13.92 16 8 H 0.07 1.67 7.79 -52.48 -0.41 1.26 16 9 C 0.25 5.84 0.89 -89.50 -0.08 5.77 16 10 O -0.58 -14.71 13.20 -35.23 -0.47 -15.17 16 11 C -0.12 -2.18 6.12 -24.89 -0.15 -2.33 16 12 C 0.10 1.62 5.89 -3.06 -0.02 1.60 16 13 N -0.59 -11.73 3.32 -171.48 -0.57 -12.30 16 14 C 0.56 10.97 5.88 -12.33 -0.07 10.90 16 15 O -0.51 -11.78 15.12 -18.69 -0.28 -12.06 16 16 C -0.03 -0.49 5.24 -104.97 -0.55 -1.04 16 17 C -0.09 -0.96 8.33 -39.15 -0.33 -1.29 16 18 C 0.01 0.05 6.31 -39.55 -0.25 -0.20 16 19 Cl -0.04 -0.27 28.95 -51.86 -1.50 -1.78 16 20 C -0.10 -0.76 9.82 -39.46 -0.39 -1.15 16 21 C -0.05 -0.45 9.55 -39.65 -0.38 -0.82 16 22 C -0.01 -0.12 6.86 -79.55 -0.55 -0.66 16 23 N 0.02 0.31 4.45 34.16 0.15 0.46 16 24 O -0.17 -2.95 18.47 -29.46 -0.54 -3.50 16 25 O -0.10 -2.07 15.03 -37.06 -0.56 -2.63 16 26 C 0.10 2.22 5.50 -2.41 -0.01 2.20 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.39 10.16 7.18 45.56 0.33 10.49 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.72 6.49 -51.93 -0.34 0.38 16 33 H 0.16 1.60 6.81 -52.49 -0.36 1.25 16 34 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.17 1.26 7.62 -52.49 -0.40 0.86 16 36 H 0.06 1.52 8.04 -51.93 -0.42 1.10 16 37 H 0.09 2.41 7.55 -51.92 -0.39 2.02 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -30.44 336.19 -9.09 -39.53 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -2.81 Total: 9.43 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.15 Total: 0.81 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.18 Total: -34.58 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.85 Total: -33.36 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.50 Total: -1.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.44 -9.09 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.909 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds