Wall clock time and date at job start Sat Apr 11 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47158 * 270.00264 * 3 2 1 5 5 H 1.48503 * 109.47113 * 29.99810 * 3 2 1 6 6 H 1.48494 * 109.47273 * 150.00228 * 3 2 1 7 7 C 1.37880 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99908 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88534 * 303.88223 * 9 7 2 11 11 C 1.55150 * 111.00396 * 180.02562 * 9 7 2 12 12 C 1.54319 * 102.94267 * 206.38501 * 11 9 7 13 13 N 1.47029 * 107.27255 * 22.19304 * 12 11 9 14 14 C 1.34770 * 125.64985 * 180.79109 * 13 12 11 15 15 O 1.21563 * 120.00192 * 174.56636 * 14 13 12 16 16 C 1.47801 * 120.00149 * 354.57288 * 14 13 12 17 17 C 1.40071 * 120.54537 * 6.85489 * 16 14 13 18 18 C 1.38278 * 118.30042 * 179.78297 * 17 16 14 19 19 C 1.38508 * 119.29507 * 0.51802 * 18 17 16 20 20 Br 1.89102 * 119.47511 * 179.69960 * 19 18 17 21 21 N 1.32024 * 121.05275 * 359.72120 * 19 18 17 22 22 C 1.31679 * 121.86522 * 0.02562 * 21 19 18 23 23 C 1.47425 * 108.69965 * 1.06115 * 13 12 11 24 24 H 0.97001 * 120.00082 * 0.02562 * 1 2 3 25 25 H 0.96699 * 113.99891 * 56.12284 * 10 9 7 26 26 H 1.09005 * 110.72070 * 88.02166 * 11 9 7 27 27 H 1.09006 * 110.71806 * 324.74935 * 11 9 7 28 28 H 1.08997 * 109.88713 * 262.77429 * 12 11 9 29 29 H 1.09009 * 110.01229 * 141.67932 * 12 11 9 30 30 H 1.08003 * 120.85435 * 0.02562 * 17 16 14 31 31 H 1.07995 * 120.35449 * 180.21514 * 18 17 16 32 32 H 1.08000 * 119.71164 * 180.02562 * 22 21 19 33 33 H 1.08997 * 110.36959 * 94.70716 * 23 13 12 34 34 H 1.09004 * 110.36528 * 217.03306 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.3522 -2.5685 1.1082 11 6 2.2274 -3.7050 -0.0005 12 6 1.3978 -4.8214 -0.6689 13 7 0.3463 -4.1684 -1.4625 14 6 -0.5977 -4.8007 -2.1873 15 8 -1.4796 -4.1613 -2.7267 16 6 -0.5607 -6.2717 -2.3264 17 6 0.3615 -7.0328 -1.5967 18 6 0.3524 -8.4060 -1.7590 19 6 -0.5523 -8.9786 -2.6377 20 35 -0.5634 -10.8553 -2.8700 21 7 -1.4067 -8.2350 -3.3160 22 6 -1.4394 -6.9246 -3.1914 23 6 0.4996 -2.7074 -1.3391 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2773 -1.8357 1.1505 26 1 2.4974 -3.9826 1.0184 27 1 3.1172 -3.4807 -0.5890 28 1 0.9464 -5.4554 0.0942 29 1 2.0347 -5.4209 -1.3194 30 1 1.0591 -6.5596 -0.9215 31 1 1.0466 -9.0250 -1.2102 32 1 -2.1533 -6.3501 -3.7630 33 1 1.0878 -2.3162 -2.1692 34 1 -0.4773 -2.2250 -1.3047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016368.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:58 Heat of formation + Delta-G solvation = -20.704367 kcal Electronic energy + Delta-G solvation = -21360.667623 eV Core-core repulsion = 17919.756656 eV Total energy + Delta-G solvation = -3440.910967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80733 -39.13380 -37.30768 -34.73572 -32.99870 -32.56589 -32.24309 -30.50828 -29.87860 -28.17065 -25.64225 -24.41606 -23.65141 -22.34178 -20.02927 -19.63879 -17.45610 -17.12505 -16.82172 -16.57714 -15.42792 -15.28882 -15.03298 -14.58364 -14.40779 -14.25767 -13.61659 -13.34585 -13.17269 -12.86063 -12.57122 -12.05329 -11.65924 -11.52077 -11.19910 -11.11811 -10.87615 -10.77464 -10.75087 -10.58181 -10.31386 -10.16591 -10.11932 -9.50628 -9.47939 -9.19002 -8.77690 -8.52875 -7.98723 -6.38333 -4.48484 0.30976 0.91601 1.04439 2.86349 3.14397 3.22981 3.24743 3.33866 3.67717 4.17166 4.18503 4.50801 4.60274 4.66553 4.80531 4.89865 5.13745 5.34340 5.36165 5.52305 5.61770 5.75392 5.81033 5.98233 6.19949 6.32192 6.56063 6.67850 6.75666 7.11322 7.20716 7.39524 7.64827 7.87124 7.95122 8.43716 8.55474 9.21626 9.35170 10.68933 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.038746 B = 0.002551 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.477027 B =10974.875740 C =11391.494224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.120 4.120 12 C 0.090 3.910 13 N -0.597 5.597 14 C 0.565 3.435 15 O -0.538 6.538 16 C -0.156 4.156 17 C -0.074 4.074 18 C -0.145 4.145 19 C 0.133 3.867 20 Br -0.010 7.010 21 N -0.466 5.466 22 C 0.164 3.836 23 C 0.091 3.909 24 H 0.272 0.728 25 H 0.388 0.612 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.183 0.817 31 H 0.150 0.850 32 H 0.178 0.822 33 H 0.065 0.935 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 -18.767 -3.288 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.158 4.158 12 C -0.033 4.033 13 N -0.329 5.329 14 C 0.352 3.648 15 O -0.417 6.417 16 C -0.162 4.162 17 C -0.100 4.100 18 C -0.167 4.167 19 C -0.084 4.084 20 Br 0.074 6.926 21 N -0.176 5.176 22 C 0.004 3.996 23 C -0.030 4.030 24 H 0.083 0.917 25 H 0.240 0.760 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.200 0.800 31 H 0.168 0.832 32 H 0.195 0.805 33 H 0.083 0.917 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.259 -19.987 -4.146 20.451 hybrid contribution 0.625 2.127 0.379 2.249 sum 1.884 -17.860 -3.767 18.350 Atomic orbital electron populations 1.69555 1.06052 1.28181 1.49512 1.25092 0.95052 0.99896 0.93180 0.86367 0.79773 0.82236 0.78342 1.20363 1.20930 1.19641 1.21475 0.93737 0.89965 1.52629 0.91353 1.19582 0.85714 0.91758 0.82021 1.86059 1.51096 1.53100 1.49222 1.22708 0.97972 0.94648 1.00481 1.22513 0.89883 0.96859 0.94034 1.48636 1.28552 1.10060 1.45608 1.17561 0.81756 0.85733 0.79740 1.90783 1.35083 1.67147 1.48732 1.21298 0.98978 0.95624 1.00291 1.23414 0.96648 0.93367 0.96541 1.22010 0.99754 0.95753 0.99198 1.23046 0.95648 0.93093 0.96593 1.96787 1.98237 1.00420 1.97110 1.67552 1.21007 1.06732 1.22273 1.23044 0.94891 0.88493 0.93203 1.23428 1.03000 0.75710 1.00850 0.91739 0.75995 0.90274 0.90093 0.91057 0.91616 0.80038 0.83188 0.80470 0.91662 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.90 10.72 55.43 0.59 -22.30 16 2 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 3 Si 0.91 19.53 29.54 -169.99 -5.02 14.51 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.54 -13.23 8.25 -34.44 -0.28 -13.52 16 8 H 0.07 1.63 7.76 -52.49 -0.41 1.22 16 9 C 0.25 5.63 0.89 -89.62 -0.08 5.55 16 10 O -0.58 -14.17 13.18 -35.23 -0.46 -14.64 16 11 C -0.12 -2.12 6.13 -24.90 -0.15 -2.27 16 12 C 0.09 1.36 4.87 -3.06 -0.01 1.34 16 13 N -0.60 -11.28 3.33 -172.56 -0.57 -11.86 16 14 C 0.56 10.63 7.81 -12.35 -0.10 10.53 16 15 O -0.54 -11.90 16.63 5.31 0.09 -11.82 16 16 C -0.16 -2.34 5.89 -104.82 -0.62 -2.95 16 17 C -0.07 -0.89 8.69 -38.88 -0.34 -1.23 16 18 C -0.14 -1.54 9.81 -39.47 -0.39 -1.93 16 19 C 0.13 1.62 7.17 -17.37 -0.12 1.50 16 20 Br -0.01 -0.10 33.86 -68.01 -2.30 -2.40 16 21 N -0.47 -6.52 10.31 -11.29 -0.12 -6.64 16 22 C 0.16 2.35 10.76 -17.14 -0.18 2.17 16 23 C 0.09 2.04 5.65 -2.53 -0.01 2.02 16 24 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.39 9.86 6.93 45.56 0.32 10.18 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.08 1.33 8.01 -51.93 -0.42 0.91 16 28 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 29 H 0.07 0.79 6.72 -51.92 -0.35 0.44 16 30 H 0.18 1.93 2.91 -53.68 -0.16 1.77 16 31 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.18 2.43 7.68 -52.49 -0.40 2.03 16 33 H 0.07 1.48 8.03 -51.93 -0.42 1.07 16 34 H 0.09 2.22 7.60 -51.93 -0.39 1.82 16 LS Contribution 307.00 15.07 4.63 4.63 Total: -1.00 -28.19 307.00 -8.12 -36.30 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -2.56 Total: 11.31 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.39 Total: 2.90 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.10 Total: -40.80 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.38 Total: -26.45 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.30 Total: -2.40 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.19 -8.12 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016368.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.598 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds