Wall clock time and date at job start Sat Apr 11 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99795 * 2 1 4 4 H 1.48510 * 109.47217 * 240.00080 * 3 2 1 5 5 H 1.48500 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47212 * 120.00021 * 3 2 1 7 7 C 1.37879 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99571 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99839 * 0.27777 * 7 2 1 10 10 O 1.42894 * 110.89141 * 59.02276 * 9 7 2 11 11 C 1.55162 * 111.00414 * 182.90406 * 9 7 2 12 12 C 1.54324 * 102.94377 * 153.57030 * 11 9 7 13 13 N 1.47024 * 107.27245 * 337.81010 * 12 11 9 14 14 C 1.34774 * 125.65032 * 178.97143 * 13 12 11 15 15 O 1.21553 * 120.00228 * 175.07454 * 14 13 12 16 16 C 1.47799 * 119.99713 * 355.07565 * 14 13 12 17 17 C 1.40077 * 120.54905 * 7.40701 * 16 14 13 18 18 C 1.38282 * 118.29882 * 179.73653 * 17 16 14 19 19 C 1.38509 * 119.29222 * 0.53624 * 18 17 16 20 20 Br 1.89101 * 119.46669 * 179.70131 * 19 18 17 21 21 N 1.32005 * 121.05915 * 359.72702 * 19 18 17 22 22 C 1.31686 * 121.86488 * 359.97438 * 21 19 18 23 23 C 1.47468 * 108.72076 * 358.97223 * 13 12 11 24 24 H 0.96999 * 120.00935 * 0.02562 * 1 2 3 25 25 H 0.96702 * 113.99778 * 300.70529 * 10 9 7 26 26 H 1.08998 * 110.71932 * 271.93690 * 11 9 7 27 27 H 1.09003 * 110.71654 * 35.03576 * 11 9 7 28 28 H 1.09008 * 109.87787 * 97.22368 * 12 11 9 29 29 H 1.08992 * 109.88602 * 218.39166 * 12 11 9 30 30 H 1.07999 * 120.85140 * 359.97438 * 17 16 14 31 31 H 1.07998 * 120.34738 * 180.24027 * 18 17 16 32 32 H 1.08002 * 119.71262 * 180.02562 * 22 21 19 33 33 H 1.08999 * 110.35191 * 265.25112 * 23 13 12 34 34 H 1.09004 * 110.40564 * 142.91671 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 -0.0052 10 8 0.4061 -2.5946 -1.1535 11 6 2.2256 -3.7042 0.0699 12 6 1.3644 -4.8048 0.7246 13 7 0.2769 -4.1336 1.4514 14 6 -0.7034 -4.7491 2.1418 15 8 -1.5020 -4.0918 2.7804 16 6 -0.8075 -6.2233 2.1224 17 6 0.1913 -6.9997 1.5210 18 6 0.0496 -8.3751 1.5344 19 6 -1.0703 -8.9353 2.1265 20 35 -1.2733 -10.8153 2.1401 21 7 -1.9984 -8.1777 2.6809 22 6 -1.9048 -6.8643 2.6982 23 6 0.4360 -2.6754 1.3003 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2526 -1.8894 -1.2169 26 1 2.5435 -4.0058 -0.9281 27 1 3.0880 -3.4645 0.6919 28 1 0.9494 -5.4570 -0.0440 29 1 1.9709 -5.3861 1.4190 30 1 1.0520 -6.5361 1.0620 31 1 0.8017 -9.0056 1.0837 32 1 -2.6845 -6.2782 3.1618 33 1 0.9837 -2.2639 2.1480 34 1 -0.5378 -2.1945 1.2072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:53 Heat of formation + Delta-G solvation = -41.017391 kcal Electronic energy + Delta-G solvation = -21379.569454 eV Core-core repulsion = 17937.777649 eV Total energy + Delta-G solvation = -3441.791805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98361 -40.47846 -38.90742 -36.35142 -34.19163 -34.13718 -33.52046 -31.92402 -30.95846 -29.72355 -27.31864 -25.70029 -24.76680 -23.63307 -21.56262 -21.11554 -19.16357 -18.48437 -17.88268 -17.76735 -17.04639 -16.88438 -16.40691 -16.18098 -15.54240 -15.39066 -14.91520 -14.82646 -14.72030 -14.38326 -13.92458 -13.47810 -13.28388 -13.15406 -12.81081 -12.37616 -12.31518 -12.23565 -12.15658 -12.06751 -11.61309 -11.41286 -11.19734 -11.13742 -10.75023 -10.59185 -10.33296 -10.18832 -9.56256 -8.25549 -6.42114 -0.74130 -0.03669 0.13903 1.44062 1.45481 1.52842 1.59143 1.90676 2.38829 2.52909 3.01168 3.15573 3.35867 3.62273 3.69325 3.76398 3.78849 4.09458 4.20659 4.29622 4.42721 4.50681 4.64626 4.71607 4.79138 5.01011 5.06674 5.15782 5.27809 5.38801 5.46508 5.76189 6.05110 6.36860 6.51253 6.66723 6.97674 7.29098 7.36165 8.79558 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.038469 B = 0.002574 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.677777 B =10876.787621 C =11297.451987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.114 4.114 12 C 0.087 3.913 13 N -0.602 5.602 14 C 0.561 3.439 15 O -0.586 6.586 16 C -0.172 4.172 17 C -0.060 4.060 18 C -0.129 4.129 19 C 0.123 3.877 20 Br 0.012 6.988 21 N -0.482 5.482 22 C 0.157 3.843 23 C 0.107 3.893 24 H 0.269 0.731 25 H 0.375 0.625 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.202 0.798 31 H 0.191 0.809 32 H 0.170 0.830 33 H 0.049 0.951 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -21.314 1.938 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.594 4.594 8 H 0.090 0.910 9 C 0.191 3.809 10 O -0.396 6.396 11 C -0.152 4.152 12 C -0.034 4.034 13 N -0.332 5.332 14 C 0.351 3.649 15 O -0.469 6.469 16 C -0.177 4.177 17 C -0.085 4.085 18 C -0.151 4.151 19 C -0.093 4.093 20 Br 0.097 6.903 21 N -0.192 5.192 22 C -0.003 4.003 23 C -0.016 4.016 24 H 0.079 0.921 25 H 0.225 0.775 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.219 0.781 31 H 0.209 0.791 32 H 0.187 0.813 33 H 0.067 0.933 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.315 -22.544 2.577 22.809 hybrid contribution 0.082 2.783 -0.021 2.784 sum 2.397 -19.762 2.555 20.070 Atomic orbital electron populations 1.69746 1.07189 1.28514 1.50215 1.25810 0.95696 1.02826 0.93133 0.85541 0.78293 0.78451 0.78949 1.19421 1.21449 1.19492 1.21810 0.94114 0.91158 1.52280 0.90977 1.19868 0.86727 0.93459 0.80840 1.86071 1.51462 1.54692 1.47390 1.22711 0.97314 0.93148 1.01992 1.22844 0.88145 0.96228 0.96205 1.48682 1.26515 1.08893 1.49135 1.18144 0.80251 0.87493 0.79054 1.90743 1.43603 1.67656 1.44865 1.20944 0.99348 0.93005 1.04433 1.23550 0.98959 0.93621 0.92403 1.22410 0.97933 0.95477 0.99256 1.23547 0.93717 0.94102 0.97955 1.96817 1.98106 0.97855 1.97547 1.67575 1.28537 1.05984 1.17140 1.22943 0.95698 0.89033 0.92584 1.22948 1.00447 0.77997 1.00224 0.92134 0.77542 0.88933 0.88736 0.88841 0.87016 0.78140 0.79132 0.81273 0.93267 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.64 10.69 21.45 0.23 -48.41 16 2 C 0.03 1.32 5.29 84.66 0.45 1.77 16 3 Si 0.96 40.41 29.54 68.60 2.03 42.44 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.56 -27.30 8.25 25.60 0.21 -27.09 16 8 H 0.07 3.39 7.78 -2.91 -0.02 3.36 16 9 C 0.23 10.39 0.88 -10.15 -0.01 10.38 16 10 O -0.59 -28.52 13.17 -148.98 -1.96 -30.48 16 11 C -0.11 -3.71 6.13 31.78 0.19 -3.52 16 12 C 0.09 2.33 4.87 86.73 0.42 2.75 16 13 N -0.60 -22.44 3.33 -817.48 -2.72 -25.16 16 14 C 0.56 21.32 7.81 86.77 0.68 22.00 16 15 O -0.59 -27.19 16.69 -3.88 -0.06 -27.25 16 16 C -0.17 -4.96 5.89 -19.99 -0.12 -5.07 16 17 C -0.06 -1.22 8.68 22.73 0.20 -1.02 16 18 C -0.13 -2.19 9.81 22.34 0.22 -1.97 16 19 C 0.12 2.67 7.17 84.73 0.61 3.28 16 20 Br 0.01 0.22 33.86 -20.37 -0.69 -0.47 16 21 N -0.48 -12.94 10.30 -189.64 -1.95 -14.90 16 22 C 0.16 4.53 10.76 85.02 0.92 5.44 16 23 C 0.11 4.91 5.50 86.85 0.48 5.39 16 24 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 25 H 0.38 19.52 7.24 -74.06 -0.54 18.98 16 26 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.09 2.81 8.02 -2.39 -0.02 2.79 16 28 H 0.09 2.16 6.67 -2.38 -0.02 2.14 16 29 H 0.11 2.06 6.81 -2.39 -0.02 2.05 16 30 H 0.20 3.18 2.93 -3.82 -0.01 3.17 16 31 H 0.19 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.17 4.95 7.68 -2.91 -0.02 4.93 16 33 H 0.05 2.36 8.03 -2.39 -0.02 2.35 16 34 H 0.04 2.43 7.53 -2.38 -0.02 2.41 16 Total: -1.00 -64.09 307.14 -0.26 -64.36 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.63 Total: 27.54 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 4.24 Total: 12.34 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -4.44 Total: -88.47 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -2.03 Total: -57.73 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 35 Polarization: 0.22 SS G_CDS: -0.69 Total: -0.47 kcal Total: -64.09 -0.26 -64.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.342 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds